Specific Phenotypes for Bifidobacterium breve UCC2003 in chicken experiments

Condition Gene Description Fitness Cons.
diet=StandardDiet; sample=Cecum BBR_RS10560 hypothetical protein -3.7  
diet=StandardDiet; sample=Cecum BBR_RS11160 FadR family transcriptional regulator +3.6  
diet=StandardDiet; sample=Cecum BBR_RS11440 FMN-binding protein +4.0  
diet=StandardDiet; sample=Cecum BBR_RS11485 serine hydrolase -1.7  
diet=StandardDiet; sample=Cecum BBR_RS11520 P-II family nitrogen regulator -2.4  
diet=StandardDiet; sample=Cecum BBR_RS11525 [protein-PII] uridylyltransferase -1.5  
diet=StandardDiet; sample=Cecum BBR_RS12120 aspartate ammonia-lyase -2.3  
diet=StandardDiet; sample=Cecum BBR_RS12145 DUF4976 domain-containing protein -1.2  
diet=StandardDiet; sample=Cecum BBR_RS12495 sugar ABC transporter substrate-binding protein +1.2  
diet=StandardDiet; sample=Cecum BBR_RS12990 4-hydroxy-tetrahydrodipicolinate reductase +1.3  
diet=StandardDiet; sample=Cecum BBR_RS13175 deoxyguanosinetriphosphate triphosphohydrolase -2.1  
diet=StandardDiet; sample=Cecum BBR_RS14030 DNA repair protein RecN -1.7  
diet=StandardDiet; sample=Cecum BBR_RS14170 hemolysin III -3.8  
diet=StandardDiet; sample=Cecum BBR_RS14450 methionine ABC transporter ATP-binding protein +1.5  
diet=StandardDiet; sample=Cecum BBR_RS15100 murein L,D-transpeptidase -1.9  
diet=StandardDiet; sample=Cecum BBR_RS15280 hypothetical protein -2.4  
diet=StandardDiet; sample=Cecum BBR_RS15470 LysR family transcriptional regulator +2.3  
diet=StandardDiet; sample=Cecum BBR_RS15510 excinuclease ABC subunit UvrA -2.0  
diet=StandardDiet; sample=Cecum BBR_RS15515 excinuclease ABC subunit UvrC -1.7  
diet=StandardDiet; sample=Cecum BBR_RS15950 ABC transporter ATP-binding protein -2.1  
diet=StandardDiet; sample=Cecum BBR_RS16325 AGE family epimerase/isomerase -2.4  
diet=StandardDiet; sample=Cecum BBR_RS16350 carbohydrate ABC transporter permease +1.9  
diet=StandardDiet; sample=Cecum BBR_RS16355 sugar ABC transporter permease +1.3  
diet=StandardDiet; sample=Cecum BBR_RS16365 alpha-mannosidase +1.4  
diet=StandardDiet; sample=Cecum BBR_RS16370 alpha-mannosidase +1.5  
diet=StandardDiet; sample=Cecum BBR_RS16375 alpha-mannosidase +1.2  
diet=StandardDiet; sample=Cecum BBR_RS16680 prephenate dehydratase (EC 4.2.1.51) (from data) +2.2  
diet=StandardDiet; sample=Cecum BBR_RS17165 tRNA dihydrouridine synthase DusB -1.3  
diet=StandardDiet; sample=Cecum BBR_RS17425 cytosine deaminase -2.2  
diet=StandardDiet; sample=Cecum BBR_RS18155 acyl-CoA thioesterase II -1.9  
diet=StandardDiet; sample=Cecum BBR_RS18580 sensor histidine kinase +1.7  
diet=StandardDiet; sample=Cecum BBR_RS18770 hypothetical protein -3.0  
diet=StandardDiet; sample=Cecum BBR_RS19295 ATP-dependent DNA helicase RecG -2.0  
diet=StandardDiet; sample=Cecum BBR_RS19440 polysaccharide deacetylase family protein +1.4  
diet=StandardDiet; sample=Cecum BBR_RS19610 diguanylate cyclase +3.2  
diet=StandardDiet; sample=Cecum BBR_RS19930 FAD:protein FMN transferase +3.8  
diet=StandardDiet; sample=Cecum BBR_RS19935 ABC transporter ATP-binding protein -2.2  
diet=StandardDiet; sample=Cecum BBR_RS19940 ABC transporter ATP-binding protein -2.4  
diet=StandardDiet; sample=Cecum BBR_RS20045 ABC transporter permease -1.1  
diet=StandardDiet; sample=Cecum BBR_RS20050 ABC transporter ATP-binding protein -1.9  
diet=StandardDiet; sample=Cecum BBR_RS20350 class 1b ribonucleoside-diphosphate reductase subunit beta -1.5  
diet=StandardDiet; sample=Cecum BBR_RS20355 class 1b ribonucleoside-diphosphate reductase subunit alpha -1.6  
diet=StandardDiet; sample=Cecum BBR_RS20360 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -1.4  
diet=StandardDiet; sample=FecalPellet BBR_RS10400 carbohydrate ABC transporter permease +1.8  
diet=StandardDiet; sample=FecalPellet BBR_RS10405 sugar ABC transporter permease +1.3  
diet=StandardDiet; sample=FecalPellet BBR_RS10560 hypothetical protein -4.9  
diet=StandardDiet; sample=FecalPellet BBR_RS10725 Lead, cadmium, zinc and mercury transporting ATPase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS10790 LacI family transcriptional regulator -1.7  
