Specific Phenotypes for Pseudomonas fluorescens FW300-N2E2 in carbon source experiments

Condition Gene Description Fitness Cons.
Pf6N2E2_1239 Putative TEGT family carrier/transport protein -2.4  
Pf6N2E2_2025 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) -1.2  
Pf6N2E2_3627 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) -2.5  
Pf6N2E2_5277 FIG00953110: hypothetical protein -1.4  
4-Hydroxybenzoic Acid Pf6N2E2_2829 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) -4.6 Yes
4-Hydroxybenzoic Acid Pf6N2E2_2830 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) -4.2 Yes
4-Hydroxybenzoic Acid Pf6N2E2_2832 dicarboxylic acid transporter PcaT -2.1  
4-Hydroxybenzoic Acid Pf6N2E2_2833 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) -4.8 Yes
4-Hydroxybenzoic Acid Pf6N2E2_2834 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) -3.8 Yes
4-Hydroxybenzoic Acid Pf6N2E2_2836 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6); Glutaconate CoA-transferase subunit B (EC 2.8.3.12) -4.5  
4-Hydroxybenzoic Acid Pf6N2E2_2837 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12) -3.9  
4-Hydroxybenzoic Acid Pf6N2E2_2839 Pca regulon regulatory protein PcaR -4.7 Yes
4-Hydroxybenzoic Acid Pf6N2E2_2877 Membrane fusion component of tripartite multidrug resistance system -1.4 Yes
4-Hydroxybenzoic Acid Pf6N2E2_2879 membrane protein, putative -1.7 Yes
4-Hydroxybenzoic Acid Pf6N2E2_2913 Transcriptional regulator PobR, AraC family -3.5 Yes
4-Hydroxybenzoic Acid Pf6N2E2_2914 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) (from data) -4.3 Yes
4-Hydroxybenzoic Acid Pf6N2E2_4766 Acyl-CoA dehydrogenase (EC 1.3.8.7) -2.1  
Carnitine Hydrochloride Pf6N2E2_2040 D-beta-hydroxybutyrate permease -1.6  
Carnitine Hydrochloride Pf6N2E2_2042 Acetoacetyl-CoA synthetase (EC 6.2.1.16) -1.9 Yes
Carnitine Hydrochloride Pf6N2E2_2112 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) -2.9 Yes
Carnitine Hydrochloride Pf6N2E2_2113 Acetyl-CoA acetyltransferase (EC 2.3.1.9) -1.2 Yes
Carnitine Hydrochloride Pf6N2E2_3044 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) -1.3  
Carnitine Hydrochloride Pf6N2E2_3045 Transcriptional regulator, LysR family, in formaldehyde detoxification operon -1.4  
Carnitine Hydrochloride Pf6N2E2_3871 FIG00553872: hypothetical protein -1.7  
Carnitine Hydrochloride Pf6N2E2_4681 ABC transporter for Carnitine, ATPase component (from data) -7.0 Yes
Carnitine Hydrochloride Pf6N2E2_4682 ABC transporter for Carnitine, permease component (from data) -7.2 Yes
Carnitine Hydrochloride Pf6N2E2_4683 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) -4.5 Yes
Carnitine Hydrochloride Pf6N2E2_4685 L-serine dehydratase (EC 4.3.1.17) -1.3 Yes
Carnitine Hydrochloride Pf6N2E2_4686 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain -7.5 Yes
Carnitine Hydrochloride Pf6N2E2_4687 FIG00953780: hypothetical protein +1.1  
Carnitine Hydrochloride Pf6N2E2_4688 Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1) +1.6  
Carnitine Hydrochloride Pf6N2E2_4689 L-carnitine 3-dehydrogenase, B subunit (EC 1.1.1.108) (from data) -5.9 Yes
Carnitine Hydrochloride Pf6N2E2_4690 L-carnitine 3-dehydrogenase, A subunit (EC 1.1.1.108) (from data) -5.5 Yes
Carnitine Hydrochloride Pf6N2E2_4692 dehydrocarnitine cleavage enzyme (EC 2.3.1.-) (from data) -6.9 Yes
Carnitine Hydrochloride Pf6N2E2_4693 ABC transporter for Carnitine Hydrochloride, periplasmic substrate-binding component (from data) -3.7 Yes
Carnitine Hydrochloride Pf6N2E2_4694 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain -6.6 Yes
Carnitine Hydrochloride Pf6N2E2_4700 Microsomal dipeptidase (EC 3.4.13.19) -4.3 Yes
Carnitine Hydrochloride Pf6N2E2_4701 FIG00953113: hypothetical protein -4.5 Yes
Carnitine Hydrochloride Pf6N2E2_4702 DgcA Dimethylglycine demethylase subunit A -3.9 Yes
Carnitine Hydrochloride Pf6N2E2_4704 Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data) -4.9 Yes
Carnitine Hydrochloride Pf6N2E2_4705 Electron transfer flavoprotein, alpha subunit -4.7 Yes
Carnitine Hydrochloride Pf6N2E2_4713 GbcA Glycine betaine demethylase subunit A -4.4 Yes
Carnitine Hydrochloride Pf6N2E2_4714 GbcB Glycine betaine demethylase subunit B -4.4 Yes
Carnitine Hydrochloride Pf6N2E2_4717 Serine hydroxymethyltransferase (EC 2.1.2.1) -3.9 Yes
Carnitine Hydrochloride Pf6N2E2_4718 Sarcosine oxidase beta subunit (EC 1.5.3.1) -5.2 Yes
Carnitine Hydrochloride Pf6N2E2_4719 Sarcosine oxidase delta subunit (EC 1.5.3.1) -4.7 Yes
Carnitine Hydrochloride Pf6N2E2_4720 Sarcosine oxidase alpha subunit (EC 1.5.3.1) -3.9 Yes
Carnitine Hydrochloride Pf6N2E2_5260 Phosphate acetyltransferase (EC 2.3.1.8) -4.1 Yes
D-Alanine Pf6N2E2_1382 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) variable  
D-Alanine Pf6N2E2_1386 amino acid ABC transporter, periplasmic substrate-binding protein variable  
D-Alanine Pf6N2E2_1394 FIG00953323: hypothetical protein variable  
D-Alanine Pf6N2E2_2389 Phosphoenolpyruvate synthase (EC 2.7.9.2) variable Yes
D-Alanine Pf6N2E2_2533 Rhodanese domain protein UPF0176 +1.3  
D-Alanine Pf6N2E2_2684 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) variable  
D-Alanine Pf6N2E2_2764 Tricarboxylate transport sensor protein TctE -1.2  
D-Alanine Pf6N2E2_2923 ABC transporter for L-leucine/L-phenylalanine/D-alanine, permease component 1 LivH (from data) -1.6 Yes
D-Alanine Pf6N2E2_2924 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, permease component 2 LivM (from data) -1.4 Yes
D-Alanine Pf6N2E2_2926 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 2 LivF (from data) -1.7 Yes
D-Alanine Pf6N2E2_3334 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) +1.2  
D-Alanine Pf6N2E2_3576 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) -1.2 Yes
D-Alanine Pf6N2E2_3577 ABC transporter for L-leucine/L-isoleucine/D-alanine, ATPase component 1 LivG (from data) -1.1 Yes
D-Alanine Pf6N2E2_3613 GTP-binding protein HflX -1.9 Yes
D-Alanine Pf6N2E2_3903 Ribosomal protein S6 glutaminyl transferase variable  
D-Alanine Pf6N2E2_4097 FIG00953365: hypothetical protein -1.8  
D-Alanine Pf6N2E2_424 Decarboxylase family protein +1.7  
