| Condition | Gene | Description | Fitness | Cons. |
|---|
| Carnitine Hydrochloride | AO353_01210 | GntR family transcriptional regulator | -2.0 | |
| Carnitine Hydrochloride | AO353_03235 | glutamate-pyruvate aminotransferase | -1.4 | |
| Carnitine Hydrochloride | AO353_05065 | phosphate acetyltransferase | -1.7 | Yes |
| Carnitine Hydrochloride | AO353_07335 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.1 | |
| Carnitine Hydrochloride | AO353_07340 | yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.4 | |
| Carnitine Hydrochloride | AO353_07345 | ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.3 | |
| Carnitine Hydrochloride | AO353_07650 | sarcosine oxidase subunit alpha | -3.6 | Yes |
| Carnitine Hydrochloride | AO353_07655 | sarcosine oxidase subunit delta | -4.1 | Yes |
| Carnitine Hydrochloride | AO353_07660 | sarcosine oxidase (5,10-methylenetetrahydrofolate-forming), beta subunit (EC 1.5.3.24) (from data) | -3.6 | Yes |
| Carnitine Hydrochloride | AO353_07665 | Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) | -3.1 | Yes |
| Carnitine Hydrochloride | AO353_07675 | ferredoxin | -3.6 | Yes |
| Carnitine Hydrochloride | AO353_07680 | Rieske (2Fe-2S) protein | -4.2 | Yes |
| Carnitine Hydrochloride | AO353_07700 | electron transfer flavoprotein subunit alpha | -4.5 | Yes |
| Carnitine Hydrochloride | AO353_07705 | DgcB Dimethylglycine demethylase subunit B (EC 1.5.3.-) (from data) | -3.8 | Yes |
| Carnitine Hydrochloride | AO353_07710 | DgcA Dimethylglycine demethylase subunit A (from data) | -3.8 | Yes |
| Carnitine Hydrochloride | AO353_07715 | hydrocarbon binding protein | -3.6 | Yes |
| Carnitine Hydrochloride | AO353_07720 | peptidase M19 | -3.6 | Yes |
| Carnitine Hydrochloride | AO353_07735 | AraC family transcriptional regulator | -3.4 | Yes |
| Carnitine Hydrochloride | AO353_07740 | ABC transporter for Carnitine, substrate-binding component (from data) | -3.1 | Yes |
| Carnitine Hydrochloride | AO353_07745 | NADPH:quinone reductase | -4.4 | Yes |
| Carnitine Hydrochloride | AO353_07750 | carnitine 3-dehydrogenase [EC:1.1.1.108] (from data) | -4.2 | Yes |
| Carnitine Hydrochloride | AO353_07755 | betainyl-CoA thiolase (EC 3.1.2.-) (from data) | -3.0 | Yes |
| Carnitine Hydrochloride | AO353_07770 | AraC family transcriptional regulator | -3.2 | Yes |
| Carnitine Hydrochloride | AO353_07780 | Carnitine ABC transporter, substrate-binding component CaiX (from data) | -3.0 | Yes |
| Carnitine Hydrochloride | AO353_07785 | ABC transporter for Carnitine, permease component (from data) | -3.8 | Yes |
| Carnitine Hydrochloride | AO353_07790 | ABC transporter for Carnitine, ATPase component (from data) | -2.9 | Yes |
| Carnitine Hydrochloride | AO353_11080 | NAD synthetase | -1.4 | Yes |
| Carnitine Hydrochloride | AO353_16310 | phosphoenolpyruvate carboxylase | -1.4 | |
| Carnitine Hydrochloride | AO353_16880 | potassium transporter Kup | -2.3 | Yes |
| Carnitine Hydrochloride | AO353_27930 | LysR family transcriptional regulator | -2.5 | |
| Carnitine Hydrochloride | AO353_27935 | succinyl-CoA--3-ketoacid-CoA transferase | -2.5 | Yes |
| Carnitine Hydrochloride | AO353_27940 | succinyl-CoA--3-ketoacid-CoA transferase | -2.1 | Yes |
| Cytidine | AO353_00300 | DNA helicase | +1.6 | |
| Cytidine | AO353_00305 | ATP-binding protein | +1.3 | |
| Cytidine | AO353_03405 | histidine kinase | +1.9 | |
| Cytidine | AO353_03770 | hypothetical protein | +1.5 | |
| Cytidine | AO353_22355 | multidrug ABC transporter permease | -1.4 | Yes |
| Cytidine | AO353_22370 | branched-chain amino acid ABC transporter substrate-binding protein | -2.6 | |
| Cytidine | AO353_22380 | amino acid ABC transporter substrate-binding protein | -1.5 | |
| Cytidine | AO353_22385 | dehydrogenase | -1.3 | Yes |
| D-Alanine | AO353_09160 | AsnC family transcriptional regulator | -3.4 | Yes |
