Specific Phenotypes for Paraburkholderia bryophila 376MFSha3.1 in in planta experiments

Condition Gene Description Fitness Cons.
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_02373 methylmalonate-semialdehyde dehydrogenase [acylating] -1.4  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_02471 2,4-dienoyl-CoA reductase -1.6  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_02472 Fe-S oxidoreductase -2.2  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_02473 electron transfer flavoprotein alpha subunit apoprotein -1.9 Yes
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_03138 Outer membrane protein (porin) +1.7  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_03812 hypothetical protein -1.2  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04059 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family -1.4  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04061 amino acid/amide ABC transporter membrane protein 2, HAAT family -1.2  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04685 cob(I)alamin adenosyltransferase -1.3  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04973 Excinuclease ABC subunit B -1.1  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_06271 ABC-type uncharacterized transport system, permease component -2.8  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days H281DRAFT_01592 transcriptional regulator, TetR family variable  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days H281DRAFT_02150 phosphoheptose isomerase -1.2  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days H281DRAFT_02367 Signal transduction histidine kinase +1.4  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days H281DRAFT_02368 two component transcriptional regulator, winged helix family +1.5  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days H281DRAFT_02430 transketolase subunit A +1.5  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_00158 superoxide dismutase, Cu-Zn family -1.2  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_01265 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase -1.3  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_01837 hypothetical protein variable  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_02367 Signal transduction histidine kinase variable Yes
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_02427 Choline dehydrogenase +1.5  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_02430 transketolase subunit A +1.8  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_02504 Alkylhydroperoxidase family enzyme, contains CxxC motif +1.4  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_02694 DNA binding domain-containing protein, excisionase family variable  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_04010 oxygen-independent coproporphyrinogen-3 oxidase -1.3  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_04178 serine protease Do -1.5  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_04385 putative membrane protein -1.6  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_05070 camphor resistance protein CrcB +1.5  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_05295 transcriptional regulator, GntR family -2.7  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days H281DRAFT_05512 branched-chain amino acid transport system ATP-binding protein variable  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_03187 transcriptional regulator, LysR family variable  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_03427 cytochrome bo3 quinol oxidase subunit 1 apoprotein -1.4  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04000 transcription elongation factor GreB -1.2  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04040 oxygen-independent coproporphyrinogen-3 oxidase -1.2  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04458 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase -1.6  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04459 5-dehydro-2-deoxygluconokinase -1.9  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04462 monosaccharide ABC transporter substrate-binding protein, CUT2 family -1.9  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_03427 cytochrome bo3 quinol oxidase subunit 1 apoprotein -1.3  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04000 transcription elongation factor GreB -1.3  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04458 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase -1.9  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04459 5-dehydro-2-deoxygluconokinase -1.5  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_05742 CheA signal transduction histidine kinase -2.0  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_05745 MCP methyltransferase, CheR-type -1.4  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_05772 flagellar hook-associated protein 1 FlgK -1.8 Yes
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_05773 flagellar hook-associated protein 3 FlgL -2.1  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_00737 Methylase involved in ubiquinone/menaquinone biosynthesis +1.6  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_02373 methylmalonate-semialdehyde dehydrogenase [acylating] -1.7  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_03187 transcriptional regulator, LysR family -1.8  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04224 Fatty acid desaturase variable  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04456 5-deoxyglucuronate isomerase -2.9  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04457 2-keto-myo-inositol dehydratase -2.5  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04458 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase variable  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04459 5-dehydro-2-deoxygluconokinase variable  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04462 monosaccharide ABC transporter substrate-binding protein, CUT2 family -2.8  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_04464 myo-inositol 2-dehydrogenase -2.1  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_05206 chloride channel protein, CIC family -1.2  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days H281DRAFT_05739 chemotaxis protein MotA +1.1