D-Alanine Pf6N2E2_4388 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) -1.4  
D-Alanine Pf6N2E2_4390 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system -5.9 Yes
D-Alanine Pf6N2E2_4437 Twin-arginine translocation protein TatB variable  
D-Alanine Pf6N2E2_4632 Amine oxidase [flavin-containing] (EC 1.4.3.4) +1.1  
D-Alanine Pf6N2E2_4772 Coenzyme PQQ synthesis protein E variable  
D-Alanine Pf6N2E2_4774 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) variable  
D-Alanine Pf6N2E2_4775 Coenzyme PQQ synthesis protein B variable  
D-Alanine Pf6N2E2_4813 Probable two-component sensor, near polyamine transporter +2.6  
D-Alanine Pf6N2E2_5365 Heavy metal sensor histidine kinase variable  
D-Alanine Pf6N2E2_5401 phospholipase/carboxylesterase family protein -1.4  
D-Alanine Pf6N2E2_5402 ABC transporter for D-Alanine, periplasmic substrate-binding component (from data) -3.1  
D-Alanine Pf6N2E2_5403 ABC transporter for D-Alanine, permease component 2 (from data) -3.7  
D-Alanine Pf6N2E2_5404 ABC transporter for D-Alanine, permease component 1 (from data) -3.1  
D-Alanine Pf6N2E2_5405 ABC transporter for D-Alanine, ATPase component (from data) -4.8  
D-Alanine Pf6N2E2_5459 D-serine/D-alanine/glycine transporter -4.4 Yes
D-Alanine Pf6N2E2_65 SAM-dependent methyltransferase YafE (UbiE paralog) -1.6  
D-Alanine Pf6N2E2_694 Outer membrane protein (porin) variable  
D-Fructose Pf6N2E2_1001 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) +8.6  
D-Fructose Pf6N2E2_1002 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) +8.2  
D-Fructose Pf6N2E2_1386 amino acid ABC transporter, periplasmic substrate-binding protein +1.8  
D-Fructose Pf6N2E2_1442 Transcriptional regulators of sugar metabolism +6.1  
D-Fructose Pf6N2E2_2166 protein of unknown function DUF6, transmembrane +1.6  
D-Fructose Pf6N2E2_2399 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase +1.8  
D-Fructose Pf6N2E2_2466 Universal stress protein family +2.3  
D-Fructose Pf6N2E2_2470 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) +2.7 Yes
D-Fructose Pf6N2E2_2524 S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase +1.3  
D-Fructose Pf6N2E2_2533 Rhodanese domain protein UPF0176 +1.5  
D-Fructose Pf6N2E2_2684 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) +1.2  
D-Fructose Pf6N2E2_3035 DNA mismatch repair protein MutS +1.1  
D-Fructose Pf6N2E2_3180 Type IV pilus biogenesis protein PilF +1.5  
D-Fructose Pf6N2E2_3613 GTP-binding protein HflX -2.0  
D-Fructose Pf6N2E2_4357 Nucleoside-diphosphate-sugar epimerases +2.3  
D-Fructose Pf6N2E2_4772 Coenzyme PQQ synthesis protein E +3.5  
D-Fructose Pf6N2E2_4774 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) +3.0  
D-Fructose Pf6N2E2_4775 Coenzyme PQQ synthesis protein B +2.4  
D-Fructose Pf6N2E2_4980 hypothetical protein +2.4  
D-Fructose Pf6N2E2_5365 Heavy metal sensor histidine kinase +3.4  
D-Fructose Pf6N2E2_5435 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) +1.6  
D-Fructose Pf6N2E2_69 Probable type IV pilus assembly FimV-related transmembrane protein +1.6  
D-Fructose Pf6N2E2_694 Outer membrane protein (porin) +1.7  
D-Fructose Pf6N2E2_804 Fructokinase (EC 2.7.1.4) +5.9 Yes
D-Fructose Pf6N2E2_805 Xylulose kinase (EC 2.7.1.17) (from data) +5.5 Yes
D-Fructose Pf6N2E2_806 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) +7.1 Yes
D-Fructose Pf6N2E2_808 Various polyols ABC transporter, permease component 2 -1.0  
D-Galactose Pf6N2E2_1386 amino acid ABC transporter, periplasmic substrate-binding protein +1.7  
D-Galactose Pf6N2E2_1605 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) +1.6  
D-Galactose Pf6N2E2_168 hypothetical protein +1.2  
D-Galactose Pf6N2E2_1915 Dienelactone hydrolase and related enzymes +1.1  
D-Galactose Pf6N2E2_1916 Transcriptional regulator, LysR family +2.9  
D-Galactose Pf6N2E2_2044 Histidine kinase/response regulator hybrid protein +2.4  
D-Galactose Pf6N2E2_2133 Putative sulfate permease +2.1  
D-Galactose Pf6N2E2_2166 protein of unknown function DUF6, transmembrane +2.0  
D-Galactose Pf6N2E2_2167 hypothetical protein +1.4  
D-Galactose Pf6N2E2_2192 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) +1.4  
D-Galactose Pf6N2E2_2193 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) +2.0  
D-Galactose Pf6N2E2_2194 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) +1.7  
D-Galactose Pf6N2E2_2446 Aspartate aminotransferase (EC 2.6.1.1) +1.3 Yes
D-Galactose Pf6N2E2_2466 Universal stress protein family +2.0  
D-Galactose Pf6N2E2_2470 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) +3.3  
D-Galactose Pf6N2E2_2524 S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase +1.9  
D-Galactose Pf6N2E2_2533 Rhodanese domain protein UPF0176 +1.9  
D-Galactose Pf6N2E2_2599 Flagellar biosynthesis protein FliS +1.4  
D-Galactose Pf6N2E2_2684 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) +1.2  
D-Galactose Pf6N2E2_2699 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO +2.5  
D-Galactose Pf6N2E2_2727 Ribonuclease D (EC 3.1.26.3) -1.9  
D-Galactose Pf6N2E2_2837 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12) +1.5  
D-Galactose Pf6N2E2_2840 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) +1.5  
D-Galactose Pf6N2E2_2886 Phosphogluconate repressor HexR, RpiR family +2.6  
D-Galactose Pf6N2E2_2888 Glucose-selective porin OprB +2.3  
D-Galactose Pf6N2E2_3081 HesA/MoeB/ThiF family protein related to EC-YgdL +1.4  
D-Galactose Pf6N2E2_3093 Transcriptional regulator, TetR family -1.7  
D-Galactose Pf6N2E2_3157 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase +1.3  
D-Galactose Pf6N2E2_3158 tRNA (5-methoxyuridine) 34 synthase +1.3  
D-Galactose Pf6N2E2_3180 Type IV pilus biogenesis protein PilF +1.7  
D-Galactose Pf6N2E2_3489 FIG00956297: hypothetical protein +1.2  
D-Galactose Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) +2.0  
D-Galactose Pf6N2E2_3560 membrane protein, putative +1.8  
D-Galactose Pf6N2E2_3613 GTP-binding protein HflX -2.1  
D-Galactose Pf6N2E2_3619 NAD(P)HX epimerase / NAD(P)HX dehydratase +1.4  