diet=StandardDiet; sample=FecalPellet BBR_RS11160 FadR family transcriptional regulator +3.9  
diet=StandardDiet; sample=FecalPellet BBR_RS11225 dipeptidase -1.6  
diet=StandardDiet; sample=FecalPellet BBR_RS11440 FMN-binding protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS11485 serine hydrolase -1.1  
diet=StandardDiet; sample=FecalPellet BBR_RS11520 P-II family nitrogen regulator -1.9  
diet=StandardDiet; sample=FecalPellet BBR_RS11525 [protein-PII] uridylyltransferase -1.3  
diet=StandardDiet; sample=FecalPellet BBR_RS11975 hypothetical protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS12055 thioredoxin -1.6  
diet=StandardDiet; sample=FecalPellet BBR_RS12120 aspartate ammonia-lyase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS12140 LacI family transcriptional regulator variable  
diet=StandardDiet; sample=FecalPellet BBR_RS12145 DUF4976 domain-containing protein -1.2  
diet=StandardDiet; sample=FecalPellet BBR_RS12385 oxidoreductase -4.2  
diet=StandardDiet; sample=FecalPellet BBR_RS12405 ribonuclease PH -3.1  
diet=StandardDiet; sample=FecalPellet BBR_RS12495 sugar ABC transporter substrate-binding protein +1.4  
diet=StandardDiet; sample=FecalPellet BBR_RS12845 alpha/beta hydrolase -1.1  
diet=StandardDiet; sample=FecalPellet BBR_RS12990 4-hydroxy-tetrahydrodipicolinate reductase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS13015 peptide deformylase -3.9  
diet=StandardDiet; sample=FecalPellet BBR_RS13065 amino acid ABC transporter ATP-binding protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS13175 deoxyguanosinetriphosphate triphosphohydrolase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS13355 ABC transporter substrate-binding protein -2.8  
diet=StandardDiet; sample=FecalPellet BBR_RS13430 hypothetical protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS13435 hypothetical protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS13440 alpha/beta hydrolase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS13715 DUF3107 domain-containing protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS13810 hypothetical protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS13845 dipeptidase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS14030 DNA repair protein RecN -1.6  
diet=StandardDiet; sample=FecalPellet BBR_RS14155 L-serine ammonia-lyase -3.9  
diet=StandardDiet; sample=FecalPellet BBR_RS14170 hemolysin III -5.6  
diet=StandardDiet; sample=FecalPellet BBR_RS14470 hypothetical protein -4.3  
diet=StandardDiet; sample=FecalPellet BBR_RS14945 peptidase E variable  
diet=StandardDiet; sample=FecalPellet BBR_RS15100 murein L,D-transpeptidase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS15255 glutamate synthase large subunit variable  
diet=StandardDiet; sample=FecalPellet BBR_RS15260 glutamate synthase subunit beta -3.3  
diet=StandardDiet; sample=FecalPellet BBR_RS15280 hypothetical protein -2.8  
diet=StandardDiet; sample=FecalPellet BBR_RS15405 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS15470 LysR family transcriptional regulator variable  
diet=StandardDiet; sample=FecalPellet BBR_RS15510 excinuclease ABC subunit UvrA -3.4  
diet=StandardDiet; sample=FecalPellet BBR_RS15515 excinuclease ABC subunit UvrC -2.3  
diet=StandardDiet; sample=FecalPellet BBR_RS15525 RNase adapter RapZ -5.0  
diet=StandardDiet; sample=FecalPellet BBR_RS15590 molecular chaperone DnaJ -3.8  
diet=StandardDiet; sample=FecalPellet BBR_RS15950 ABC transporter ATP-binding protein -2.5  
diet=StandardDiet; sample=FecalPellet BBR_RS16140 long-chain fatty acid--CoA ligase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS16315 hypothetical protein -2.2  
diet=StandardDiet; sample=FecalPellet BBR_RS16325 AGE family epimerase/isomerase -4.2  
diet=StandardDiet; sample=FecalPellet BBR_RS16350 carbohydrate ABC transporter permease variable  
diet=StandardDiet; sample=FecalPellet BBR_RS16355 sugar ABC transporter permease variable  
diet=StandardDiet; sample=FecalPellet BBR_RS16360 sugar ABC transporter substrate-binding protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS16365 alpha-mannosidase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS16370 alpha-mannosidase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS16570 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -2.8  
