Specific Phenotypes for Burkholderia phytofirmans PsJN in in planta experiments

Condition Gene Description Fitness Cons.
Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS01300 ArsR family transcriptional regulator -2.8  
Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS12025 multidrug DMT transporter permease -1.8  
Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS13920 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) -1.5  
Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS27120 hypothetical protein +2.7  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS03555 glutamine-synthetase adenylyltransferase -1.4  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS09375 (2Fe-2S)-binding protein -1.5  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS12955 damage-inducible protein -2.6  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS13595 IclR family transcriptional regulator -1.4  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS13920 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) -1.8  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS13925 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) -1.4  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS14280 membrane protein -2.2  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS19540 sensor histidine kinase -1.1  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS20700 nucleoside hydrolase +2.1  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS22095 porin -1.3  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS00725 hypothetical protein +1.5  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS07265 3-hydroxyanthranilate 3,4-dioxygenase +2.3  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS07920 hypothetical protein +2.6  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS11890 hypothetical protein +2.8  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS12025 multidrug DMT transporter permease -1.2  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS12955 damage-inducible protein -2.3  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS13920 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) -1.3  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS16945 2-dehydro-3-deoxy-6-phosphogalactonate aldolase -2.4  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS20090 nitrate ABC transporter substrate-binding protein +3.2  
Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS22095 porin -1.3  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS01830 LacI family transcriptional regulator -1.2  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS12955 damage-inducible protein -2.3  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS13595 IclR family transcriptional regulator -1.6  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS17290 porin -1.5  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS18605 NAD-dependent dehydratase -1.3  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS19350 amino acid ABC transporter substrate-binding protein +1.3  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS21555 beta alanine--pyruvate aminotransferase +1.3  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS25205 electron transfer flavoprotein subunit alpha -1.2 Yes
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS30165 sarcosine oxidase subunit beta +1.1  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS30210 GCN5 family acetyltransferase +1.9  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days BPHYT_RS02165 adenosylmethionine-8-amino-7-oxononanoate aminotransferase -2.0  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days BPHYT_RS13575 FAD-dependent oxidoreductase -1.0  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days BPHYT_RS14270 electron transporter -1.6  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days BPHYT_RS19350 amino acid ABC transporter substrate-binding protein +3.8  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days BPHYT_RS19355 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase +2.7  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days BPHYT_RS22095 porin -1.3  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days BPHYT_RS02165 adenosylmethionine-8-amino-7-oxononanoate aminotransferase -1.6  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days BPHYT_RS08815 L-asparaginase (EC 3.5.1.1) (from data) -1.7  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days BPHYT_RS14270 electron transporter -1.8  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days BPHYT_RS16575 Xaa-Pro aminopeptidase -1.4  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days BPHYT_RS18620 transcriptional regulator -1.7  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days BPHYT_RS19350 amino acid ABC transporter substrate-binding protein +4.1  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days BPHYT_RS19355 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase +3.1  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days BPHYT_RS19535 XRE family transcriptional regulator -1.6  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days BPHYT_RS19540 sensor histidine kinase -1.2 Yes
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days BPHYT_RS22560 flagellar transcriptional regulator FlhD +1.6  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days BPHYT_RS23260 isovaleryl-CoA dehydrogenase -1.2  
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days BPHYT_RS25525 hypothetical protein variable  
Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days BPHYT_RS19595 general secretion pathway protein GspD +1.5  
Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days BPHYT_RS33635 AMP nucleosidase -1.2  
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days BPHYT_RS07465 FAD-dependent pyridine nucleotide-disulfide oxidoreductase variable  
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days BPHYT_RS08305 membrane protein +1.9  
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days BPHYT_RS13665 alpha/beta hydrolase variable  
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days BPHYT_RS19555 glutamine amidotransferase variable  
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days BPHYT_RS21480 hypothetical protein variable  
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days BPHYT_RS22055 DNA-binding protein variable  
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days BPHYT_RS22225 hypothetical protein +2.3  
