Specific Phenotypes for Pseudomonas fluorescens FW300-N2C3 in carbon source experiments

Condition Gene Description Fitness Cons.
Carnitine Hydrochloride AO356_00410 Fis family transcriptional regulator -1.8  
Carnitine Hydrochloride AO356_00425 acetoacetyl-CoA synthetase -2.6 Yes
Carnitine Hydrochloride AO356_05595 potassium transporter Kup -1.4 Yes
Carnitine Hydrochloride AO356_10860 NADP transhydrogenase subunit alpha -1.1  
Carnitine Hydrochloride AO356_10870 NAD synthetase -1.7 Yes
Carnitine Hydrochloride AO356_13800 transcriptional repressor BetI +1.2 Yes
Carnitine Hydrochloride AO356_13805 ABC transporter for Carnitine, ATPase component (from data) -3.5 Yes
Carnitine Hydrochloride AO356_13810 ABC transporter for Carnitine, permease component (from data) -5.0 Yes
Carnitine Hydrochloride AO356_13815 ABC transporter for Carnitine, periplasmic substrate-binding component 1 (from data) -4.2 Yes
Carnitine Hydrochloride AO356_13825 AraC family transcriptional regulator -4.0 Yes
Carnitine Hydrochloride AO356_13840 L-carnitine 3-dehydrogenase, thioesterase-like subunit CdhB (EC 1.1.1.108) (from data) -5.0 Yes
Carnitine Hydrochloride AO356_13845 Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) -4.1 Yes
Carnitine Hydrochloride AO356_13850 NADPH:quinone reductase -3.6 Yes
Carnitine Hydrochloride AO356_13855 glycine/betaine ABC transporter substrate-binding protein -4.3 Yes
Carnitine Hydrochloride AO356_13860 AraC family transcriptional regulator -3.6 Yes
Carnitine Hydrochloride AO356_13895 peptidase M19 -4.3 Yes
Carnitine Hydrochloride AO356_13900 hydrocarbon binding protein -4.5 Yes
Carnitine Hydrochloride AO356_13905 N-methylproline demethylase -4.8 Yes
Carnitine Hydrochloride AO356_13910 (Fe-S)-binding protein -3.6 Yes
Carnitine Hydrochloride AO356_13915 electron transfer flavoprotein subunit alpha -4.5 Yes
Carnitine Hydrochloride AO356_13945 Rieske (2Fe-2S) protein -5.4 Yes
Carnitine Hydrochloride AO356_13950 ferredoxin -5.2 Yes
Carnitine Hydrochloride AO356_13970 serine hydroxymethyltransferase -3.7 Yes
Carnitine Hydrochloride AO356_13975 sarcosine oxidase subunit beta -4.3 Yes
Carnitine Hydrochloride AO356_13980 sarcosine oxidase subunit delta -4.0 Yes
Carnitine Hydrochloride AO356_13985 sarcosine oxidase subunit alpha -4.1 Yes
Carnitine Hydrochloride AO356_13990 sarcosine oxidase subunit gamma -4.0  
Carnitine Hydrochloride AO356_16680 phosphate acetyltransferase -2.4 Yes
Carnitine Hydrochloride AO356_18415 XRE family transcriptional regulator -1.7  
Carnitine Hydrochloride AO356_21640 acetyl-CoA C-acetyltransferase [EC: 2.3.1.9] (from data) -4.4 Yes
Carnitine Hydrochloride AO356_21650 succinyl-CoA--3-ketoacid-CoA transferase -2.9 Yes
Carnitine Hydrochloride AO356_23120 histidine kinase -1.2  
Carnitine Hydrochloride AO356_23125 transcriptional regulator -1.8  
Carnitine Hydrochloride AO356_28055 quinonprotein alcohol dehydrogenase +1.0  
Cytidine AO356_00950 Ribokinase (EC 2.7.1.15) (from data) -3.1 Yes
Cytidine AO356_00960 ABC transporter permease -2.9 Yes
Cytidine AO356_00965 sugar ABC transporter ATP-binding protein -3.1 Yes
Cytidine AO356_00970 LacI family transcriptional regulator -2.5 Yes
Cytidine AO356_20300 transcriptional regulator -2.3  
Cytidine AO356_26025 glycogen synthase +1.4  
Cytidine AO356_28030 dehydrogenase -1.2 Yes
Cytidine AO356_28095 multidrug ABC transporter permease -1.1 Yes
D-Alanine AO356_00915 hypothetical protein +1.2  
D-Alanine AO356_03205 acetyltransferase -3.5  
D-Alanine AO356_04985 ATPase -1.4  
D-Alanine AO356_08650 GTPase HflX -1.3 Yes
D-Alanine AO356_08815 channel protein TolC -1.0  
D-Alanine AO356_12710 hypothetical protein +1.6  
D-Alanine AO356_17670 L-alanine and D-alanine permease (from data) -4.4 Yes
D-Alanine AO356_22995 ArsR family transcriptional regulator +1.5  
D-Alanine AO356_28015 histidine kinase +1.6  
D-Alanine AO356_28020 ethanol oxidation regulatory protein ercA (from data) +1.6  
D-Alanine AO356_28055 quinonprotein alcohol dehydrogenase +1.7  
D-Alanine AO356_28065 LuxR family transcriptional regulator +1.3  
D-Alanine AO356_28070 histidine kinase +1.7  
D-Alanine AO356_28105 LuxR family transcriptional regulator +1.8  
D-Fructose AO356_00035 Fructokinase (EC 2.7.1.4) (from data) -1.3 Yes
D-Fructose AO356_07325 fructose phosphotransferase system, IIB/IIC components (EC 2.7.1.202) (from data) -2.8 Yes
D-Fructose AO356_07330 1-phosphofructokinase (EC 2.7.1.56) (from data) -3.3 Yes