D-Galactose Pf6N2E2_3692 Selenoprotein O and cysteine-containing homologs -1.0  
D-Galactose Pf6N2E2_3903 Ribosomal protein S6 glutaminyl transferase +1.7  
D-Galactose Pf6N2E2_4097 FIG00953365: hypothetical protein +2.4  
D-Galactose Pf6N2E2_4233 sulfatase domain protein, putative -1.0  
D-Galactose Pf6N2E2_4302 Uncharacterized protein ImpH/VasB +1.2  
D-Galactose Pf6N2E2_4357 Nucleoside-diphosphate-sugar epimerases +1.9  
D-Galactose Pf6N2E2_4374 Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2) +1.1  
D-Galactose Pf6N2E2_4437 Twin-arginine translocation protein TatB +1.4  
D-Galactose Pf6N2E2_4480 Xaa-Pro aminopeptidase (EC 3.4.11.9) -1.4  
D-Galactose Pf6N2E2_4485 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) -2.7  
D-Galactose Pf6N2E2_4486 Glycine cleavage system H protein +1.9  
D-Galactose Pf6N2E2_4580 FIG015287: Zinc protease -1.7  
D-Galactose Pf6N2E2_4581 FIG015547: peptidase, M16 family -1.8  
D-Galactose Pf6N2E2_4617 Signal transduction histidine kinase CheA (EC 2.7.3.-) +1.5  
D-Galactose Pf6N2E2_4772 Coenzyme PQQ synthesis protein E +3.7  
D-Galactose Pf6N2E2_4774 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) +3.3  
D-Galactose Pf6N2E2_4775 Coenzyme PQQ synthesis protein B +2.8  
D-Galactose Pf6N2E2_4809 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases -2.0  
D-Galactose Pf6N2E2_4821 Phosphoglycolate phosphatase (EC 3.1.3.18) +1.9  
D-Galactose Pf6N2E2_4822 Anthranilate synthase, aminase component (EC 4.1.3.27) +1.3  
D-Galactose Pf6N2E2_4980 hypothetical protein +4.6  
D-Galactose Pf6N2E2_5025 Sensor histidine kinase -1.9  
D-Galactose Pf6N2E2_529 FIG00954439: hypothetical protein +2.6  
D-Galactose Pf6N2E2_5365 Heavy metal sensor histidine kinase +1.8  
D-Galactose Pf6N2E2_5386 Alginate biosynthesis protein Alg44 +1.8  
D-Galactose Pf6N2E2_5387 Alginate biosynthesis protein Alg8 +1.8  
D-Galactose Pf6N2E2_5388 GDP-mannose 6-dehydrogenase (EC 1.1.1.132) +1.1  
D-Galactose Pf6N2E2_5435 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) +1.6  
D-Galactose Pf6N2E2_5448 hypothetical protein +2.3  
D-Galactose Pf6N2E2_5556 Aminomethyltransferase (EC 2.1.2.10) (from data) +1.2  
D-Galactose Pf6N2E2_5966 L-arabinolactonase (EC 3.1.1.15) (from data) -2.9 Yes
D-Galactose Pf6N2E2_5968 ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data) -2.0 Yes
D-Galactose Pf6N2E2_5969 ABC transporter for D-galactose/L-arabinose, ATPase component (from data) -1.7 Yes
D-Galactose Pf6N2E2_5970 ABC transporter for D-galactose/L-arabinose, permease component (from data) -2.4 Yes
D-Galactose Pf6N2E2_5976 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) -4.2 Yes
D-Galactose Pf6N2E2_5977 Galactonate dehydratase (EC 4.2.1.6) -3.0 Yes
D-Galactose Pf6N2E2_5978 Hexuronate transporter -3.3 Yes
D-Galactose Pf6N2E2_608 Transcriptional regulator of the arabinose operon in Shewanella, GntR family +3.2  
D-Galactose Pf6N2E2_691 D-galactarate permease +1.1  
D-Galactose Pf6N2E2_692 Glucarate dehydratase (EC 4.2.1.40) +2.4  
D-Galactose Pf6N2E2_694 Outer membrane protein (porin) +2.8  
D-Galactose Pf6N2E2_755 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide -1.4  
D-Galactose Pf6N2E2_806 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) +2.2  
D-Glucosamine Hydrochloride Pf6N2E2_1382 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) +1.3  
D-Glucosamine Hydrochloride Pf6N2E2_1386 amino acid ABC transporter, periplasmic substrate-binding protein +2.2  
D-Glucosamine Hydrochloride Pf6N2E2_1442 Transcriptional regulators of sugar metabolism +9.3  
D-Glucosamine Hydrochloride Pf6N2E2_2047 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) -2.8 Yes
D-Glucosamine Hydrochloride Pf6N2E2_2051 ABC transporter for D-Glucosamine Hydrochloride, permease component 1 (from data) -2.8 Yes
D-Glucosamine Hydrochloride Pf6N2E2_2052 ABC transporter for D-Glucosamine Hydrochloride, permease component 2 (from data) -2.8 Yes
D-Glucosamine Hydrochloride Pf6N2E2_2053 ABC transporter for D-Glucosamine, periplasmic substrate-binding component (from data) -1.9 Yes
D-Glucosamine Hydrochloride Pf6N2E2_2466 Universal stress protein family +2.1  
D-Glucosamine Hydrochloride Pf6N2E2_2533 Rhodanese domain protein UPF0176 +1.7  
D-Glucosamine Hydrochloride Pf6N2E2_2712 Permeases of the major facilitator superfamily +1.8  
D-Glucosamine Hydrochloride Pf6N2E2_3337 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) variable Yes
D-Glucosamine Hydrochloride Pf6N2E2_3339 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) variable  
D-Glucosamine Hydrochloride Pf6N2E2_4357 Nucleoside-diphosphate-sugar epimerases +1.1  
D-Glucosamine Hydrochloride Pf6N2E2_4430 Autolysis response regulater LytR +1.3  
D-Glucosamine Hydrochloride Pf6N2E2_4480 Xaa-Pro aminopeptidase (EC 3.4.11.9) -1.1  
D-Glucosamine Hydrochloride Pf6N2E2_4772 Coenzyme PQQ synthesis protein E +2.6 Yes
D-Glucosamine Hydrochloride Pf6N2E2_4774 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) +2.3  
D-Glucosamine Hydrochloride Pf6N2E2_4775 Coenzyme PQQ synthesis protein B +1.7  
D-Glucosamine Hydrochloride Pf6N2E2_4980 hypothetical protein +1.3  
D-Glucosamine Hydrochloride Pf6N2E2_5365 Heavy metal sensor histidine kinase +4.4  
D-Glucosamine Hydrochloride Pf6N2E2_694 Outer membrane protein (porin) +1.6  
D-Glucosamine Hydrochloride Pf6N2E2_806 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) variable  
D-Glucose Pf6N2E2_1717 Anthranilate synthase, aminase component (EC 4.1.3.27) -1.5  
D-Glucose Pf6N2E2_2057 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes +1.5  
D-Mannose Pf6N2E2_1442 Transcriptional regulators of sugar metabolism +13.1 Yes
D-Mannose Pf6N2E2_2894 N-acylglucosamine 2-epimerase (EC 5.1.3.8) -4.4 Yes
D-Mannose Pf6N2E2_3035 DNA mismatch repair protein MutS +3.5  
D-Mannose Pf6N2E2_3337 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) +4.9 Yes
D-Mannose Pf6N2E2_3339 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) +5.4 Yes
D-Mannose Pf6N2E2_806 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) +3.2 Yes
D-Mannose Pf6N2E2_807 Various polyols ABC transporter, ATP-binding component +1.9 Yes