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days BPHYT_RS27100 RNase II stability modulator +1.8  
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days BPHYT_RS27445 hypothetical protein variable  
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days BPHYT_RS32540 hypothetical protein variable  
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days BPHYT_RS34990 FAD-dependent pyridine nucleotide-disulfide oxidoreductase variable  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days BPHYT_RS13925 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) -1.6  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days BPHYT_RS15605 ABC transporter permease -1.3  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days BPHYT_RS19105 aminotransferase -1.4  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days BPHYT_RS19110 3-oxoacyl-ACP synthase -1.5  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS00025 hypothetical protein -1.2  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS05725 hypothetical protein +1.6  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS10070 hypothetical protein +1.7  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS16855 16S rRNA methyltransferase +2.0  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS18850 Flagellar brake protein YcgR 1 variable  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS22320 hypothetical protein +1.4  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS24075 ATPase +1.9  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS34270 LysR family transcriptional regulator +1.5  
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS36295 hypothetical protein +1.0  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS02970 excinuclease ABC subunit A +1.2  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS04675 protein-L-isoaspartate O-methyltransferase +2.0  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS07340 glyoxalase +2.2  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS08885 inorganic phosphate transporter -1.4  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS10070 hypothetical protein +2.5  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS10980 2-dehydro-3-deoxy-6-phosphogalactonate aldolase +2.0  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS14785 AsnC family transcriptional regulator -1.3  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS16075 D-arabinitol 4-dehydrogenase -1.6  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS16355 recombination protein RecX -1.4  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS16855 16S rRNA methyltransferase +2.6  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS18845 flagellar hook-associated protein FlgK -1.9 Yes
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS18850 Flagellar brake protein YcgR 1 variable  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS19010 flagellar motor protein MotB -1.6  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS19015 flagellar motor protein MotA -1.7  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS22320 hypothetical protein +1.7  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS24075 ATPase +2.7  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS29040 diguanylate cyclase +2.2  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS36295 hypothetical protein +1.3  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS36305 hypothetical protein +1.2  
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS36310 hypothetical protein +1.3  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS00550 excinuclease ABC subunit B -1.2  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS05725 hypothetical protein +1.5  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS16075 D-arabinitol 4-dehydrogenase -1.6  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS16855 16S rRNA methyltransferase +1.7  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS22560 flagellar transcriptional regulator FlhD +1.5  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS24075 ATPase +2.2  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS29040 diguanylate cyclase +1.7  
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days BPHYT_RS36305 hypothetical protein +1.2  
Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days BPHYT_RS01285 polyketide cyclase -1.2  
Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days BPHYT_RS01300 ArsR family transcriptional regulator -3.2  
Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days BPHYT_RS01885 branched-chain amino acid ABC transporter substrate-binding protein -1.3  
Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days BPHYT_RS06905 excinuclease ABC subunit B -2.6  
Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days BPHYT_RS07755 diguanylate cyclase +1.5  
Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days BPHYT_RS13595 IclR family transcriptional regulator -2.0  
Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days BPHYT_RS14320 UvrABC system protein C -2.0  
Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days BPHYT_RS19535 XRE family transcriptional regulator -1.3  
Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days BPHYT_RS19540 sensor histidine kinase -1.3  
Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days BPHYT_RS27100 RNase II stability modulator +1.8  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS01885 branched-chain amino acid ABC transporter substrate-binding protein -1.5  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS02555 glutamate--cysteine ligase -4.6  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS05120 hypothetical protein -1.5  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS06905 excinuclease ABC subunit B -3.7  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS07300 porin +2.1  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS12475 DNA mismatch repair protein MutS +4.4  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS14495 molybdopterin-guanine dinucleotide biosynthesis protein A -2.4  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS15470 tRNA (guanine-N(7)-)-methyltransferase -1.5  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS15750 elongation factor G -2.2  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS16075 D-arabinitol 4-dehydrogenase -2.4  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS16455 ferritin -1.5  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS16575 Xaa-Pro aminopeptidase -2.9  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS16945 2-dehydro-3-deoxy-6-phosphogalactonate aldolase -2.8  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS17155 peptidase A24 -1.3  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS18850 Flagellar brake protein YcgR 1 +3.3  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS18960 chemotaxis protein CheZ -1.9  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS22755 LacI family transcription regulator +7.0  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS33635 AMP nucleosidase -2.0  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS33770 alpha-amylase -1.6  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS33775 alpha-amylase -1.4  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS34250 ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) +1.5  