D-Fructose AO356_07335 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) -2.6 Yes
D-Fructose AO356_11355 hypothetical protein -1.2  
D-Fructose AO356_27695 Xylulose kinase (EC 2.7.1.17) (from data) +1.1 Yes
D-Galactose AO356_18415 XRE family transcriptional regulator -2.4  
D-Galactose AO356_20230 GntR family transcriptional regulator +3.1  
D-Galactose AO356_20235 L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) (from data) -2.7 Yes
D-Galactose AO356_20245 sugar ABC transporter substrate-binding protein -1.5 Yes
D-Galactose AO356_20250 L-arabinose transporter ATP-binding protein -1.4 Yes
D-Galactose AO356_20255 arabinose ABC transporter permease -1.3 Yes
D-Galactose AO356_20280 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data) -5.9 Yes
D-Galactose AO356_20290 galactonate dehydratase -4.8 Yes
D-Galactose AO356_20295 glucarate transporter -1.6 Yes
D-Gluconic Acid sodium salt AO356_22870 glycerate kinase +1.6  
D-Glucosamine Hydrochloride AO356_00450 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) -4.8 Yes
D-Glucosamine Hydrochloride AO356_00475 ABC transporter for D-Glucosamine, permease component 2 (from data) -4.8 Yes
D-Glucosamine Hydrochloride AO356_00480 ABC transporter for D-Glucosamine, periplasmic substrate-binding component (from data) -4.3 Yes
D-Glucosamine Hydrochloride AO356_01830 shikimate dehydrogenase +1.6 Yes
D-Glucosamine Hydrochloride AO356_05065 LacI family transcriptional regulator +4.4 Yes
D-Glucosamine Hydrochloride AO356_08470 N-acylglucosamine 2-epimerase -1.6  
D-Glucosamine Hydrochloride AO356_11820 sugar ABC transporter ATP-binding protein -1.6  
D-Glucosamine Hydrochloride AO356_11845 glycosyltransferase -1.9  
D-Glucosamine Hydrochloride AO356_11850 glycosyltransferase -2.0  
D-Glucosamine Hydrochloride AO356_14220 pyrroloquinoline quinone biosynthesis protein PqqF -1.9  
D-Glucosamine Hydrochloride AO356_20805 HAD family hydrolase -1.1 Yes
D-Glucosamine Hydrochloride AO356_24520 ArsR family transcriptional regulator +1.2  
D-Mannitol AO356_27665 AraC family transcriptional regulator -4.9 Yes
D-Mannitol AO356_27670 sugar ABC transporter substrate-binding protein -5.0 Yes
D-Mannitol AO356_27675 sugar ABC transporter permease -6.0 Yes
D-Mannitol AO356_27680 sugar ABC transporter permease -4.8 Yes
D-Mannitol AO356_27685 ABC transporter ATP-binding protein -5.1 Yes
D-Mannose AO356_00035 Fructokinase (EC 2.7.1.4) (from data) -4.1  
D-Mannose AO356_05200 D-mannose isomerase (EC 5.3.1.7) (from data) -2.4 Yes
D-Mannose AO356_28535 mannitol dehydrogenase -1.6  
D-Mannose AO356_28540 D-mannose transporter (from data) -2.0  
D-Mannose AO356_28550 bifunctional D-altronate/D-mannonate dehydratase -1.9  
D-Ribose AO356_00950 Ribokinase (EC 2.7.1.15) (from data) -5.2 Yes
D-Ribose AO356_00955 LacI family transcriptional regulator -2.6 Yes
D-Ribose AO356_00960 ABC transporter permease -3.8 Yes
D-Ribose AO356_00965 sugar ABC transporter ATP-binding protein -2.8 Yes
D-Ribose AO356_00970 LacI family transcriptional regulator -4.3 Yes
D-Ribose AO356_02170 tRNA-dihydrouridine synthase A +1.4  
D-Ribose AO356_11845 glycosyltransferase -2.4  
D-Ribose AO356_11850 glycosyltransferase -2.4  
D-Ribose AO356_20300 transcriptional regulator -4.1  
D-Sorbitol AO356_00010 ABC transporter for D-Sorbitol, ATPase component (from data) -3.7 Yes
D-Sorbitol AO356_00015 ABC transporter for D-Sorbitol, permease component 1 (from data) -3.6 Yes
D-Sorbitol AO356_00020 ABC transporter for D-Sorbitol, permease component 2 (from data) -4.5 Yes
D-Sorbitol AO356_00025 ABC transporter for D-Sorbitol, periplasmic substrate-binding component (from data) -4.0 Yes
D-Sorbitol AO356_00030 AraC family transcriptional regulator -3.9 Yes
D-Sorbitol AO356_00035 Fructokinase (EC 2.7.1.4) (from data) -5.1 Yes
D-Trehalose dihydrate AO356_03790 flagellar basal body protein FliL +1.6 Yes
D-Trehalose dihydrate AO356_03845 Fis family transcriptional regulator +1.2  
D-Trehalose dihydrate AO356_03850 histidine kinase +1.3  
D-Trehalose dihydrate AO356_05040 transcriptional regulator +1.3  
D-Trehalose dihydrate AO356_10160 ribosomal protein S6 modification protein -1.8  
D-Trehalose dihydrate AO356_11255 hypothetical protein -1.1  
D-Trehalose dihydrate AO356_11415 chemotaxis protein CheY -2.7  
D-Trehalose dihydrate AO356_11820 sugar ABC transporter ATP-binding protein -2.1 Yes
D-Trehalose dihydrate AO356_11845 glycosyltransferase -4.4 Yes
D-Trehalose dihydrate AO356_11850 glycosyltransferase -4.3 Yes
