Specific Phenotypes for Pseudomonas fluorescens FW300-N2E2 in motility experiments

Condition Gene Description Fitness Cons.
Agar Pf6N2E2_1678 Major facilitator family transporter +1.4  
Agar Pf6N2E2_2030 ABC transporter, periplasmic substrate-binding protein -1.3  
Agar Pf6N2E2_2032 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) -1.2  
Agar Pf6N2E2_2192 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) -1.8  
Agar Pf6N2E2_2193 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) -2.4  
Agar Pf6N2E2_2194 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) -1.9  
Agar Pf6N2E2_2302 CAAX amino terminal protease family protein +2.2  
Agar Pf6N2E2_2303 Aerotaxis receptor Aer -3.8 Yes
Agar Pf6N2E2_2305 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) -1.6  
Agar Pf6N2E2_2329 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) +2.5 Yes
Agar Pf6N2E2_2399 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase -2.4  
Agar Pf6N2E2_2563 FIG00953562: hypothetical protein -5.1  
Agar Pf6N2E2_2564 Positive regulator of CheA protein activity (CheW) -4.4 Yes
Agar Pf6N2E2_2565 CheW domain protein -4.4 Yes
Agar Pf6N2E2_2566 Chromosome (plasmid) partitioning protein ParA -4.2 Yes
Agar Pf6N2E2_2567 Flagellar motor rotation protein MotB -4.2 Yes
Agar Pf6N2E2_2568 Flagellar motor rotation protein MotA -4.4 Yes
Agar Pf6N2E2_2569 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) -4.5 Yes
Agar Pf6N2E2_2570 Signal transduction histidine kinase CheA (EC 2.7.3.-) -6.2 Yes
Agar Pf6N2E2_2573 RNA polymerase sigma factor for flagellar operon -6.2 Yes
Agar Pf6N2E2_2575 Flagellar biosynthesis protein FlhF -5.6  
Agar Pf6N2E2_2585 Flagellar hook-length control protein FliK -6.4 Yes
Agar Pf6N2E2_2587 Serine phosphatase RsbU, regulator of sigma subunit +1.5 Yes
Agar Pf6N2E2_2595 Flagellar regulatory protein FleQ -1.7 Yes
Agar Pf6N2E2_2596 Flagellar sensor histidine kinase FleS -1.9 Yes
Agar Pf6N2E2_2599 Flagellar biosynthesis protein FliS -4.1 Yes
Agar Pf6N2E2_2600 Flagellar hook-associated protein FliD -4.6 Yes
Agar Pf6N2E2_2601 Flagellin protein FlaG +2.7 Yes
Agar Pf6N2E2_2602 Flagellin protein FlaA -6.1  
Agar Pf6N2E2_2612 O-antigen biosynthesis protein +1.1  
Agar Pf6N2E2_2621 glycosyl transferase, group 2 family protein +1.2  
Agar Pf6N2E2_2622 Flagellar hook-associated protein FlgL -5.8 Yes
Agar Pf6N2E2_2623 Flagellar hook-associated protein FlgK -5.6 Yes
Agar Pf6N2E2_2710 FIG00953701: hypothetical protein -5.1  
Agar Pf6N2E2_2763 Predicted signal transduction protein -2.2 Yes
Agar Pf6N2E2_3345 Thymidine phosphorylase (EC 2.4.2.4) -1.1  
Agar Pf6N2E2_3433 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) -1.9  
Agar Pf6N2E2_3486 FIG00953575: hypothetical protein -2.4 Yes
Agar Pf6N2E2_3508 Probable two-component response regulator +4.6 Yes
Agar Pf6N2E2_3827 FIG00955429: hypothetical protein +5.5 Yes
Agar Pf6N2E2_3871 FIG00553872: hypothetical protein +2.5  
Agar Pf6N2E2_3891 Putative formate dehydrogenase oxidoreductase protein -1.5  
Agar Pf6N2E2_3906 Transcription accessory protein (S1 RNA-binding domain) -2.3 Yes
Agar Pf6N2E2_4167 Zinc ABC transporter, ATP-binding protein ZnuC -1.9 Yes
Agar Pf6N2E2_4233 sulfatase domain protein, putative -1.1  
Agar Pf6N2E2_4616 type IV pilus biogenesis protein PilJ +2.8 Yes
Agar Pf6N2E2_4617 Signal transduction histidine kinase CheA (EC 2.7.3.-) +2.2 Yes
Agar Pf6N2E2_4809 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases -2.3  
Agar Pf6N2E2_4926 hypothetical protein +1.7  
Agar Pf6N2E2_5129 ClpB protein -4.0 Yes
Agar Pf6N2E2_5184 Chromosome segregation ATPases -2.7 Yes
Agar Pf6N2E2_5185 FIG00961017: hypothetical protein -1.7  
Agar Pf6N2E2_5186 FIG00954491: hypothetical protein -3.0 Yes
Agar Pf6N2E2_5278 Signal transduction histidine kinase +1.6  
Agar Pf6N2E2_5390 Uricase (urate oxidase) (EC 1.7.3.3) -2.7  
Agar Pf6N2E2_5491 FOG: GGDEF domain +1.3 Yes
Agar Pf6N2E2_5589 Sodium-type flagellar protein motY precursor -5.2 Yes
Agar Pf6N2E2_5684 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY -1.3  
Agar Pf6N2E2_5685 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) -1.8  
Agar Pf6N2E2_5689 Flagellar biosynthesis protein FlgN -5.0  
Agar Pf6N2E2_5692 Chemotaxis protein CheV (EC 2.7.3.-) +3.3 Yes
Agar Pf6N2E2_5693 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) -4.3 Yes
Agar Pf6N2E2_582 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) -2.2  
Agar Pf6N2E2_583 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) -1.8  
Agar Pf6N2E2_584 ABC transporter, periplasmic substrate-binding protein -2.0 Yes
Agar Pf6N2E2_5872 Sensor histidine kinase/response regulator +3.2  
Agar Pf6N2E2_5873 FIG00953467: hypothetical protein +3.1  
Agar Pf6N2E2_5893 FIG00956448: hypothetical protein -3.8 Yes
Agar Pf6N2E2_5963 lipoprotein, putative -4.6 Yes
Agar Pf6N2E2_69 Probable type IV pilus assembly FimV-related transmembrane protein -4.0 Yes
Agar Pf6N2E2_731 Respiratory nitrate reductase delta chain (EC 1.7.99.4) -1.9  
Agar Pf6N2E2_815 Signal transduction histidine kinase +2.8  
Agar Pf6N2E2_816 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) +2.0  
Agar Pf6N2E2_818 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY +2.6