D-Mannose Pf6N2E2_808 Various polyols ABC transporter, permease component 2 +1.7 Yes
D-Mannose Pf6N2E2_809 Various polyols ABC transporter, permease component 1 +2.0 Yes
D-Mannose Pf6N2E2_810 Various polyols ABC transporter, periplasmic substrate-binding protein +1.4 Yes
D-Sorbitol Pf6N2E2_1960 ABC transporter for D-sorbitol, ATPase component (from data) -4.4 Yes
D-Sorbitol Pf6N2E2_1961 ABC transporter for D-sorbitol, permease component 2 (from data) -5.0 Yes
D-Sorbitol Pf6N2E2_1963 ABC transporter for D-sorbitol, periplasmic substrate-binding component (from data) -4.5 Yes
D-Sorbitol Pf6N2E2_1965 Fructokinase (EC 2.7.1.4) (from data) -3.8 Yes
D-Sorbitol Pf6N2E2_2057 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes +2.0  
D-Sorbitol Pf6N2E2_4334 Uncharacterized protein ImpC +1.0  
D-Sorbitol Pf6N2E2_4335 Uncharacterized protein ImpB +1.2  
D-Trehalose dihydrate Pf6N2E2_1382 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) +1.3  
D-Trehalose dihydrate Pf6N2E2_1386 amino acid ABC transporter, periplasmic substrate-binding protein +1.6  
D-Xylose Pf6N2E2_1382 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) +1.2  
D-Xylose Pf6N2E2_1386 amino acid ABC transporter, periplasmic substrate-binding protein +1.7  
D-Xylose Pf6N2E2_1394 FIG00953323: hypothetical protein +1.3  
D-Xylose Pf6N2E2_1664 Nitrate/nitrite transporter -3.0  
D-Xylose Pf6N2E2_1665 hypothetical protein -3.8  
D-Xylose Pf6N2E2_1666 Transcriptional regulator, LysR family -3.0  
D-Xylose Pf6N2E2_1668 Xylonate dehydratase (EC 4.2.1.82) (from data) -3.0 Yes
D-Xylose Pf6N2E2_2257 tRNA dihydrouridine synthase A +1.1 Yes
D-Xylose Pf6N2E2_3613 GTP-binding protein HflX -1.5  
D-Xylose Pf6N2E2_4772 Coenzyme PQQ synthesis protein E +1.4  
D-Xylose Pf6N2E2_4980 hypothetical protein +1.7  
D-Xylose Pf6N2E2_5979 D-galactonate regulator, IclR family +1.7 Yes
D-Xylose Pf6N2E2_694 Outer membrane protein (porin) +1.3  
D-Xylose Pf6N2E2_805 Xylulose kinase (EC 2.7.1.17) (from data) -2.2 Yes
Glycerol Pf6N2E2_4555 Lysophospholipase (EC 3.1.1.5) -2.2 Yes
Glycerol Pf6N2E2_682 Predicted regulator PutR for proline utilization, GntR family +1.5  
L-Alanine Pf6N2E2_4086 sodium/alanine transporter +1.5  
L-Alanine Pf6N2E2_4390 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system -5.5 Yes
L-Alanine Pf6N2E2_4510 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) +1.5  
L-Alanine Pf6N2E2_5459 D-serine/D-alanine/glycine transporter -3.2 Yes
L-Alanine Pf6N2E2_5860 Branched-chain amino acid transport system carrier protein +1.5 Yes
L-Arabinose Pf6N2E2_2166 protein of unknown function DUF6, transmembrane -1.6  
L-Arabinose Pf6N2E2_5966 L-arabinolactonase (EC 3.1.1.15) (from data) -3.7 Yes
L-Arabinose Pf6N2E2_5968 ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data) -2.3 Yes
L-Arabinose Pf6N2E2_5969 ABC transporter for D-galactose/L-arabinose, ATPase component (from data) -2.3 Yes
L-Arabinose Pf6N2E2_5970 ABC transporter for D-galactose/L-arabinose, permease component (from data) -2.3 Yes
L-Arabinose Pf6N2E2_609 L-arabonate dehydratase (EC 4.2.1.25) (from data) -4.6 Yes
L-Arabinose Pf6N2E2_610 Nitrate/nitrite transporter -2.8 Yes
L-Arabinose Pf6N2E2_612 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) -7.0 Yes
L-Asparagine Pf6N2E2_4086 sodium/alanine transporter -4.1 Yes
L-Asparagine Pf6N2E2_4087 L-asparaginase (EC 3.5.1.1) (from data) -4.7 Yes
L-Glutamine Pf6N2E2_1155 Cyn operon transcriptional activator -2.6  
L-Glutamine Pf6N2E2_2102 Glutaminase (EC 3.5.1.2) (from data) -1.8 Yes
L-Glutamine Pf6N2E2_2709 Sialic acid transporter (permease) NanT -1.6  
L-Glutamine Pf6N2E2_4086 sodium/alanine transporter -1.4 Yes
L-Histidine Pf6N2E2_1382 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) +1.3  
L-Histidine Pf6N2E2_1386 amino acid ABC transporter, periplasmic substrate-binding protein +1.7  
L-Histidine Pf6N2E2_2389 Phosphoenolpyruvate synthase (EC 2.7.9.2) +1.9  
L-Histidine Pf6N2E2_2684 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) +1.2  
L-Histidine Pf6N2E2_3797 N-formylglutamate deformylase (EC 3.5.1.68) (from data) -3.8 Yes
L-Histidine Pf6N2E2_3798 Imidazolonepropionase (EC 3.5.2.7) (from data) -3.8 Yes
L-Histidine Pf6N2E2_3799 Histidine ammonia-lyase (EC 4.3.1.3) (from data) -5.7 Yes
L-Histidine Pf6N2E2_3803 Histidine ABC transporter, histidine-binding protein (TC 3.A.1) -2.5 Yes
L-Histidine Pf6N2E2_3804 Cytosine/purine/uracil/thiamine/allantoin permease family protein -5.1 Yes
L-Histidine Pf6N2E2_3805 Urocanate hydratase (EC 4.2.1.49) (from data) -4.4 Yes
L-Histidine Pf6N2E2_3808 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) -4.5 Yes
L-Histidine Pf6N2E2_3903 Ribosomal protein S6 glutaminyl transferase +1.5  
L-Histidine Pf6N2E2_4169 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) -1.2  
L-Histidine Pf6N2E2_4772 Coenzyme PQQ synthesis protein E +2.3  
L-Histidine Pf6N2E2_4774 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) +2.0  
L-Histidine Pf6N2E2_4775 Coenzyme PQQ synthesis protein B +1.6 Yes
L-Histidine Pf6N2E2_5365 Heavy metal sensor histidine kinase +1.4  
L-Histidine Pf6N2E2_5401 phospholipase/carboxylesterase family protein -1.1 Yes
L-Histidine Pf6N2E2_5402 ABC transporter for D-Alanine, periplasmic substrate-binding component (from data) -1.5 Yes
L-Histidine Pf6N2E2_5403 ABC transporter for D-Alanine, permease component 2 (from data) -1.9 Yes
L-Histidine Pf6N2E2_5404 ABC transporter for D-Alanine, permease component 1 (from data) -1.5 Yes
L-Histidine Pf6N2E2_5405 ABC transporter for D-Alanine, ATPase component (from data) -1.8  
L-Histidine Pf6N2E2_5878 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein -1.1  
L-Isoleucine Pf6N2E2_1138 Transcriptional regulator, AraC family -1.4 Yes
L-Isoleucine Pf6N2E2_1143 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases -1.7 Yes
L-Isoleucine Pf6N2E2_1146 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) -2.9 Yes
L-Isoleucine Pf6N2E2_2712 Permeases of the major facilitator superfamily +1.7  
L-Isoleucine Pf6N2E2_480 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) (from data) -5.3 Yes
L-Isoleucine Pf6N2E2_481 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) -6.0 Yes