D-Trehalose dihydrate AO356_24190 GntR family transcriptional regulator +2.3  
D-Trehalose dihydrate AO356_24195 galactonate dehydratase +1.9  
D-Trehalose dihydrate AO356_24200 dehydrogenase +5.9  
D-Trehalose dihydrate AO356_24205 Alpha,alpha-trehalase (EC 3.2.1.28) (from data) -4.9 Yes
D-Trehalose dihydrate AO356_24210 diguanylate cyclase +1.0  
D-Trehalose dihydrate AO356_24905 4-hydroxy-tetrahydrodipicolinate synthase -1.6  
D-Trehalose dihydrate AO356_27620 circadian clock protein KaiC +1.8  
D-Trehalose dihydrate AO356_27625 histidine kinase +2.0  
D-Xylose AO356_01315 aldose epimerase -1.7 Yes
D-Xylose AO356_02170 tRNA-dihydrouridine synthase A +2.2 Yes
D-Xylose AO356_10770 MFS transporter -1.1  
D-Xylose AO356_27065 phosphoglucomutase +1.0  
D-Xylose AO356_27445 IclR family transcriptional regulator -1.4  
D-Xylose AO356_27665 AraC family transcriptional regulator -2.7 Yes
D-Xylose AO356_27695 Xylulose kinase (EC 2.7.1.17) (from data) -4.2 Yes
D-Xylose AO356_28495 AraC family transcriptional regulator -3.8 Yes
D-Xylose AO356_28500 Xylose isomerase (EC 5.3.1.5) (from data) -3.9 Yes
D-Xylose AO356_28760 Xylonate dehydratase (EC 4.2.1.82) (from data) -1.5 Yes
Ethanol AO356_03205 acetyltransferase -1.6  
Ethanol AO356_04245 peptidylprolyl isomerase -1.2  
Ethanol AO356_05235 glycerol-3-phosphate ABC transporter substrate-binding protein -1.4  
Ethanol AO356_09050 hypothetical protein -1.2  
Ethanol AO356_10160 ribosomal protein S6 modification protein +1.3  
Ethanol AO356_12785 chemotaxis protein CheY -1.4  
Ethanol AO356_13580 cytochrome B +1.0  
Ethanol AO356_13585 hypothetical protein +1.0  
Ethanol AO356_14210 pyrroloquinoline quinone biosynthesis protein PqqC -1.0  
Ethanol AO356_14215 pyrroloquinoline quinone biosynthesis protein PqqB -1.0  
Ethanol AO356_14220 pyrroloquinoline quinone biosynthesis protein PqqF -3.3 Yes
Ethanol AO356_18340 leucyl-tRNA synthetase +1.3  
Ethanol AO356_18695 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) -1.9 Yes
Ethanol AO356_22135 isocitrate dehydrogenase -1.3  
Ethanol AO356_25875 multidrug transporter -1.7  
Ethanol AO356_25880 acriflavine resistance protein B -1.6  
Ethanol AO356_25885 RND transporter -1.5  
Ethanol AO356_28020 ethanol oxidation regulatory protein ercA (from data) -4.4 Yes
Ethanol AO356_28030 dehydrogenase -1.2 Yes
Ethanol AO356_28045 amino acid ABC transporter substrate-binding protein -1.2 Yes
Ethanol AO356_28055 quinonprotein alcohol dehydrogenase -2.2 Yes
Ethanol AO356_28085 hypothetical protein -1.9 Yes
Ethanol AO356_28095 multidrug ABC transporter permease -1.8 Yes
Inosine AO356_00950 Ribokinase (EC 2.7.1.15) (from data) -3.7 Yes
Inosine AO356_00955 LacI family transcriptional regulator -2.6  
Inosine AO356_00960 ABC transporter permease -2.3 Yes
Inosine AO356_00970 LacI family transcriptional regulator -3.0 Yes
Inosine AO356_02170 tRNA-dihydrouridine synthase A +1.1  
Inosine AO356_02560 Xanthine dehydrogenase (EC 1.17.1.4) (from data) -1.5 Yes
Inosine AO356_02565 Xanthine dehydrogenase (EC 1.17.1.4) (from data) -1.1 Yes
Inosine AO356_07330 1-phosphofructokinase (EC 2.7.1.56) (from data) +1.3  
Inosine AO356_17975 histidine triad (HIT) protein -1.1  
Inosine AO356_19450 allantoicase -3.1 Yes
Inosine AO356_19455 OHCU decarboxylase -4.0 Yes
Inosine AO356_19460 allantoinase (EC 3.5.2.5) (from data) -3.7 Yes
Inosine AO356_19465 5-hydroxyisourate hydrolase [EC: 3.5.2.17] (from data) -3.9 Yes
Inosine AO356_19485 guanine permease -1.0 Yes
Inosine AO356_19615 hydroxypyruvate isomerase -4.3 Yes
Inosine AO356_19620 glyoxylate carboligase -2.4 Yes
L-Alanine AO356_17670 L-alanine and D-alanine permease (from data) -2.5 Yes
L-Arabinose AO356_20235 L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) (from data) -3.8 Yes
L-Arabinose AO356_20245 sugar ABC transporter substrate-binding protein -3.4 Yes
L-Arabinose AO356_20250 L-arabinose transporter ATP-binding protein -3.7 Yes
L-Arabinose AO356_20255 arabinose ABC transporter permease -3.9 Yes
L-Arabinose AO356_24585 L-arabonate dehydratase (EC 4.2.1.25) (from data) -5.4 Yes
L-Arabinose AO356_24590 MFS transporter -3.1 Yes
L-Arabinose AO356_24595 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) -4.7 Yes
L-Arginine AO356_08065 copper-transporting ATPase -1.7  
L-Arginine AO356_10030 Agmatine deiminase (EC 3.5.3.12) (from data) -1.9  
L-Arginine AO356_11490 zinc ABC transporter ATP-binding protein -1.2 Yes
L-Arginine AO356_11495 hypothetical protein -1.3  
