Specific Phenotypes for Pseudomonas fluorescens FW300-N2E2 in denitrifying experiments

Condition Gene Description Fitness Cons.
Sodium pyruvate Pf6N2E2_1072 LmbE-like protein -1.8  
Sodium pyruvate Pf6N2E2_1295 Sensor histidine kinase -2.4  
Sodium pyruvate Pf6N2E2_1296 DNA-binding response regulator, LuxR family -4.9  
Sodium pyruvate Pf6N2E2_1411 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) -2.6  
Sodium pyruvate Pf6N2E2_1678 Major facilitator family transporter +1.3  
Sodium pyruvate Pf6N2E2_2389 Phosphoenolpyruvate synthase (EC 2.7.9.2) -2.9  
Sodium pyruvate Pf6N2E2_2569 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) variable  
Sodium pyruvate Pf6N2E2_2570 Signal transduction histidine kinase CheA (EC 2.7.3.-) -1.3  
Sodium pyruvate Pf6N2E2_2802 Alcohol dehydrogenase (EC 1.1.1.1) +1.2 Yes
Sodium pyruvate Pf6N2E2_2994 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS -1.3  
Sodium pyruvate Pf6N2E2_3118 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) variable  
Sodium pyruvate Pf6N2E2_3576 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) +1.0  
Sodium pyruvate Pf6N2E2_3577 ABC transporter for L-leucine/L-isoleucine/D-alanine, ATPase component 1 LivG (from data) +1.1  
Sodium pyruvate Pf6N2E2_3578 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) +1.1  
Sodium pyruvate Pf6N2E2_3579 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) +1.0  
Sodium pyruvate Pf6N2E2_3580 Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1) +1.2  
Sodium pyruvate Pf6N2E2_4097 FIG00953365: hypothetical protein -1.7  
Sodium pyruvate Pf6N2E2_4813 Probable two-component sensor, near polyamine transporter -2.8  
Sodium pyruvate Pf6N2E2_5023 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) variable  
Sodium pyruvate Pf6N2E2_5024 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) variable  
Sodium pyruvate Pf6N2E2_5072 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) variable  
Sodium pyruvate Pf6N2E2_5080 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family -3.1  
Sodium pyruvate Pf6N2E2_5239 Putative sulfate permease -5.6 Yes
Sodium pyruvate Pf6N2E2_5295 Serine hydroxymethyltransferase (EC 2.1.2.1) -2.2  
Sodium pyruvate Pf6N2E2_5296 Threonine synthase (EC 4.2.3.1) variable  
Sodium pyruvate Pf6N2E2_5298 Sarcosine oxidase beta subunit (EC 1.5.3.1) -1.4  
Sodium pyruvate Pf6N2E2_5308 Transcriptional regulator, AraC family -3.1  
Sodium pyruvate Pf6N2E2_5309 Permease of the drug/metabolite transporter (DMT) superfamily -4.6  
Sodium pyruvate Pf6N2E2_5471 Transcriptional activator MetR -1.4  
Sodium pyruvate Pf6N2E2_5849 large component of pyruvate transporter (actP-like) (from data) -1.2  
Sodium pyruvate Pf6N2E2_5884 Sensor histidine kinase -1.8  
Sodium pyruvate Pf6N2E2_706 Nitric oxide reductase activation protein NorQ -3.2  
Sodium pyruvate Pf6N2E2_707 Nitric oxide reductase activation protein NorE variable  
Sodium pyruvate Pf6N2E2_709 Nitric-oxide reductase subunit C (EC 1.7.99.7) variable  
Sodium pyruvate Pf6N2E2_710 Nitric-oxide reductase subunit B (EC 1.7.99.7) variable Yes
Sodium pyruvate Pf6N2E2_711 Nitric oxide reductase activation protein NorD -3.9 Yes
Sodium pyruvate Pf6N2E2_717 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR -2.0  
Sodium pyruvate Pf6N2E2_718 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) -5.2  
Sodium pyruvate Pf6N2E2_721 FIG139552: Putative protease -4.2  
Sodium pyruvate Pf6N2E2_722 FIG139928: Putative protease -4.6  
Sodium pyruvate Pf6N2E2_723 FIG138517: Putative lipid carrier protein -4.8  
Sodium pyruvate Pf6N2E2_725 Nitrate/nitrite response regulator protein -5.6  
Sodium pyruvate Pf6N2E2_726 Nitrate/nitrite sensor protein (EC 2.7.3.-) -5.2  
Sodium pyruvate Pf6N2E2_727 Nitrate/nitrite transporter -1.9  
Sodium pyruvate Pf6N2E2_729 Respiratory nitrate reductase alpha chain (EC 1.7.99.4) -4.6 Yes
Sodium pyruvate Pf6N2E2_730 Respiratory nitrate reductase beta chain (EC 1.7.99.4) -4.4  
Sodium pyruvate Pf6N2E2_731 Respiratory nitrate reductase delta chain (EC 1.7.99.4) -4.2  
Sodium pyruvate Pf6N2E2_732 Respiratory nitrate reductase gamma chain (EC 1.7.99.4) -4.9  
Sodium pyruvate Pf6N2E2_735 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) -4.2 Yes
Sodium pyruvate Pf6N2E2_938 hypothetical protein -1.2