Specific Phenotypes for Parabacteroides merdae CL09T00C40 in mouse mixed community experiments

Condition Gene Description Fitness Cons.
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS00470 lipoyl(octanoyl) transferase LipB -2.0  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS00835 excinuclease ABC subunit UvrA -2.4  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS01205 Gfo/Idh/MocA family oxidoreductase -2.1  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS01360 efflux RND transporter permease subunit -1.2  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS01365 efflux RND transporter periplasmic adaptor subunit -1.7  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS02535 kelch repeat-containing protein -1.8  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS02540 hypothetical protein -2.1  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS02555 FHA domain-containing protein -2.0  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS03420 pyruvate, phosphate dikinase -1.2  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS03475 thiamine phosphate synthase -3.0  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS03930 PIG-L family deacetylase -1.7  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS05225 excinuclease ABC subunit UvrA -2.1  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS05530 WbqC family protein -2.0  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS05625 metal ABC transporter permease -1.4  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS06550 RNA methyltransferase -2.3  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS06890 zinc ABC transporter substrate-binding protein -1.7  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS07265 DUF4493 domain-containing protein -1.1  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS07270 DUF4493 domain-containing protein -1.5  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS07275 DUF4493 domain-containing protein -1.6  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS07280 PCMD domain-containing protein -1.5  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS07285 hypothetical protein -1.4  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS07290 PCMD domain-containing protein -1.3  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS08545 PaaI family thioesterase -1.3  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS10165 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -1.6  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS10430 amidophosphoribosyltransferase -6.2  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS10730 4-alpha-glucanotransferase -1.8  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS10910 alpha-amylase family protein -4.5  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS10925 glutamine synthetase III -2.3  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS11595 urocanate hydratase -1.5  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS12195 sodium/solute symporter -1.5  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS12455 transcriptional regulator -6.4  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS12460 FAD-dependent oxidoreductase -3.8  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS12825 dicarboxylate/amino acid:cation symporter -6.4  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS14075 glycosyltransferase -4.2  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS14395 beta-galactosidase GalB -2.3  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS15005 biosynthetic arginine decarboxylase -4.9  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS15115 aminomethyl-transferring glycine dehydrogenase -1.7  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS15345 DUF6057 family protein -1.3  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS15385 site-specific integrase -2.1  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS15515 glycoside hydrolase family 2 TIM barrel-domain containing protein -4.6  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS15525 RagB/SusD family nutrient uptake outer membrane protein -3.3  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS15530 TonB-dependent receptor -3.1  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA -2.0  
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm HMPREF1078_RS16415 Do family serine endopeptidase -1.5