L-Arginine AO356_18700 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) -4.0 Yes
L-Arginine AO356_18705 L-Arginine ABC transporter, permease component 2 (from data) -4.8 Yes
L-Arginine AO356_18710 L-Arginine ABC transporter, permease component 1 (from data) -5.6 Yes
L-Arginine AO356_23815 amidase -1.8  
L-Arginine AO356_24705 NAD-glutamate dehydrogenase -4.3 Yes
L-Arginine AO356_29375 ABC transporter permease +1.3  
L-Asparagine AO356_05085 ribonuclease BN -1.1  
L-Asparagine AO356_11095 sodium:alanine symporter -4.2 Yes
L-Asparagine AO356_11100 L-asparaginase (EC 3.5.1.1) (from data) -5.2 Yes
L-Asparagine AO356_17375 carboxylesterase -1.1  
L-Asparagine AO356_18225 amino acid ABC transporter permease -1.0 Yes
L-Asparagine AO356_20405 amidotransferase -1.4  
L-Aspartic Acid AO356_01900 aspartate racemase -2.4  
L-Aspartic Acid AO356_01905 L-aspartate transporter (from data) -1.4 Yes
L-Aspartic Acid AO356_01910 LysR family transcriptional regulator -1.5  
L-Glutamic acid monopotassium salt monohydrate AO356_02825 phosphoenolpyruvate synthase -1.7  
L-Glutamic acid monopotassium salt monohydrate AO356_12450 hypothetical protein -1.1  
L-Glutamine AO356_02825 phosphoenolpyruvate synthase -2.1 Yes
L-Glutamine AO356_11095 sodium:alanine symporter -2.6 Yes
L-Glutamine AO356_12450 hypothetical protein -2.1  
L-Glutamine AO356_17375 carboxylesterase -1.1  
L-Glutamine AO356_21690 Glutaminase (EC 3.5.1.2) (from data) -4.2 Yes
L-Histidine AO356_01105 putative hydrolase, required for lysine catabolism (from data) -1.5  
L-Histidine AO356_01110 hypothetical protein -1.2  
L-Histidine AO356_01565 MerR family transcriptional regulator -2.2  
L-Histidine AO356_01595 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) -1.7  
L-Histidine AO356_02980 molybdenum cofactor biosynthesis protein MoaA -3.5  
L-Histidine AO356_02985 molybdenum cofactor biosynthesis protein B -4.0  
L-Histidine AO356_02990 molybdenum cofactor guanylyltransferase -5.8  
L-Histidine AO356_03185 universal stress protein UspA -1.5  
L-Histidine AO356_03480 methylthioribose-1-phosphate isomerase -1.4  
L-Histidine AO356_04605 histidine kinase -1.6  
L-Histidine AO356_04955 beta-ketoadipyl CoA thiolase -2.4  
L-Histidine AO356_05065 LacI family transcriptional regulator -2.7  
L-Histidine AO356_05320 leucine ABC transporter substrate-binding protein +1.6  
L-Histidine AO356_05325 branched-chain amino acid transporter permease subunit LivH +1.4  
L-Histidine AO356_07340 transcriptional regulator -2.1  
L-Histidine AO356_08845 metal ABC transporter ATPase -1.2  
L-Histidine AO356_09125 GntR family transcriptional regulator -2.4  
L-Histidine AO356_09590 N-formylglutamate deformylase (EC 3.5.1.68) (from data) -4.3 Yes
L-Histidine AO356_09595 Imidazolonepropionase (EC 3.5.2.7) (from data) -4.8 Yes
L-Histidine AO356_09605 Histidine ammonia-lyase (EC 4.3.1.3) (from data) -2.8 Yes
L-Histidine AO356_09610 ABC transporter for L-Histidine, ATPase component (from data) -5.1 Yes
L-Histidine AO356_09615 ABC transporter for L-Histidine, permease component (from data) -6.6  
L-Histidine AO356_09620 ABC transporter for L-Histidine, periplasmic substrate-binding component (from data) -4.4 Yes
L-Histidine AO356_09625 sulfonate ABC transporter substrate-binding protein -4.3 Yes
L-Histidine AO356_09630 Urocanate hydratase (EC 4.2.1.49) (from data) -4.9 Yes
L-Histidine AO356_09635 histidine utilization regulatory protein hutD (from data) -4.7 Yes
L-Histidine AO356_09645 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) -4.5 Yes
L-Histidine AO356_10095 LysR family transcriptional regulator -1.7  
L-Histidine AO356_10100 formate dehydrogenase family accessory protein FdhD -4.2 Yes
L-Histidine AO356_10105 CbbBc protein -2.0 Yes
L-Histidine AO356_11155 hypothetical protein -1.6  
L-Histidine AO356_11275 16S rRNA methyltransferase -2.0  
L-Histidine AO356_12710 hypothetical protein -2.5  
L-Histidine AO356_13590 DEAD/DEAH box helicase +1.9  
L-Histidine AO356_14455 peroxiredoxin -1.2  
L-Histidine AO356_15380 hypothetical protein -2.8  
L-Histidine AO356_15440 histidine kinase +1.6  
L-Histidine AO356_15710 GntR family transcriptional regulator -3.7  
L-Histidine AO356_17355 hypothetical protein -1.1  
L-Histidine AO356_17375 carboxylesterase -4.1 Yes
L-Histidine AO356_18160 glycine cleavage system protein T +2.1  
L-Histidine AO356_19140 cobyrinic acid a,c-diamide synthase -1.8  
L-Histidine AO356_19150 cobalamin biosynthesis protein CobD -1.5  
L-Histidine AO356_20300 transcriptional regulator -1.2  
