Specific Phenotypes for Bifidobacterium breve UCC2003 in chicken coculture experiments

Condition Gene Description Fitness Cons.
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS10365 LacI family DNA-binding transcriptional regulator variable  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS10400 carbohydrate ABC transporter permease +1.5  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS10560 hypothetical protein -4.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS10725 Lead, cadmium, zinc and mercury transporting ATPase -1.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS10830 ketol-acid reductoisomerase -1.1  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS11160 FadR family transcriptional regulator +3.6  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS11170 2-isopropylmalate synthase -1.7  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS11200 LacI family transcriptional regulator -1.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS11445 TetR/AcrR family transcriptional regulator -1.6  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS11520 P-II family nitrogen regulator -3.0  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS11525 [protein-PII] uridylyltransferase -1.8  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS12055 thioredoxin -1.9  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS12120 aspartate ammonia-lyase -1.5  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS12140 LacI family transcriptional regulator variable  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS12350 acetolactate synthase large subunit -1.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS12385 oxidoreductase -3.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS12405 ribonuclease PH -4.1  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS12515 LacI family transcriptional regulator -2.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS12540 MFS transporter -1.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS12825 hypothetical protein -1.8  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS12870 3-isopropylmalate dehydrogenase +1.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS12990 4-hydroxy-tetrahydrodipicolinate reductase -4.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS13015 peptide deformylase -2.7  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS13100 sugar ABC transporter substrate-binding protein -1.9  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS13110 type III pantothenate kinase -1.8  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS13225 MurR/RpiR family transcriptional regulator variable  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS13355 ABC transporter substrate-binding protein -4.6  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS13715 DUF3107 domain-containing protein +3.0  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS13810 hypothetical protein variable  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS13845 dipeptidase -3.0  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS14000 hypothetical protein variable  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS14170 hemolysin III -4.9  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS14470 hypothetical protein -4.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS15160 PhoH family protein -3.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS15255 glutamate synthase large subunit -3.9  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS15260 glutamate synthase subunit beta -4.0  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS15470 LysR family transcriptional regulator -5.7  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS15480 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -1.4  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS15490 short-chain dehydrogenase +1.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS15510 excinuclease ABC subunit UvrA -2.6  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS15515 excinuclease ABC subunit UvrC -2.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS15525 RNase adapter RapZ -3.7  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS15590 molecular chaperone DnaJ -3.7  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS16140 long-chain fatty acid--CoA ligase -1.7  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS16325 AGE family epimerase/isomerase -4.0  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS16360 sugar ABC transporter substrate-binding protein -1.5  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS16365 alpha-mannosidase -1.4  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS16370 alpha-mannosidase -1.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS16375 alpha-mannosidase -1.6  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS16570 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -2.9  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS16665 Permease of ABC transporter system -1.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS16680 chorismate mutase -1.9  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS16850 peptidase M24 family protein -3.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS17030 bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase PriA variable  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS17045 imidazoleglycerol-phosphate dehydratase -2.7  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS17165 tRNA dihydrouridine synthase DusB -1.7  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS17215 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -1.6  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS17340 polyphosphate kinase 2 family protein -2.0  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS17355 phosphatase PAP2 family protein -1.4  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS17425 cytosine deaminase -2.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS17635 dihydroxy-acid dehydratase -2.1  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS17705 type I-C CRISPR-associated protein Cas7/Csd2 -2.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS17935 long-chain fatty acid--CoA ligase -2.0  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS17995 citrate synthase -4.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS18010 zinc metalloprotease -2.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS18145 MFS transporter -1.4  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS18155 acyl-CoA thioesterase II variable  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS18160 DUF3180 domain-containing protein -1.7  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS18330 PIN domain-containing protein +2.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS18480 LacI family DNA-binding transcriptional regulator variable  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS18495 ROK family protein -2.9  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS18710 hypothetical protein +1.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS18715 transcriptional regulator -1.6  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS18750 pseudouridine synthase -1.9  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS18985 4-alpha-glucanotransferase -1.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS19060 amino acid permease -1.6  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS19255 aminopeptidase -2.0  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS19295 ATP-dependent DNA helicase RecG -2.1  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS19305 ribokinase variable  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS19505 LacI family transcriptional regulator variable  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS19650 NUDIX hydrolase -1.4  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS19710 FAA hydrolase family protein +1.4  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS19830 class II glutamine amidotransferase -1.7  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS19840 TatD family deoxyribonuclease -1.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS19915 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -1.6  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS19935 ABC transporter ATP-binding protein -3.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS19940 ABC transporter ATP-binding protein -3.5  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS20090 DUF4235 domain-containing protein -1.8  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS20140 alpha-galactosidase -1.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS20215 sodium:proton antiporter -1.7  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS20225 phospholipase/carboxylesterase +1.0  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS20350 class 1b ribonucleoside-diphosphate reductase subunit beta -3.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS20355 class 1b ribonucleoside-diphosphate reductase subunit alpha -3.3  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS20360 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -3.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS20365 glutaredoxin family protein -4.2  
diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron BBR_RS20470 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -2.0