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 BPHYT_RS34610 histidine kinase -2.1  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS04310 group 1 glycosyl transferase -1.7  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS05535 diguanylate cyclase +3.2  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS06905 excinuclease ABC subunit B -5.1  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS07815 phosphonate transporter +3.8  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS07820 hypothetical protein +3.1  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS11205 LacI family transcription regulator +3.4  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS11325 voltage-gated chloride channel protein ClcB -4.3  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS14120 chemotaxis protein CheY -7.2  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS14130 phosphate ABC transporter ATP-binding protein -5.9  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS14320 UvrABC system protein C -2.9  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS15605 ABC transporter permease -1.6  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS16075 D-arabinitol 4-dehydrogenase -2.8  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS16355 recombination protein RecX -2.0  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS16700 ABC transporter +4.2  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS17580 SAM-dependent methyltransferase -1.4  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS18845 flagellar hook-associated protein FlgK -1.7  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS18850 Flagellar brake protein YcgR 1 +6.0  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS18930 flagellar biosynthesis protein FlhG -1.7  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS19005 chemotaxis protein CheY -3.1  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS19100 hypothetical protein -1.3  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS19105 aminotransferase -1.4  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS21705 sulfoacetaldehyde acetyltransferase -6.0  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS25205 electron transfer flavoprotein subunit alpha -3.4  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS33770 alpha-amylase -2.3  
Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days BPHYT_RS34930 Rieske (2Fe-2S) protein +1.6  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS01830 LacI family transcriptional regulator -2.8  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS02210 DeoR family transcriptional regulator -1.3  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS02555 glutamate--cysteine ligase -1.4  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS03175 sterol-binding protein -3.9  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS05115 NADH-ubiquinone oxidoreductase subunit 6 -1.1  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS06795 membrane protein +2.5  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS06905 excinuclease ABC subunit B -2.6  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS09375 (2Fe-2S)-binding protein -2.2  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS11325 voltage-gated chloride channel protein ClcB -3.8  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS13595 IclR family transcriptional regulator -4.3  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS14320 UvrABC system protein C -3.5  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS14495 molybdopterin-guanine dinucleotide biosynthesis protein A -2.9  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS14990 formate dehydrogenase subunit beta -1.6  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS14995 formate dehydrogenase subunit alpha -1.3  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS15750 elongation factor G -2.0  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS16075 D-arabinitol 4-dehydrogenase -2.5  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS16355 recombination protein RecX -1.6  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS17155 peptidase A24 -1.2  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS18505 amino acid dehydrogenase -2.7  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS18535 hypothetical protein +1.0  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS18605 NAD-dependent dehydratase -2.5  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS19595 general secretion pathway protein GspD -1.1  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS19605 general secretion pathway protein F -1.7  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS19635 general secretion pathway protein K -1.2  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS19640 general secretion pathway protein L -1.8  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS21740 IclR family transcriptional regulator -1.2  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS23380 hypothetical protein -2.1  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS23935 malonate decarboxylase subunit alpha -2.3  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS27635 alcohol dehydrogenase -1.8  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS32520 GntR family transcriptional regulator +1.5  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS33770 alpha-amylase -1.6  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS34245 ABC transporter for L-rhamnose/L-fucose/xylitol, ATPase component (from data) +3.1  
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 BPHYT_RS34250 ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) +4.9