L-Histidine AO356_20580 hypothetical protein +2.5  
L-Histidine AO356_22945 peptidase M4 +1.8  
L-Histidine AO356_23240 hypothetical protein -4.1  
L-Histidine AO356_27445 IclR family transcriptional regulator -2.1  
L-Isoleucine AO356_07845 MFS transporter -1.6  
L-Isoleucine AO356_14165 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) +1.2  
L-Isoleucine AO356_15465 AsnC family transcriptional regulator -4.4 Yes
L-Isoleucine AO356_15525 hypothetical protein -1.0  
L-Isoleucine AO356_20345 GntR family transcriptional regulator -3.6 Yes
L-Isoleucine AO356_20865 2-methylisocitrate lyase -4.2 Yes
L-Isoleucine AO356_20870 2-methylcitrate synthase -3.8 Yes
L-Isoleucine AO356_22970 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) -5.7 Yes
L-Isoleucine AO356_22975 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) -6.2 Yes
L-Isoleucine AO356_22985 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) -5.0 Yes
L-Isoleucine AO356_22990 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) -5.9 Yes
L-Isoleucine AO356_22995 ArsR family transcriptional regulator -4.6 Yes
L-Isoleucine AO356_26315 AraC family transcriptional regulator -4.4 Yes
L-Isoleucine AO356_26340 AMP-binding protein -4.0 Yes
L-Leucine AO356_01580 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) -5.0 Yes
L-Leucine AO356_01585 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) -4.3 Yes
L-Leucine AO356_01590 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) -4.5 Yes
L-Leucine AO356_01595 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) -4.7 Yes
L-Leucine AO356_02830 transcriptional regulator -1.7 Yes
L-Leucine AO356_05320 leucine ABC transporter substrate-binding protein -2.2 Yes
L-Leucine AO356_05325 branched-chain amino acid transporter permease subunit LivH -2.0 Yes
L-Leucine AO356_05330 leucine/isoleucine/valine transporter permease subunit -2.0 Yes
L-Leucine AO356_05335 ABC transporter ATP-binding protein -3.0 Yes
L-Leucine AO356_05340 ABC transporter ATP-binding protein -2.6 Yes
L-Leucine AO356_08480 ABC transporter ATP-binding protein -1.5 Yes
L-Leucine AO356_08485 ABC transporter ATP-binding protein -1.6 Yes
L-Leucine AO356_08490 branched-chain amino acid ABC transporter permease -1.5 Yes
L-Leucine AO356_08495 branched-chain amino acid transporter permease subunit LivH -1.6 Yes
L-Leucine AO356_08500 amino acid ABC transporter substrate-binding protein -1.7 Yes
L-Leucine AO356_18415 XRE family transcriptional regulator -1.2  
L-Leucine AO356_20870 2-methylcitrate synthase -3.3 Yes
L-Leucine AO356_22970 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) -4.2 Yes
L-Leucine AO356_22975 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) -2.5 Yes
L-Leucine AO356_22990 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) -5.4 Yes
L-Leucine AO356_22995 ArsR family transcriptional regulator -4.7 Yes
L-Leucine AO356_24705 NAD-glutamate dehydrogenase -1.6 Yes
L-Leucine AO356_26135 AraC family transcriptional regulator +2.0 Yes
L-Leucine AO356_26140 lysine transporter LysE +1.9 Yes
L-Leucine AO356_28030 dehydrogenase +1.1 Yes
L-Leucine AO356_28055 quinonprotein alcohol dehydrogenase +1.8  
L-Leucine AO356_28065 LuxR family transcriptional regulator +1.6  
L-Leucine AO356_28070 histidine kinase +1.8  
L-Lysine AO356_01105 putative hydrolase, required for lysine catabolism (from data) -3.7 Yes
L-Lysine AO356_01565 MerR family transcriptional regulator +3.2  
L-Lysine AO356_01580 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) -1.2  
L-Lysine AO356_01585 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) -1.2  
L-Lysine AO356_04605 histidine kinase -1.7  
L-Lysine AO356_04995 LysR family transcriptional regulator -1.5  
L-Lysine AO356_05495 ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) -3.0 Yes
L-Lysine AO356_05500 ABC transporter for L-Lysine, permease component 1 (from data) -2.5 Yes
L-Lysine AO356_05505 ABC transporter for L-Lysine, permease component 2 (from data) -2.2 Yes
L-Lysine AO356_05515 ABC transporter for L-Lysine, ATPase component (from data) -2.4  
L-Lysine AO356_07240 peptide ABC transporter substrate-binding protein +2.2  
L-Lysine AO356_07245 peptide ABC transporter substrate-binding protein +1.3  
L-Lysine AO356_07250 porin +1.1  
L-Lysine AO356_07260 peptide ABC transporter permease +2.0  
L-Lysine AO356_07265 peptide transporter +2.3  
L-Lysine AO356_07270 peptide ABC transporter ATP-binding protein +2.1  