L-Isoleucine Pf6N2E2_6061 Methylisocitrate lyase (EC 4.1.3.30) (from data) -1.4 Yes
L-Leucine Pf6N2E2_1100 L-rhamnose operon transcriptional activator RhaR +2.6 Yes
L-Leucine Pf6N2E2_1101 Transporter, LysE family +2.8 Yes
L-Leucine Pf6N2E2_1382 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) +1.7 Yes
L-Leucine Pf6N2E2_1386 amino acid ABC transporter, periplasmic substrate-binding protein +1.5  
L-Leucine Pf6N2E2_1395 Uncharacterized conserved protein +1.4  
L-Leucine Pf6N2E2_1397 ABC transporter permease protein +1.4  
L-Leucine Pf6N2E2_2191 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) -4.3 Yes
L-Leucine Pf6N2E2_2192 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) -5.0 Yes
L-Leucine Pf6N2E2_2193 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) -5.0 Yes
L-Leucine Pf6N2E2_2194 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) -6.0 Yes
L-Leucine Pf6N2E2_2391 FIG137360: hypothetical protein -1.8 Yes
L-Leucine Pf6N2E2_2530 Sensory box/GGDEF family protein -1.2  
L-Leucine Pf6N2E2_2696 Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) -1.9 Yes
L-Leucine Pf6N2E2_2732 Transcriptional regulator, LysR family -1.7  
L-Leucine Pf6N2E2_2886 Phosphogluconate repressor HexR, RpiR family -2.1  
L-Leucine Pf6N2E2_2921 ABC transporter for L-leucine/L-phenylalanine/D-alanine, substrate-binding component LivK (from data) -2.0 Yes
L-Leucine Pf6N2E2_2923 ABC transporter for L-leucine/L-phenylalanine/D-alanine, permease component 1 LivH (from data) -2.2 Yes
L-Leucine Pf6N2E2_2924 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, permease component 2 LivM (from data) -2.2 Yes
L-Leucine Pf6N2E2_2926 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 2 LivF (from data) -2.0 Yes
L-Leucine Pf6N2E2_3576 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) -2.6 Yes
L-Leucine Pf6N2E2_3577 ABC transporter for L-leucine/L-isoleucine/D-alanine, ATPase component 1 LivG (from data) -1.9 Yes
L-Leucine Pf6N2E2_3578 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) -2.1 Yes
L-Leucine Pf6N2E2_3579 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) -2.3 Yes
L-Leucine Pf6N2E2_3580 Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1) -2.5 Yes
L-Leucine Pf6N2E2_4024 L-Proline/Glycine betaine transporter ProP -1.3 Yes
L-Leucine Pf6N2E2_4388 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) -1.4  
L-Leucine Pf6N2E2_478 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) -4.7 Yes
L-Leucine Pf6N2E2_480 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) (from data) -4.6 Yes
L-Leucine Pf6N2E2_481 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) -4.9 Yes
L-Leucine Pf6N2E2_5260 Phosphate acetyltransferase (EC 2.3.1.8) -1.4 Yes
L-Leucine Pf6N2E2_5274 FolM Alternative dihydrofolate reductase 1 -2.0 Yes
L-Leucine Pf6N2E2_634 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form -2.2 Yes
L-Leucine Pf6N2E2_682 Predicted regulator PutR for proline utilization, GntR family +1.5  
L-Leucine Pf6N2E2_771 Ribosyl nicotinamide transporter, PnuC-like -1.3  
L-Malic acid disodium salt monohydrate Pf6N2E2_3882 Signal transduction histidine kinase regulating C4-dicarboxylate transport system -1.5 Yes
L-Malic acid disodium salt monohydrate Pf6N2E2_3883 C4-dicarboxylate transport transcriptional regulatory protein -2.0 Yes
L-Malic acid disodium salt monohydrate Pf6N2E2_5707 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate -2.2 Yes
L-Phenylalanine Pf6N2E2_1394 FIG00953323: hypothetical protein -1.5  
L-Phenylalanine Pf6N2E2_1395 Uncharacterized conserved protein -1.3  
L-Phenylalanine Pf6N2E2_1397 ABC transporter permease protein -1.3  
L-Phenylalanine Pf6N2E2_2112 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) -1.6 Yes
L-Phenylalanine Pf6N2E2_2166 protein of unknown function DUF6, transmembrane -1.8  
L-Phenylalanine Pf6N2E2_2453 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) -1.0 Yes
L-Phenylalanine Pf6N2E2_2629 Phenylalanine hydroxylase transcriptional activator PhhR -4.8 Yes
L-Phenylalanine Pf6N2E2_2630 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) -5.5 Yes
L-Phenylalanine Pf6N2E2_2632 tyrosine aminotransferase (EC 2.6.1.57) (from data) -3.3 Yes
L-Phenylalanine Pf6N2E2_2837 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12) +1.1 Yes
L-Phenylalanine Pf6N2E2_2921 ABC transporter for L-leucine/L-phenylalanine/D-alanine, substrate-binding component LivK (from data) +1.0  
L-Phenylalanine Pf6N2E2_456 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) -4.4 Yes
L-Phenylalanine Pf6N2E2_4822 Anthranilate synthase, aminase component (EC 4.1.3.27) +1.6  
L-Phenylalanine Pf6N2E2_5290 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) -4.2 Yes
L-Phenylalanine Pf6N2E2_5292 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) -4.2 Yes
Putrescine Dihydrochloride Pf6N2E2_2847 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) +1.1  
Putrescine Dihydrochloride Pf6N2E2_4388 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) -1.7  
Putrescine Dihydrochloride Pf6N2E2_4390 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system -1.5 Yes
Putrescine Dihydrochloride Pf6N2E2_4509 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) -5.8 Yes
Putrescine Dihydrochloride Pf6N2E2_4510 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) -2.7 Yes
Putrescine Dihydrochloride Pf6N2E2_4512 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) -5.6 Yes
Putrescine Dihydrochloride Pf6N2E2_4513 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) -5.8 Yes
Putrescine Dihydrochloride Pf6N2E2_4514 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) -4.8 Yes
Putrescine Dihydrochloride Pf6N2E2_80 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) -2.0 Yes
Sodium D,L-Lactate Pf6N2E2_2389 Phosphoenolpyruvate synthase (EC 2.7.9.2) -1.5 Yes
Sodium D-Lactate Pf6N2E2_3385 Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing -4.2 Yes
Sodium D-Lactate Pf6N2E2_4165 Zinc ABC transporter, periplasmic-binding protein ZnuA -2.3 Yes
Sodium L-Lactate Pf6N2E2_4039 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) -1.3  