diet=StandardDiet; sample=FecalPellet BBR_RS16850 peptidase M24 family protein -2.5  
diet=StandardDiet; sample=FecalPellet BBR_RS17045 imidazoleglycerol-phosphate dehydratase -1.5  
diet=StandardDiet; sample=FecalPellet BBR_RS17165 tRNA dihydrouridine synthase DusB -1.5  
diet=StandardDiet; sample=FecalPellet BBR_RS17200 hydroxyethylthiazole kinase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS17215 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS17220 thiamine-binding protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS17355 phosphatase PAP2 family protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS17425 cytosine deaminase -1.7  
diet=StandardDiet; sample=FecalPellet BBR_RS17705 type I-C CRISPR-associated protein Cas7/Csd2 -1.9  
diet=StandardDiet; sample=FecalPellet BBR_RS17935 long-chain fatty acid--CoA ligase -2.0  
diet=StandardDiet; sample=FecalPellet BBR_RS17995 citrate synthase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS18010 zinc metalloprotease -2.1  
diet=StandardDiet; sample=FecalPellet BBR_RS18145 MFS transporter -1.5  
diet=StandardDiet; sample=FecalPellet BBR_RS18155 acyl-CoA thioesterase II variable  
diet=StandardDiet; sample=FecalPellet BBR_RS18230 SAM-dependent methyltransferase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS18330 PIN domain-containing protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS18560 hypothetical protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS18580 sensor histidine kinase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS18750 pseudouridine synthase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS18770 hypothetical protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19060 amino acid permease variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19255 aminopeptidase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19275 laccase domain-containing protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19295 ATP-dependent DNA helicase RecG -2.2  
diet=StandardDiet; sample=FecalPellet BBR_RS19305 ribokinase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19440 polysaccharide deacetylase family protein +1.3  
diet=StandardDiet; sample=FecalPellet BBR_RS19610 diguanylate cyclase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19650 NUDIX hydrolase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19690 glycerophosphodiester phosphodiesterase -1.3  
diet=StandardDiet; sample=FecalPellet BBR_RS19840 TatD family deoxyribonuclease -1.0  
diet=StandardDiet; sample=FecalPellet BBR_RS19850 ABC transporter ATP-binding protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19915 16S rRNA (cytidine(1402)-2'-O)-methyltransferase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19930 FAD:protein FMN transferase variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19935 ABC transporter ATP-binding protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS19940 ABC transporter ATP-binding protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS20100 YhgE/Pip domain-containing protein variable  
diet=StandardDiet; sample=FecalPellet BBR_RS20105 YhgE/Pip domain-containing protein -2.9  
diet=StandardDiet; sample=FecalPellet BBR_RS20215 sodium:proton antiporter -1.6  
diet=StandardDiet; sample=FecalPellet BBR_RS20225 phospholipase/carboxylesterase +1.0  
diet=StandardDiet; sample=FecalPellet BBR_RS20350 class 1b ribonucleoside-diphosphate reductase subunit beta -4.5  
diet=StandardDiet; sample=FecalPellet BBR_RS20355 class 1b ribonucleoside-diphosphate reductase subunit alpha -4.7  
diet=StandardDiet; sample=FecalPellet BBR_RS20360 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -4.4  
diet=StandardDiet; sample=FecalPellet BBR_RS20365 glutaredoxin family protein -4.5  
diet=StandardDiet; sample=FecalPellet BBR_RS20470 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -1.4  
diet=StandardDiet; sample=FecalPellet BBR_RS21120 hypothetical protein -2.2  
diet=StandardDiet; sample=Small_intestine BBR_RS10560 hypothetical protein -3.4  