L-Lysine AO356_07275 peptide ABC transporter ATP-binding protein +2.0  
L-Lysine AO356_07840 hypothetical protein +2.1  
L-Lysine AO356_08490 branched-chain amino acid ABC transporter permease -1.5  
L-Lysine AO356_08505 FAD-dependent oxidoreductase -1.6 Yes
L-Lysine AO356_08510 aldehyde dehydrogenase -2.4 Yes
L-Lysine AO356_08515 LysR family transcriptional regulator -1.6  
L-Lysine AO356_09125 GntR family transcriptional regulator -2.2  
L-Lysine AO356_09865 histidine kinase +1.0  
L-Lysine AO356_09875 hypothetical protein +1.1  
L-Lysine AO356_09885 plasmid maintenance protein +1.2  
L-Lysine AO356_09890 hypothetical protein +1.6  
L-Lysine AO356_09900 ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) -1.8  
L-Lysine AO356_09905 ABC transporter for L-Lysine, permease component 1 (from data) -2.1 Yes
L-Lysine AO356_09910 ABC transporter for L-Lysine, permease component 2 (from data) -1.8  
L-Lysine AO356_10715 4-aminobutyrate aminotransferase -3.6  
L-Lysine AO356_10845 succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) (from data) -4.0 Yes
L-Lysine AO356_10850 acyl-CoA dehydrogenase -4.5 Yes
L-Lysine AO356_10855 LysR family transcriptional regulator -3.4 Yes
L-Lysine AO356_11100 L-asparaginase (EC 3.5.1.1) (from data) +1.2  
L-Lysine AO356_12045 homocysteine methyltransferase +2.5  
L-Lysine AO356_13140 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) +1.9  
L-Lysine AO356_13900 hydrocarbon binding protein -1.2  
L-Lysine AO356_13905 N-methylproline demethylase -2.6  
L-Lysine AO356_13910 (Fe-S)-binding protein -2.4  
L-Lysine AO356_13915 electron transfer flavoprotein subunit alpha -2.6  
L-Lysine AO356_14225 5-aminopentanamidase (EC 3.5.1.30) (from data) -3.5 Yes
L-Lysine AO356_14230 lysine 2-monooxygenase (EC 1.13.12.2) (from data) -5.0 Yes
L-Lysine AO356_14235 addiction module toxin RelE -1.9  
L-Lysine AO356_14240 transcriptional regulator -1.2  
L-Lysine AO356_14245 AsnC family transcriptional regulator -5.7 Yes
L-Lysine AO356_14375 histidine kinase +2.6  
L-Lysine AO356_14385 spermidine/putrescine ABC transporter ATP-binding protein -1.1  
L-Lysine AO356_14390 spermidine/putrescine ABC transporter substrate-binding protein -1.2  
L-Lysine AO356_15380 hypothetical protein -1.7  
L-Lysine AO356_16680 phosphate acetyltransferase -1.3  
L-Lysine AO356_17440 nucleoid-associated protein +1.0  
L-Lysine AO356_18700 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) +5.4  
L-Lysine AO356_18705 L-Arginine ABC transporter, permease component 2 (from data) +4.4 Yes
L-Lysine AO356_18710 L-Arginine ABC transporter, permease component 1 (from data) +4.4 Yes
L-Lysine AO356_18715 L-Arginine ABC transporter, ATPase component (from data) +4.3 Yes
L-Lysine AO356_21640 acetyl-CoA C-acetyltransferase [EC: 2.3.1.9] (from data) -4.3 Yes
L-Lysine AO356_22800 glutathione reductase -1.5  
L-Lysine AO356_22970 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) -2.5  
L-Lysine AO356_23815 amidase -1.6  
L-Lysine AO356_24705 NAD-glutamate dehydrogenase -1.5  
L-Malic acid disodium salt monohydrate AO356_10060 ATPase -1.2 Yes
L-Malic acid disodium salt monohydrate AO356_10065 Fis family transcriptional regulator -2.8 Yes
L-Malic acid disodium salt monohydrate AO356_17735 XRE family transcriptional regulator -1.1 Yes
L-Malic acid disodium salt monohydrate AO356_18980 sodium:C4-dicarboxylate symporter (dctA) (from data) -3.5 Yes
L-Proline AO356_01705 hypothetical protein -1.7  
L-Proline AO356_02825 phosphoenolpyruvate synthase -1.9 Yes
L-Proline AO356_08480 ABC transporter ATP-binding protein -1.8 Yes
L-Proline AO356_08490 branched-chain amino acid ABC transporter permease -1.5 Yes
L-Proline AO356_08495 branched-chain amino acid transporter permease subunit LivH -1.4 Yes
L-Proline AO356_08500 amino acid ABC transporter substrate-binding protein -1.5 Yes
L-Proline AO356_09010 proline:sodium symporter PutP -1.4 Yes
L-Proline AO356_11625 GABA permease -1.4 Yes
N-Acetyl-D-Glucosamine AO356_02825 phosphoenolpyruvate synthase -3.5 Yes
N-Acetyl-D-Glucosamine AO356_05235 glycerol-3-phosphate ABC transporter substrate-binding protein -1.3  
N-Acetyl-D-Glucosamine AO356_11060 aldose epimerase -2.1 Yes
N-Acetyl-D-Glucosamine AO356_11815 glycosyl transferase -1.2  
N-Acetyl-D-Glucosamine AO356_11820 sugar ABC transporter ATP-binding protein -2.6  
N-Acetyl-D-Glucosamine AO356_11825 ABC transporter -2.3  
N-Acetyl-D-Glucosamine AO356_11845 glycosyltransferase -4.1  
N-Acetyl-D-Glucosamine AO356_11850 glycosyltransferase -4.3  