Sodium octanoate Pf6N2E2_2391 FIG137360: hypothetical protein -2.5 Yes
Sodium octanoate Pf6N2E2_2470 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) -1.6 Yes
Sodium octanoate Pf6N2E2_2877 Membrane fusion component of tripartite multidrug resistance system -2.6 Yes
Sodium octanoate Pf6N2E2_2878 required for 4-hydroxybenzoate and octanoate transport, together with MFP and FUSC proteins (Pf6N2E2_2877, Pf6N2E2_2879) (from data) -2.5 Yes
Sodium octanoate Pf6N2E2_2879 membrane protein, putative -3.1 Yes
Sodium octanoate Pf6N2E2_3103 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) -1.3 Yes
Sodium octanoate Pf6N2E2_3112 FIG00953322: hypothetical protein -1.6  
Sodium octanoate Pf6N2E2_3637 yqiA-like hydrolase, affects the cell envelope (from data) -2.2 Yes
Sodium octanoate Pf6N2E2_3642 lipoprotein, putative -1.8 Yes
Sodium octanoate Pf6N2E2_3891 Putative formate dehydrogenase oxidoreductase protein -1.1 Yes
Sodium octanoate Pf6N2E2_4087 L-asparaginase (EC 3.5.1.1) (from data) +1.6  
Sodium octanoate Pf6N2E2_4498 Outer membrane porin, OprD family -1.1  
Sodium octanoate Pf6N2E2_4766 Acyl-CoA dehydrogenase (EC 1.3.8.7) -3.2 Yes
Sodium octanoate Pf6N2E2_4769 Acyl-CoA dehydrogenase (EC 1.3.8.7) -4.8 Yes
Sodium octanoate Pf6N2E2_529 FIG00954439: hypothetical protein -1.6  
Sodium octanoate Pf6N2E2_5435 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) -2.0  
Sodium octanoate Pf6N2E2_5546 Queuosine Biosynthesis QueC ATPase -1.5  
Sodium octanoate Pf6N2E2_5586 Alkyl hydroperoxide reductase subunit C-like protein +1.1  
Sodium octanoate Pf6N2E2_5707 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate -1.0  
Sodium octanoate Pf6N2E2_5824 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) -1.4 Yes
Sodium octanoate Pf6N2E2_634 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form -3.8 Yes
Sodium propionate Pf6N2E2_1442 Transcriptional regulators of sugar metabolism +1.9  
Sodium propionate Pf6N2E2_1726 3-methylmercaptopropionyl-CoA ligase (DmdB) +1.1  
Sodium propionate Pf6N2E2_233 Transcriptional regulator, TetR family -1.3  
Sodium propionate Pf6N2E2_2533 Rhodanese domain protein UPF0176 -1.9 Yes
Sodium propionate Pf6N2E2_2642 putative patatin-like phospholipase +2.6  
Sodium propionate Pf6N2E2_2886 Phosphogluconate repressor HexR, RpiR family -1.6  
Sodium propionate Pf6N2E2_3103 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) -2.5 Yes
Sodium propionate Pf6N2E2_3268 Ribosome hibernation protein YhbH +1.4 Yes
Sodium propionate Pf6N2E2_3884 Histone acetyltransferase HPA2 and related acetyltransferases -3.3 Yes
Sodium propionate Pf6N2E2_4041 Acetyl-CoA hydrolase (EC 3.1.2.1) +2.2 Yes
Sodium propionate Pf6N2E2_4060 Rubredoxin-NAD(+) reductase (EC 1.18.1.1) -1.0  
Sodium propionate Pf6N2E2_424 Decarboxylase family protein -2.4 Yes
Sodium propionate Pf6N2E2_4799 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) -2.1 Yes
Sodium propionate Pf6N2E2_4800 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) -2.5 Yes
Sodium propionate Pf6N2E2_4801 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) -2.1 Yes
Sodium propionate Pf6N2E2_5093 ATP-dependent protease La (EC 3.4.21.53) Type II -1.4  
Sodium propionate Pf6N2E2_5279 Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C) -3.9 Yes
Sodium propionate Pf6N2E2_5304 ribosomal subunit interface protein, putative +1.5 Yes
Sodium propionate Pf6N2E2_5370 LysR family transcriptional regulator QseA +5.3 Yes
Sodium propionate Pf6N2E2_5538 4-hydroxybenzoyl-CoA thioesterase family active site -1.6  
Sodium propionate Pf6N2E2_5760 Sensory box histidine kinase/response regulator +2.5 Yes
Sodium propionate Pf6N2E2_5961 Transcriptional regulator, TetR family +2.5 Yes
Sodium propionate Pf6N2E2_6060 Propionate catabolism operon transcriptional regulator of GntR family [predicted] -5.1 Yes
Sodium propionate Pf6N2E2_6061 Methylisocitrate lyase (EC 4.1.3.30) (from data) -5.7 Yes
Sodium propionate Pf6N2E2_634 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form -2.0  
Sodium propionate Pf6N2E2_840 Alcohol dehydrogenase (EC 1.1.1.1) +1.1  
Sodium pyruvate Pf6N2E2_1295 Sensor histidine kinase -2.5 Yes
Sodium pyruvate Pf6N2E2_1296 DNA-binding response regulator, LuxR family -3.2 Yes
Sodium pyruvate Pf6N2E2_1442 Transcriptional regulators of sugar metabolism +1.1  
Sodium pyruvate Pf6N2E2_4165 Zinc ABC transporter, periplasmic-binding protein ZnuA -1.4 Yes
Sodium pyruvate Pf6N2E2_5849 large component of pyruvate transporter (actP-like) (from data) -1.1 Yes
Sodium succinate dibasic hexahydrate Pf6N2E2_1442 Transcriptional regulators of sugar metabolism +2.4  
Sodium succinate dibasic hexahydrate Pf6N2E2_3882 Signal transduction histidine kinase regulating C4-dicarboxylate transport system -2.6 Yes
Sodium succinate dibasic hexahydrate Pf6N2E2_3883 C4-dicarboxylate transport transcriptional regulatory protein -6.0 Yes
Sodium succinate dibasic hexahydrate Pf6N2E2_5707 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate -5.2 Yes
Sucrose Pf6N2E2_1645 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) -3.1 Yes
Sucrose Pf6N2E2_1646 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE -2.9 Yes
Sucrose Pf6N2E2_1647 Maltose/maltodextrin ABC transporter, permease protein MalF -2.7 Yes
Sucrose Pf6N2E2_1648 Maltose/maltodextrin ABC transporter, permease protein MalG -3.6  
Sucrose Pf6N2E2_1649 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) -3.8 Yes
Sucrose Pf6N2E2_1902 Oxidoreductase, aldo/keto reductase family -1.8  
Sucrose Pf6N2E2_2057 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes variable  
Sucrose Pf6N2E2_4078 Aldose 1-epimerase -1.1 Yes
Sucrose Pf6N2E2_4147 Fused spore maturation proteins A and B +2.2  
Sucrose Pf6N2E2_4332 hypothetical protein variable  
Sucrose Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) +2.2  
Sucrose Pf6N2E2_5391 Predicted ATPase related to phosphate starvation-inducible protein PhoH -1.6 Yes
Sucrose Pf6N2E2_5564 Membrane protein glpM -1.4  
Sucrose Pf6N2E2_5845 Nucleoside ABC transporter, periplasmic nucleoside-binding protein +1.5  
Sucrose Pf6N2E2_5846 Nucleoside ABC transporter, periplasmic nucleoside-binding protein +1.5  
