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Specific Phenotypes for
Parabacteroides merdae CL09T00C40
in mouse mixed community experiments
Condition
Gene
Description
Fitness
Cons.
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS00470
lipoyl(octanoyl) transferase LipB
-2.0
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS00835
excinuclease ABC subunit UvrA
-2.4
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS01205
Gfo/Idh/MocA family oxidoreductase
-2.1
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS01360
efflux RND transporter permease subunit
-1.2
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS01365
efflux RND transporter periplasmic adaptor subunit
-1.7
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS02535
kelch repeat-containing protein
-1.8
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS02540
hypothetical protein
-2.1
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS02555
FHA domain-containing protein
-2.0
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS03420
pyruvate, phosphate dikinase
-1.2
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS03475
thiamine phosphate synthase
-3.0
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS03930
PIG-L family deacetylase
-1.7
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS05225
excinuclease ABC subunit UvrA
-2.1
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS05530
WbqC family protein
-2.0
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS05625
metal ABC transporter permease
-1.4
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS06550
RNA methyltransferase
-2.3
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS06890
zinc ABC transporter substrate-binding protein
-1.7
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS07265
DUF4493 domain-containing protein
-1.1
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS07270
DUF4493 domain-containing protein
-1.5
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS07275
DUF4493 domain-containing protein
-1.6
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS07280
PCMD domain-containing protein
-1.5
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS07285
hypothetical protein
-1.4
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS07290
PCMD domain-containing protein
-1.3
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS08545
PaaI family thioesterase
-1.3
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS10165
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
-1.6
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS10430
amidophosphoribosyltransferase
-6.2
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS10730
4-alpha-glucanotransferase
-1.8
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS10910
alpha-amylase family protein
-4.5
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS10925
glutamine synthetase III
-2.3
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS11595
urocanate hydratase
-1.5
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS12195
sodium/solute symporter
-1.5
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS12455
transcriptional regulator
-6.4
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS12460
FAD-dependent oxidoreductase
-3.8
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS12825
dicarboxylate/amino acid:cation symporter
-6.4
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS14075
glycosyltransferase
-4.2
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS14395
beta-galactosidase GalB
-2.3
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS15005
biosynthetic arginine decarboxylase
-4.9
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS15115
aminomethyl-transferring glycine dehydrogenase
-1.7
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS15345
DUF6057 family protein
-1.3
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS15385
site-specific integrase
-2.1
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS15515
glycoside hydrolase family 2 TIM barrel-domain containing protein
-4.6
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS15525
RagB/SusD family nutrient uptake outer membrane protein
-3.3
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS15530
TonB-dependent receptor
-3.1
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS16085
tRNA pseudouridine(38-40) synthase TruA
-2.0
diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm
HMPREF1078
_RS16415
Do family serine endopeptidase
-1.5