diet=StandardDiet; sample=Small_intestine BBR_RS11160 FadR family transcriptional regulator +3.5  
diet=StandardDiet; sample=Small_intestine BBR_RS11440 FMN-binding protein +4.1  
diet=StandardDiet; sample=Small_intestine BBR_RS11485 serine hydrolase -1.7  
diet=StandardDiet; sample=Small_intestine BBR_RS11520 P-II family nitrogen regulator -2.0  
diet=StandardDiet; sample=Small_intestine BBR_RS11525 [protein-PII] uridylyltransferase -1.6  
diet=StandardDiet; sample=Small_intestine BBR_RS12120 aspartate ammonia-lyase -2.1  
diet=StandardDiet; sample=Small_intestine BBR_RS12145 DUF4976 domain-containing protein -1.3  
diet=StandardDiet; sample=Small_intestine BBR_RS12495 sugar ABC transporter substrate-binding protein +1.1  
diet=StandardDiet; sample=Small_intestine BBR_RS12515 LacI family transcriptional regulator -1.6  
diet=StandardDiet; sample=Small_intestine BBR_RS12990 4-hydroxy-tetrahydrodipicolinate reductase +1.4  
diet=StandardDiet; sample=Small_intestine BBR_RS13795 ABC transporter ATP-binding protein -3.0  
diet=StandardDiet; sample=Small_intestine BBR_RS14030 DNA repair protein RecN -1.5  
diet=StandardDiet; sample=Small_intestine BBR_RS14155 L-serine ammonia-lyase -3.7  
diet=StandardDiet; sample=Small_intestine BBR_RS14170 hemolysin III -3.6  
diet=StandardDiet; sample=Small_intestine BBR_RS14450 methionine ABC transporter ATP-binding protein +1.5  
diet=StandardDiet; sample=Small_intestine BBR_RS14455 ABC transporter permease +1.6  
diet=StandardDiet; sample=Small_intestine BBR_RS15100 murein L,D-transpeptidase -1.6  
diet=StandardDiet; sample=Small_intestine BBR_RS15280 hypothetical protein -3.0  
diet=StandardDiet; sample=Small_intestine BBR_RS15470 LysR family transcriptional regulator +2.4  
diet=StandardDiet; sample=Small_intestine BBR_RS15510 excinuclease ABC subunit UvrA -2.1  
diet=StandardDiet; sample=Small_intestine BBR_RS15515 excinuclease ABC subunit UvrC -1.4  
diet=StandardDiet; sample=Small_intestine BBR_RS16325 AGE family epimerase/isomerase -2.4  
diet=StandardDiet; sample=Small_intestine BBR_RS16350 carbohydrate ABC transporter permease +1.8  
diet=StandardDiet; sample=Small_intestine BBR_RS16355 sugar ABC transporter permease +1.5  
diet=StandardDiet; sample=Small_intestine BBR_RS16365 alpha-mannosidase +1.3  
diet=StandardDiet; sample=Small_intestine BBR_RS16370 alpha-mannosidase +1.3  
diet=StandardDiet; sample=Small_intestine BBR_RS16680 prephenate dehydratase (EC 4.2.1.51) (from data) +2.4  
diet=StandardDiet; sample=Small_intestine BBR_RS17165 tRNA dihydrouridine synthase DusB -1.4  
diet=StandardDiet; sample=Small_intestine BBR_RS17425 cytosine deaminase -1.9  
diet=StandardDiet; sample=Small_intestine BBR_RS17955 endonuclease/exonuclease/phosphatase family protein -1.5  
diet=StandardDiet; sample=Small_intestine BBR_RS18155 acyl-CoA thioesterase II -1.3  
diet=StandardDiet; sample=Small_intestine BBR_RS18580 sensor histidine kinase +1.6  
diet=StandardDiet; sample=Small_intestine BBR_RS18770 hypothetical protein -3.2  
diet=StandardDiet; sample=Small_intestine BBR_RS19295 ATP-dependent DNA helicase RecG -2.1  
diet=StandardDiet; sample=Small_intestine BBR_RS19440 polysaccharide deacetylase family protein +1.4  
diet=StandardDiet; sample=Small_intestine BBR_RS19610 diguanylate cyclase +3.1  
diet=StandardDiet; sample=Small_intestine BBR_RS19930 FAD:protein FMN transferase +3.7  
diet=StandardDiet; sample=Small_intestine BBR_RS19935 ABC transporter ATP-binding protein -2.2  
diet=StandardDiet; sample=Small_intestine BBR_RS19940 ABC transporter ATP-binding protein -2.2  
diet=StandardDiet; sample=Small_intestine BBR_RS20045 ABC transporter permease -1.1  
diet=StandardDiet; sample=Small_intestine BBR_RS20050 ABC transporter ATP-binding protein -1.5  
diet=StandardDiet; sample=Small_intestine BBR_RS20350 class 1b ribonucleoside-diphosphate reductase subunit beta -1.4  
diet=StandardDiet; sample=Small_intestine BBR_RS20355 class 1b ribonucleoside-diphosphate reductase subunit alpha -1.5  
diet=StandardDiet; sample=Small_intestine BBR_RS20360 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -1.7  
diet=StandardDiet; sample=Small_intestine BBR_RS20365 glutaredoxin family protein -1.7