N-Acetyl-D-Glucosamine AO356_12785 chemotaxis protein CheY -1.7  
N-Acetyl-D-Glucosamine AO356_14220 pyrroloquinoline quinone biosynthesis protein PqqF -1.3 Yes
N-Acetyl-D-Glucosamine AO356_17535 N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data) -5.5 Yes
N-Acetyl-D-Glucosamine AO356_17540 N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) (from data) -6.3 Yes
N-Acetyl-D-Glucosamine AO356_17550 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) -5.8 Yes
N-Acetyl-D-Glucosamine AO356_18200 hypothetical protein -1.2  
N-Acetyl-D-Glucosamine AO356_19395 aminopeptidase -1.1  
N-Acetyl-D-Glucosamine AO356_28055 quinonprotein alcohol dehydrogenase -2.2  
N-Acetyl-D-Glucosamine AO356_28065 LuxR family transcriptional regulator -2.2  
N-Acetyl-D-Glucosamine AO356_28070 histidine kinase -2.3  
Potassium acetate AO356_01505 isochorismatase +2.0  
Potassium acetate AO356_01520 porin +2.0  
Potassium acetate AO356_02815 ribonuclease activity regulator protein RraA -1.7 Yes
Potassium acetate AO356_04035 hypothetical protein +1.2  
Potassium acetate AO356_04810 phospholipase -1.6  
Potassium acetate AO356_06060 sodium:proton antiporter -1.0  
Potassium acetate AO356_10875 acetyl-CoA hydrolase -2.6 Yes
Potassium acetate AO356_11145 carbonate dehydratase -4.2 Yes
Potassium acetate AO356_11160 cytochrome B559 subunit alpha -1.2  
Potassium acetate AO356_11360 hypothetical protein -1.1  
Potassium acetate AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -2.9 Yes
Potassium acetate AO356_16545 FAD-dependent oxidoreductase -1.5  
Potassium acetate AO356_17225 LysR family transcriptional regulator -2.1 Yes
Potassium acetate AO356_17230 RND transporter -1.9 Yes
Potassium acetate AO356_17235 fusaric acid resistance protein -1.8 Yes
Potassium acetate AO356_17240 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO356_17230, AO356_17245, and AO356_17235) (from data) -1.7 Yes
Potassium acetate AO356_17245 hypothetical protein -1.8 Yes
Potassium acetate AO356_18690 hypothetical protein -1.0  
Potassium acetate AO356_18695 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) -4.5 Yes
Potassium acetate AO356_19225 histidine kinase -5.0 Yes
Potassium acetate AO356_19550 acireductone dioxygenase -1.2  
Potassium acetate AO356_20285 2-dehydro-3-deoxy-6-phosphogalactonate aldolase +1.4  
Potassium acetate AO356_22970 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) -2.0  
Potassium acetate AO356_24540 serine/threonine protein phosphatase -2.3 Yes
Putrescine Dihydrochloride AO356_13135 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) -6.0 Yes
Putrescine Dihydrochloride AO356_13140 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) -2.0 Yes
Putrescine Dihydrochloride AO356_13150 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) -4.4 Yes
Putrescine Dihydrochloride AO356_13160 putrescine ABC transporter, substrate-binding component (from data) -2.5 Yes
Putrescine Dihydrochloride AO356_16535 MerR family transcriptional regulator +1.2  
Putrescine Dihydrochloride AO356_17200 histidine kinase +1.7  
Putrescine Dihydrochloride AO356_21495 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) -3.8 Yes
Putrescine Dihydrochloride AO356_28015 histidine kinase +3.5  
Putrescine Dihydrochloride AO356_28020 ethanol oxidation regulatory protein ercA (from data) +3.7 Yes
Putrescine Dihydrochloride AO356_28055 quinonprotein alcohol dehydrogenase +3.6  
Putrescine Dihydrochloride AO356_28065 LuxR family transcriptional regulator +3.3  
Putrescine Dihydrochloride AO356_28070 histidine kinase +3.5  
Putrescine Dihydrochloride AO356_28105 LuxR family transcriptional regulator +3.6  
Sodium D,L-Lactate AO356_07550 L-lactate and D-lactate permease (lctP family) (from data) -3.8 Yes
Sodium D,L-Lactate AO356_07555 oxidoreductase -3.5 Yes
Sodium D,L-Lactate AO356_07560 (Fe-S)-binding protein -3.9 Yes
Sodium D,L-Lactate AO356_07565 lactate utilization protein B/C -4.6 Yes
Sodium D,L-Lactate AO356_07570 4Fe-4S ferredoxin -1.3 Yes
Sodium D-Lactate AO356_02830 transcriptional regulator -1.4  
Sodium D-Lactate AO356_03535 BolA family transcriptional regulator -4.2 Yes
Sodium D-Lactate AO356_07550 L-lactate and D-lactate permease (lctP family) (from data) -4.8 Yes
Sodium D-Lactate AO356_07555 oxidoreductase -3.9 Yes
Sodium D-Lactate AO356_07560 (Fe-S)-binding protein -4.6 Yes
Sodium D-Lactate AO356_07565 lactate utilization protein B/C -4.9 Yes
Sodium D-Lactate AO356_07570 4Fe-4S ferredoxin -4.6 Yes
