Specific Phenotypes for Pseudomonas fluorescens FW300-N1B4 in denitrifying experiments

Condition Gene Description Fitness Cons.
Sodium pyruvate Pf1N1B4_1190 Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing variable  
Sodium pyruvate Pf1N1B4_1818 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) variable  
Sodium pyruvate Pf1N1B4_1820 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) -1.0  
Sodium pyruvate Pf1N1B4_1884 Sensory box histidine kinase +1.6  
Sodium pyruvate Pf1N1B4_1885 alginate biosynthesis transcriptional regulatory protein AlgB +1.2  
Sodium pyruvate Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) +1.4  
Sodium pyruvate Pf1N1B4_2190 Regulator of sigma D +1.8  
Sodium pyruvate Pf1N1B4_2205 Sterol desaturase -1.2  
Sodium pyruvate Pf1N1B4_2357 type IV pilus biogenesis protein PilJ variable  
Sodium pyruvate Pf1N1B4_2406 COG1451: Predicted metal-dependent hydrolase variable  
Sodium pyruvate Pf1N1B4_2541 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) variable  
Sodium pyruvate Pf1N1B4_2748 Transcriptional regulator, TetR family -2.0  
Sodium pyruvate Pf1N1B4_2771 Carbon starvation protein A -1.5  
Sodium pyruvate Pf1N1B4_2837 FIG00956650: hypothetical protein +1.9  
Sodium pyruvate Pf1N1B4_2861 glutamyl-Q-tRNA synthetase variable  
Sodium pyruvate Pf1N1B4_2872 FIG00955330: hypothetical protein variable  
Sodium pyruvate Pf1N1B4_2936 Putative sulfate permease -2.0 Yes
Sodium pyruvate Pf1N1B4_2940 hypothetical protein variable  
Sodium pyruvate Pf1N1B4_2986 sensor histidine kinase variable  
Sodium pyruvate Pf1N1B4_3270 Alcohol dehydrogenase (EC 1.1.1.1) +1.4 Yes
Sodium pyruvate Pf1N1B4_3281 AidA variable  
Sodium pyruvate Pf1N1B4_3514 Sensor histidine kinase/response regulator variable  
Sodium pyruvate Pf1N1B4_3820 2-methylcitrate synthase (EC 2.3.3.5) -1.6  
Sodium pyruvate Pf1N1B4_3868 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) -2.6  
Sodium pyruvate Pf1N1B4_3881 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) variable  
Sodium pyruvate Pf1N1B4_3883 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) variable  
Sodium pyruvate Pf1N1B4_3884 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) variable  
Sodium pyruvate Pf1N1B4_4052 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) -1.3  
Sodium pyruvate Pf1N1B4_4357 Putrescine utilization regulator variable  
Sodium pyruvate Pf1N1B4_4374 hypothetical protein variable  
Sodium pyruvate Pf1N1B4_4654 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) variable  
Sodium pyruvate Pf1N1B4_4673 4Fe-4S ferredoxin, iron-sulfur binding variable  
Sodium pyruvate Pf1N1B4_4776 Nicotinamidase (EC 3.5.1.19) variable  
Sodium pyruvate Pf1N1B4_5136 Carboxynorspermidine dehydrogenase -1.7  
Sodium pyruvate Pf1N1B4_5312 Putative activity regulator of membrane protease YbbK variable  
Sodium pyruvate Pf1N1B4_5610 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) variable  
Sodium pyruvate Pf1N1B4_5749 Molybdenum cofactor biosynthesis protein MoaB -1.7  
Sodium pyruvate Pf1N1B4_5758 Nitric oxide reductase activation protein NorD variable Yes
Sodium pyruvate Pf1N1B4_5764 Cytochrome cd1 nitrite reductase (EC:1.7.2.1) variable  
Sodium pyruvate Pf1N1B4_5767 Heme d1 biosynthesis protein NirF variable  
Sodium pyruvate Pf1N1B4_5772 Heme d1 biosynthesis protein NirJ variable  
Sodium pyruvate Pf1N1B4_5774 Nitrite reductase associated c-type cytochorome NirN variable  
Sodium pyruvate Pf1N1B4_5854 FIG00960144: hypothetical protein +2.4  
Sodium pyruvate Pf1N1B4_5858 carboxyphosphonoenolpyruvate phosphonomutase, putative variable  
Sodium pyruvate Pf1N1B4_5962 hypothetical protein variable  
Sodium pyruvate Pf1N1B4_654 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein variable  
Sodium pyruvate Pf1N1B4_867 Serine acetyltransferase (EC 2.3.1.30) variable  
Sodium pyruvate Pf1N1B4_920 ATP-dependent RNA helicase RhlB variable