Specific Phenotypes for Bifidobacterium breve UCC2003 in mouse coculture experiments

Condition Gene Description Fitness Cons.
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS16850 peptidase M24 family protein -2.1  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS16855 NUDIX domain-containing protein -3.1  
diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS19060 amino acid permease -1.8  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS10645 Hsp20/alpha crystallin family protein -2.3  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS10830 ketol-acid reductoisomerase -1.4  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS11095 DUF4862 domain-containing protein -1.2  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS11100 ROK family protein -1.3  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS11160 FadR family transcriptional regulator +1.5  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS11170 2-isopropylmalate synthase -1.3  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS12220 isopeptide-forming domain-containing fimbrial protein variable  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS12350 acetolactate synthase large subunit -1.4  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS14945 peptidase E -2.0  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS15255 glutamate synthase large subunit -1.7  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS15260 glutamate synthase subunit beta -2.0  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS15470 LysR family transcriptional regulator -2.0  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS16850 peptidase M24 family protein -2.0  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS17435 universal stress protein variable  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS17635 dihydroxy-acid dehydratase -2.4  
diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 BBR_RS19505 LacI family transcriptional regulator variable