Specific Phenotypes for Bifidobacterium breve UCC2003 in mouse experiments

Condition Gene Description Fitness Cons.
diet=HighFatHighSugar; sample=FecalPellet BBR_RS10365 LacI family DNA-binding transcriptional regulator -1.3  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS10385 LacI family transcriptional regulator -1.2  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS10400 carbohydrate ABC transporter permease +2.2  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS10405 sugar ABC transporter permease +1.6  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS10430 LacI family transcriptional regulator +1.8  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS10560 hypothetical protein -1.7  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS10790 LacI family transcriptional regulator variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS10825 beta-glucosidase -1.4  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS11160 FadR family transcriptional regulator variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS11440 FMN-binding protein variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS12140 LacI family transcriptional regulator -2.0  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS12385 oxidoreductase -3.3  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS12515 LacI family transcriptional regulator variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS13810 hypothetical protein -1.5  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS14630 glutamine-binding protein glnH variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS15485 ABC transporter ATP-binding protein variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS15490 short-chain dehydrogenase variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS15560 aminotransferase class V-fold PLP-dependent enzyme -5.1  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS15715 Cof-type HAD-IIB family hydrolase variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS15965 transporter, drug/metabolite exporter family variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS16680 chorismate mutase -5.0  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS16725 L-aspartate oxidase variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS16850 peptidase M24 family protein -1.7  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS17270 ROK family protein -1.2  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS17435 universal stress protein variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS17610 DedA family protein variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS17770 sugar ABC transporter ATP-binding protein variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS18330 PIN domain-containing protein variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS19145 NCS2 family permease +1.8  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS19930 FAD:protein FMN transferase -1.5  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS19980 LacI family transcriptional regulator variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS20255 PTS N-acetylglucosamine transporter subunit IIABC variable  
diet=HighFatHighSugar; sample=FecalPellet BBR_RS20470 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG variable  
diet=PolysaccharideDeficient; sample=FecalPellet BBR_RS11165 serine/threonine protein phosphatase +1.2  
diet=PolysaccharideDeficient; sample=FecalPellet BBR_RS15415 choloylglycine hydrolase +2.3  
diet=PolysaccharideDeficient; sample=FecalPellet BBR_RS19620 hypothetical protein -1.1  
diet=StandardDiet2; sample=FecalPellet BBR_RS10300 DUF4981 domain-containing protein -1.3  
diet=StandardDiet2; sample=FecalPellet BBR_RS11440 FMN-binding protein variable  
diet=StandardDiet2; sample=FecalPellet BBR_RS12115 hypothetical protein variable  
diet=StandardDiet2; sample=FecalPellet BBR_RS12120 aspartate ammonia-lyase -2.6  
diet=StandardDiet2; sample=FecalPellet BBR_RS12515 LacI family transcriptional regulator -2.4  
diet=StandardDiet2; sample=FecalPellet BBR_RS13810 hypothetical protein -1.5  
diet=StandardDiet2; sample=FecalPellet BBR_RS14630 glutamine-binding protein glnH +2.2  
diet=StandardDiet2; sample=FecalPellet BBR_RS14810 ROK family protein variable  
diet=StandardDiet2; sample=FecalPellet BBR_RS16290 histidine phosphatase family protein -2.3  
diet=StandardDiet2; sample=FecalPellet BBR_RS18010 zinc metalloprotease -1.2  
diet=StandardDiet2; sample=FecalPellet BBR_RS19060 amino acid permease -1.0  
diet=StandardDiet2; sample=FecalPellet BBR_RS19610 diguanylate cyclase variable  
diet=StandardDiet2; sample=FecalPellet BBR_RS19690 glycerophosphodiester phosphodiesterase -1.4  
diet=StandardDiet2; sample=FecalPellet BBR_RS19930 FAD:protein FMN transferase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS10300 DUF4981 domain-containing protein -2.3  
diet=StandardDiet; sample=FecalPellet BBR_RS10365 LacI family DNA-binding transcriptional regulator variable  
diet=StandardDiet; sample=FecalPellet BBR_RS10385 LacI family transcriptional regulator -1.8  
diet=StandardDiet; sample=FecalPellet BBR_RS10400 carbohydrate ABC transporter permease +1.8  
diet=StandardDiet; sample=FecalPellet BBR_RS10405 sugar ABC transporter permease +1.5  
diet=StandardDiet; sample=FecalPellet BBR_RS10725 Lead, cadmium, zinc and mercury transporting ATPase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS10790 LacI family transcriptional regulator -2.0  
diet=StandardDiet; sample=FecalPellet BBR_RS11735 LacI family transcriptional regulator -1.6  
diet=StandardDiet; sample=FecalPellet BBR_RS12140 LacI family transcriptional regulator variable  
diet=StandardDiet; sample=FecalPellet BBR_RS12385 oxidoreductase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS12515 LacI family transcriptional regulator variable  
diet=StandardDiet; sample=FecalPellet BBR_RS12540 MFS transporter +1.4  
diet=StandardDiet; sample=FecalPellet BBR_RS13110 type III pantothenate kinase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS13810 hypothetical protein -1.3  
diet=StandardDiet; sample=FecalPellet BBR_RS14005 haloacid dehalogenase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS14630 glutamine-binding protein glnH variable  
diet=StandardDiet; sample=FecalPellet BBR_RS15525 RNase adapter RapZ variable  
diet=StandardDiet; sample=FecalPellet BBR_RS15640 HIT domain-containing protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS16140 long-chain fatty acid--CoA ligase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS16290 histidine phosphatase family protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS16560 hypothetical protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS16850 peptidase M24 family protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS17435 universal stress protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS17610 DedA family protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS17705 type I-C CRISPR-associated protein Cas7/Csd2 variable  
diet=StandardDiet; sample=FecalPellet BBR_RS18010 zinc metalloprotease variable  
diet=StandardDiet; sample=FecalPellet BBR_RS18480 LacI family DNA-binding transcriptional regulator variable  
diet=StandardDiet; sample=FecalPellet BBR_RS18495 ROK family protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS18615 DUF4037 domain-containing protein -1.4  
diet=StandardDiet; sample=FecalPellet BBR_RS19610 diguanylate cyclase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19690 glycerophosphodiester phosphodiesterase -1.1  
diet=StandardDiet; sample=FecalPellet BBR_RS19840 TatD family deoxyribonuclease variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19845 ABC transporter ATP-binding protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19850 ABC transporter ATP-binding protein -1.0