Trisodium citrate dihydrate Pf6N2E2_2764 Tricarboxylate transport sensor protein TctE +1.7 Yes
Trisodium citrate dihydrate Pf6N2E2_2765 Tricarboxylate transport transcriptional regulator TctD +1.5 Yes
Trisodium citrate dihydrate Pf6N2E2_2768 Tricarboxylate transport protein TctC +1.6 Yes
Trisodium citrate dihydrate Pf6N2E2_2769 Tricarboxylate transport protein TctB +3.7 Yes
Trisodium citrate dihydrate Pf6N2E2_2770 Tricarboxylate transport membrane protein TctA +3.8 Yes
Trisodium citrate dihydrate Pf6N2E2_2833 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) -2.3  
Trisodium citrate dihydrate Pf6N2E2_2834 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) -2.2  
Trisodium citrate dihydrate Pf6N2E2_2837 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12) -1.6  
Trisodium citrate dihydrate Pf6N2E2_2838 4-hydroxybenzoate transporter -1.5  
Trisodium citrate dihydrate Pf6N2E2_2839 Pca regulon regulatory protein PcaR -2.0  
Trisodium citrate dihydrate Pf6N2E2_2853 Iron-regulated protein A precursor -2.6 Yes
Trisodium citrate dihydrate Pf6N2E2_2913 Transcriptional regulator PobR, AraC family -2.0  
Trisodium citrate dihydrate Pf6N2E2_2914 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) (from data) -2.1  
Trisodium citrate dihydrate Pf6N2E2_3073 N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17) +1.1 Yes
Trisodium citrate dihydrate Pf6N2E2_3160 Multicopper oxidase -2.9 Yes
Trisodium citrate dihydrate Pf6N2E2_3314 Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) +1.2  
Trisodium citrate dihydrate Pf6N2E2_3335 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB -1.1  
Trisodium citrate dihydrate Pf6N2E2_4138 Uncharacterized transporter, similarity to citrate transporter -3.2 Yes
Trisodium citrate dihydrate Pf6N2E2_4447 Cytochrome c family protein -3.0  
Trisodium citrate dihydrate Pf6N2E2_5305 Fe(3+) dicitrate transport protein FecA (from data) -2.2 Yes
Trisodium citrate dihydrate Pf6N2E2_5306 Iron siderophore sensor protein -1.0  
Trisodium citrate dihydrate Pf6N2E2_5307 FIG006045: Sigma factor, ECF subfamily -2.2 Yes
Trisodium citrate dihydrate Pf6N2E2_5616 outer membrane component of uptake system, probably for ferrous iron (from data) -3.2 Yes
Trisodium citrate dihydrate Pf6N2E2_5617 Iron-regulated protein A precursor -2.8  
Trisodium citrate dihydrate Pf6N2E2_5618 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites -3.0 Yes
Tween 20 Pf6N2E2_2335 Transcriptional regulator, GntR family -1.9  
Tween 20 Pf6N2E2_2696 Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) -1.6 Yes
Tween 20 Pf6N2E2_3241 Transcriptional regulator, LuxR family -3.2 Yes
Tween 20 Pf6N2E2_3242 FIG002188: hypothetical protein -3.5 Yes
Tween 20 Pf6N2E2_3243 FIG067310: hypothetical protein -3.4 Yes
Tween 20 Pf6N2E2_4766 Acyl-CoA dehydrogenase (EC 1.3.8.7) -2.6 Yes
Tween 20 Pf6N2E2_4769 Acyl-CoA dehydrogenase (EC 1.3.8.7) -1.6 Yes
Tween 20 Pf6N2E2_4989 LrgA-associated membrane protein LrgB -1.6 Yes
Tween 20 Pf6N2E2_5699 Transcriptional regulatory protein RstA -4.0 Yes
Tween 20 Pf6N2E2_5700 Sensor histidine kinase -3.8 Yes
Tween 20 Pf6N2E2_5754 Long-chain fatty acid transport protein -2.6 Yes
Tween 20 Pf6N2E2_5941 CTP:molybdopterin cytidylyltransferase +1.4  
Tween 20 Pf6N2E2_606 FIG005548: transport protein -3.3 Yes
Ying_AminoAcid20 Pf6N2E2_2585 Flagellar hook-length control protein FliK variable  
Ying_AminoAcid20 Pf6N2E2_3621 putative transporter, required for glycine utilization (from data) -2.2  
Ying_AminoAcid20 Pf6N2E2_3797 N-formylglutamate deformylase (EC 3.5.1.68) (from data) -1.0  
Ying_AminoAcid20 Pf6N2E2_456 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) -1.5  
Ying_AminoAcid20 Pf6N2E2_481 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) variable  
Ying_AminoAcid20 Pf6N2E2_4836 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) variable  
Ying_AminoAcid20 Pf6N2E2_5292 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) -2.1  
Ying_AminoAcid20 Pf6N2E2_6061 Methylisocitrate lyase (EC 4.1.3.30) (from data) -1.4  
Ying_Nucleobase14 Pf6N2E2_162 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) -1.9  
Ying_Nucleobase14 Pf6N2E2_164 Ribose operon repressor -2.1  
Ying_Nucleobase14 Pf6N2E2_2165 Uncharacterized conserved protein +1.1  
Ying_Nucleobase14 Pf6N2E2_2166 protein of unknown function DUF6, transmembrane +2.0  
Ying_Nucleobase14 Pf6N2E2_2167 hypothetical protein +1.2  
Ying_Nucleobase14 Pf6N2E2_2235 Xanthine permease -2.7  
Ying_Nucleobase14 Pf6N2E2_2336 Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) -2.0  
Ying_Nucleobase14 Pf6N2E2_2337 Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) -1.8  
Ying_Nucleobase14 Pf6N2E2_2338 XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) -2.3  
Ying_Nucleobase14 Pf6N2E2_3463 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) variable  
Ying_Nucleobase14 Pf6N2E2_3464 LysR family transcriptional regulator PA0133 variable  
Ying_Nucleobase14 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) -2.2  
Ying_Nucleobase14 Pf6N2E2_3816 Glycogen phosphorylase (EC 2.4.1.1) -1.4  
Ying_Nucleobase14 Pf6N2E2_3845 A/G-specific adenine glycosylase (EC 3.2.2.-) variable  
Ying_Nucleobase14 Pf6N2E2_4244 Glycosyltransferase -1.1  
Ying_Nucleobase14 Pf6N2E2_5235 Uracil phosphoribosyltransferase (EC 2.4.2.9) -1.4  
Ying_Nucleobase14 Pf6N2E2_5801 FIG137887: membrane protein related to purine degradation -1.3  
Ying_Nucleobase14 Pf6N2E2_5802 Ureidoglycolate hydrolase (EC 3.5.3.19) -2.2  
Ying_Nucleobase14 Pf6N2E2_5803 Allantoicase (EC 3.5.3.4) -2.8  
Ying_Nucleobase14 Pf6N2E2_5839 Glyoxylate carboligase (EC 4.1.1.47) -1.6  
Ying_Nucleobase14 Pf6N2E2_5979 D-galactonate regulator, IclR family -1.8  
Ying_OrganicAcid7 Pf6N2E2_3073 N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17) -1.1  
Ying_OrganicAcid7 Pf6N2E2_4098 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) -1.3  
Ying_OrganicAcid7 Pf6N2E2_4104 Probable transmembrane protein variable  
Ying_OrganicAcid7 Pf6N2E2_4106 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone -1.1  