Sodium D-Lactate AO356_11480 ABC transporter substrate-binding protein -3.7 Yes
Sodium D-Lactate AO356_11490 zinc ABC transporter ATP-binding protein -2.8 Yes
Sodium D-Lactate AO356_11495 hypothetical protein -3.9  
Sodium D-Lactate AO356_12745 iron donor protein CyaY -3.6  
Sodium D-Lactate AO356_12785 chemotaxis protein CheY -1.4  
Sodium D-Lactate AO356_14085 DNA polymerase III subunit epsilon +1.6  
Sodium D-Lactate AO356_15265 murein hydrolase transporter LrgA -4.6 Yes
Sodium D-Lactate AO356_15270 hypothetical protein -4.2 Yes
Sodium D-Lactate AO356_19225 histidine kinase -1.4  
Sodium D-Lactate AO356_19660 hypothetical protein +1.1 Yes
Sodium D-Lactate AO356_19665 cation/acetate symporter ActP +1.1 Yes
Sodium Fumarate dibasic AO356_03565 polyphosphate kinase +1.1  
Sodium Fumarate dibasic AO356_10060 ATPase -1.2 Yes
Sodium Fumarate dibasic AO356_10065 Fis family transcriptional regulator -3.8 Yes
Sodium Fumarate dibasic AO356_12705 ammonia channel protein +1.1  
Sodium Fumarate dibasic AO356_18980 sodium:C4-dicarboxylate symporter (dctA) (from data) -4.4 Yes
Sodium Fumarate dibasic AO356_20580 hypothetical protein +2.6  
Sodium Fumarate dibasic AO356_23240 hypothetical protein -1.7  
Sodium L-Lactate AO356_03535 BolA family transcriptional regulator -1.9 Yes
Sodium L-Lactate AO356_07550 L-lactate and D-lactate permease (lctP family) (from data) -3.4 Yes
Sodium L-Lactate AO356_07555 oxidoreductase -3.4 Yes
Sodium L-Lactate AO356_07560 (Fe-S)-binding protein -4.7 Yes
Sodium L-Lactate AO356_07565 lactate utilization protein B/C -5.1 Yes
Sodium L-Lactate AO356_10860 NADP transhydrogenase subunit alpha -1.1 Yes
Sodium L-Lactate AO356_15265 murein hydrolase transporter LrgA -1.6  
Sodium pyruvate AO356_25670 regulator -1.4 Yes
Sodium succinate dibasic hexahydrate AO356_10065 Fis family transcriptional regulator -4.7 Yes
Sodium succinate dibasic hexahydrate AO356_18980 sodium:C4-dicarboxylate symporter (dctA) (from data) -5.0 Yes
Sucrose AO356_17330 ATPase -1.5 Yes
Sucrose AO356_18080 LysR family transcriptional regulator -1.1  
Sucrose AO356_28565 porin -4.6 Yes
Sucrose AO356_28570 ABC transporter substrate-binding protein -4.5 Yes
Sucrose AO356_28575 ABC transporter permease -4.9 Yes
Sucrose AO356_28585 ABC transporter -4.8 Yes
Sucrose AO356_28590 sucrose alpha-glucosidase (EC 3.2.1.48) (from data) -4.8 Yes
Tween 20 AO356_10860 NADP transhydrogenase subunit alpha -1.0 Yes
Tween 20 AO356_10870 NAD synthetase -1.1  
Tween 20 AO356_11845 glycosyltransferase -1.6  
Tween 20 AO356_11850 glycosyltransferase -1.7  
Tween 20 AO356_14165 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) -3.8 Yes
Tween 20 AO356_14190 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) -3.5 Yes
Tween 20 AO356_15265 murein hydrolase transporter LrgA -4.4 Yes
Tween 20 AO356_15270 hypothetical protein -5.6 Yes
Uridine AO356_00940 uridine/adenosine nucleosidase (EC 3.2.2.3; EC 3.2.2.7) (from data) -1.1 Yes
Uridine AO356_00960 ABC transporter permease -3.1 Yes
Uridine AO356_00965 sugar ABC transporter ATP-binding protein -2.5 Yes
Uridine AO356_00970 LacI family transcriptional regulator -2.9  
Uridine AO356_02170 tRNA-dihydrouridine synthase A +1.1  
Uridine AO356_14220 pyrroloquinoline quinone biosynthesis protein PqqF -1.2  
Uridine AO356_20300 transcriptional regulator -1.9  
Uridine AO356_27065 phosphoglucomutase +1.0  
a-Ketoglutaric acid disodium salt hydrate AO356_17790 alpha-ketoglutarate permease (MHS family) (from data) -3.6 Yes
a-Ketoglutaric acid disodium salt hydrate AO356_17795 hypothetical protein -1.1  
a-Ketoglutaric acid disodium salt hydrate AO356_17800 C4-dicarboxylate ABC transporter -3.4 Yes
a-Ketoglutaric acid disodium salt hydrate AO356_17805 cytochrome C biogenesis protein CcmE -3.0 Yes
m-Inositol AO356_23160 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) -6.1 Yes
m-Inositol AO356_23165 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) -5.8 Yes
m-Inositol AO356_23170 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) -5.9 Yes
m-Inositol AO356_23175 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) -5.0 Yes
m-Inositol AO356_23185 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) -4.8 Yes
m-Inositol AO356_23190 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) -5.9 Yes
m-Inositol AO356_23200 rhizopine-binding protein -6.3 Yes
m-Inositol AO356_23205 D-ribose transporter ATP-binding protein -5.4 Yes
m-Inositol AO356_23210 ABC transporter -4.5 Yes