Ying_OrganicAcid7 Pf6N2E2_4509 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) -2.3  
Ying_OrganicAcid7 Pf6N2E2_456 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) variable  
Ying_OrganicAcid7 Pf6N2E2_4799 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) -2.8 Yes
Ying_OrganicAcid7 Pf6N2E2_4800 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) -2.3  
Ying_OrganicAcid7 Pf6N2E2_4801 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) -2.4 Yes
Ying_OrganicAcid7 Pf6N2E2_4809 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases -1.8  
Ying_OrganicAcid7 Pf6N2E2_4822 Anthranilate synthase, aminase component (EC 4.1.3.27) -1.4  
Ying_OrganicAcid7 Pf6N2E2_5457 Membrane carboxypeptidase (penicillin-binding protein) -1.7  
Ying_OrganicAcid7 Pf6N2E2_5467 Response regulator variable  
Ying_OrganicAcid7 Pf6N2E2_5564 Membrane protein glpM -1.3  
Ying_OrganicAcid7 Pf6N2E2_5707 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate -1.6 Yes
Ying_OrganicAcid7 Pf6N2E2_5710 probable membrane protein YPO2362 -1.0  
Ying_Others16 Pf6N2E2_1394 FIG00953323: hypothetical protein -1.4  
Ying_Others16 Pf6N2E2_2979 Histone acetyltransferase HPA2 and related acetyltransferases variable  
Ying_Others16 Pf6N2E2_3172 Aliphatic amidase AmiE (EC 3.5.1.4) -1.0  
Ying_Others16 Pf6N2E2_3334 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) -1.3  
Ying_Others16 Pf6N2E2_3816 Glycogen phosphorylase (EC 2.4.1.1) -1.2  
Ying_Others16 Pf6N2E2_3855 Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) +1.3  
Ying_Others16 Pf6N2E2_3856 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) +1.8  
Ying_Others16 Pf6N2E2_3857 Arginine ABC transporter, permease protein ArtQ +1.1  
Ying_Others16 Pf6N2E2_3858 Amino acid ABC transporter, permease protein +1.3  
Ying_Others16 Pf6N2E2_4689 L-carnitine 3-dehydrogenase, B subunit (EC 1.1.1.108) (from data) -1.6  
Ying_Others16 Pf6N2E2_4690 L-carnitine 3-dehydrogenase, A subunit (EC 1.1.1.108) (from data) -1.4  
Ying_Others16 Pf6N2E2_4701 FIG00953113: hypothetical protein -2.1  
Ying_Others16 Pf6N2E2_4702 DgcA Dimethylglycine demethylase subunit A -1.6  
Ying_Others16 Pf6N2E2_4704 Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data) -2.0  
Ying_Others16 Pf6N2E2_4717 Serine hydroxymethyltransferase (EC 2.1.2.1) -2.2  
Ying_Others16 Pf6N2E2_4718 Sarcosine oxidase beta subunit (EC 1.5.3.1) -1.6  
Ying_Others16 Pf6N2E2_4719 Sarcosine oxidase delta subunit (EC 1.5.3.1) -2.1  
Ying_Others16 Pf6N2E2_4720 Sarcosine oxidase alpha subunit (EC 1.5.3.1) -2.2  
Ying_Others16 Pf6N2E2_5057 hypothetical protein +3.3  
Ying_Others16 Pf6N2E2_5059 Transcriptional regulator, TetR family +8.5  
Ying_Others16 Pf6N2E2_5660 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) +2.0  
Ying_Others16 Pf6N2E2_5662 L-Arginine ABC transporter, permease protein AotM (from data) +1.5  
Ying_all64 Pf6N2E2_4717 Serine hydroxymethyltransferase (EC 2.1.2.1) -1.0  
Ying_all64 Pf6N2E2_4718 Sarcosine oxidase beta subunit (EC 1.5.3.1) -1.1  
Ying_all64 Pf6N2E2_5059 Transcriptional regulator, TetR family +6.3  
Ying_sugar7 Pf6N2E2_1645 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) +7.2  
Ying_sugar7 Pf6N2E2_1646 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE +8.0  
Ying_sugar7 Pf6N2E2_1647 Maltose/maltodextrin ABC transporter, permease protein MalF +10.4  
Ying_sugar7 Pf6N2E2_1648 Maltose/maltodextrin ABC transporter, permease protein MalG +9.0  
Ying_sugar7 Pf6N2E2_1649 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) +6.0  
Ying_sugar7 Pf6N2E2_512 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) -1.0  
Ying_sugar7 Pf6N2E2_515 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) -1.5  
Ying_sugar7 Pf6N2E2_523 Inositol transport system ATP-binding protein -1.2  
Ying_sugar7 Pf6N2E2_806 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) -1.8  
a-Ketoglutaric acid disodium salt hydrate Pf6N2E2_5486 Alpha-ketoglutarate permease (from data) -4.6 Yes
a-Ketoglutaric acid disodium salt hydrate Pf6N2E2_5487 Nitrogen regulation protein NR(I) -5.8 Yes
a-Ketoglutaric acid disodium salt hydrate Pf6N2E2_5488 C4-dicarboxylate transport sensor protein -4.8 Yes
m-Inositol Pf6N2E2_1001 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) +1.4  
m-Inositol Pf6N2E2_1002 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) +1.9 Yes
m-Inositol Pf6N2E2_2044 Histidine kinase/response regulator hybrid protein variable  
m-Inositol Pf6N2E2_2470 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) variable  
m-Inositol Pf6N2E2_2696 Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) variable  
m-Inositol Pf6N2E2_3903 Ribosomal protein S6 glutaminyl transferase variable  
m-Inositol Pf6N2E2_4357 Nucleoside-diphosphate-sugar epimerases +1.2  
m-Inositol Pf6N2E2_4772 Coenzyme PQQ synthesis protein E +2.2  
m-Inositol Pf6N2E2_4774 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) +1.9  
m-Inositol Pf6N2E2_4775 Coenzyme PQQ synthesis protein B variable  
m-Inositol Pf6N2E2_4980 hypothetical protein +3.2  
m-Inositol Pf6N2E2_512 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) -4.0 Yes
m-Inositol Pf6N2E2_513 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) -3.3 Yes
m-Inositol Pf6N2E2_514 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) -3.6 Yes
m-Inositol Pf6N2E2_515 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) -2.8 Yes
m-Inositol Pf6N2E2_516 Inosose isomerase (EC 5.3.99.-) -3.6 Yes
m-Inositol Pf6N2E2_517 Epi-inositol hydrolase (EC 3.7.1.-) (from data) -3.2 Yes
m-Inositol Pf6N2E2_518 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) -3.1 Yes
m-Inositol Pf6N2E2_519 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) -2.4  
m-Inositol Pf6N2E2_523 Inositol transport system ATP-binding protein -3.8 Yes
m-Inositol Pf6N2E2_524 Inositol transport system permease protein -3.4 Yes
m-Inositol Pf6N2E2_5365 Heavy metal sensor histidine kinase variable  
m-Inositol Pf6N2E2_584 ABC transporter, periplasmic substrate-binding protein variable  
m-Inositol Pf6N2E2_5979 D-galactonate regulator, IclR family variable  
m-Inositol Pf6N2E2_694 Outer membrane protein (porin) variable