| D-Alanine | AO353_16120 | D-alanine and L-alanine transporter (from data) | -2.4 | Yes |
| D-Fructose | AO353_05475 | PTS fructose transporter subunit IIBC | -3.6 | Yes |
| D-Fructose | AO353_05485 | Fructose-specific PTS system, I, HPr, and IIA components (from data) | -4.2 | Yes |
| D-Fructose | AO353_12195 | hypothetical protein | +1.3 | |
| D-Fructose | AO353_12200 | hypothetical protein | +2.5 | |
| D-Fructose | AO353_24665 | phosphoglucomutase | +2.1 | |
| D-Fructose | AO353_25900 | mannitol dehydrogenase | +1.9 | Yes |
| D-Gluconic Acid sodium salt | AO353_26885 | phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) | -2.6 | Yes |
| D-Glucosamine Hydrochloride | AO353_03255 | LacI family transcriptional regulator | +3.3 | Yes |
| D-Glucosamine Hydrochloride | AO353_03380 | sugar ABC transporter ATP-binding protein | +3.9 | Yes |
| D-Glucosamine Hydrochloride | AO353_03385 | sugar ABC transporter permease | +3.7 | Yes |
| D-Glucosamine Hydrochloride | AO353_03390 | sugar ABC transporter permease | +3.8 | Yes |
| D-Glucosamine Hydrochloride | AO353_03395 | sugar ABC transporter substrate-binding protein | +4.2 | Yes |
| D-Glucosamine Hydrochloride | AO353_04445 | GntR family transcriptional regulator | +6.6 | Yes |
| D-Glucosamine Hydrochloride | AO353_04450 | N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) | +3.9 | Yes |
| D-Glucosamine Hydrochloride | AO353_04455 | Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) | -3.7 | Yes |
| D-Glucosamine Hydrochloride | AO353_16050 | porin | +1.5 | |
| D-Glucosamine Hydrochloride | AO353_21710 | ABC transporter for D-glucosamine, periplasmic substrate-binding component (from data) | -2.1 | Yes |
| D-Glucosamine Hydrochloride | AO353_21715 | ABC transporter for D-glucosamine, permease component 1 (from data) | -2.2 | Yes |
| D-Glucosamine Hydrochloride | AO353_21720 | ABC transporter for D-glucosamine, permease component 2 (from data) | -1.7 | Yes |
| D-Glucosamine Hydrochloride | AO353_21740 | D-glucosaminate dehydratase (EC 4.3.1.9) (from data) | -2.4 | Yes |
| D-Glucose | AO353_02755 | peroxiredoxin | -1.1 | |
| D-Glucose | AO353_03635 | mechanosensitive ion channel protein MscS | +1.3 | |
| D-Glucose | AO353_11930 | ketosteroid isomerase | -1.1 | |
| D-Glucose | AO353_14460 | competence protein TfoX | +1.3 | |
| D-Glucose | AO353_17665 | glycine cleavage system protein R | +1.2 | |
| D-Glucose | AO353_21620 | peptidylprolyl isomerase | +2.1 | |
| D-Mannose | AO353_03380 | sugar ABC transporter ATP-binding protein | -2.5 | Yes |
| D-Mannose | AO353_03385 | sugar ABC transporter permease | -1.9 | Yes |
| D-Mannose | AO353_03390 | sugar ABC transporter permease | -2.3 | Yes |
| D-Mannose | AO353_03395 | sugar ABC transporter substrate-binding protein | -2.8 | Yes |
| D-Mannose | AO353_03400 | D-mannose isomerase (EC 5.3.1.7) (from data) | -5.0 | Yes |
| D-Mannose | AO353_05475 | PTS fructose transporter subunit IIBC | -4.2 | Yes |
| D-Mannose | AO353_05485 | Fructose-specific PTS system, I, HPr, and IIA components (from data) | -4.4 | Yes |
| D-Mannose | AO353_22680 | aldehyde dehydrogenase | -1.0 | Yes |
| D-Mannose | AO353_23885 | AraC family transcriptional regulator | -5.4 | Yes |
| D-Mannose | AO353_25880 | sugar ABC transporter substrate-binding protein | -3.1 | Yes |
| D-Mannose | AO353_25885 | sugar ABC transporter permease | -2.2 | Yes |
| D-Mannose | AO353_25890 | sugar ABC transporter permease | -2.2 | Yes |
| D-Mannose | AO353_25895 | ABC transporter ATP-binding protein | -3.6 | Yes |
| D-Mannose | AO353_25900 | mannitol dehydrogenase | -2.4 | Yes |
| D-Mannose | AO353_25910 | Fructokinase (EC 2.7.1.4) (from data) | -4.6 | Yes |
| D-Ribose | AO353_00300 | DNA helicase | +2.2 | |
| D-Ribose | AO353_00305 | ATP-binding protein | +1.9 | |
| D-Ribose | AO353_05490 | transcriptional regulator | -1.5 | Yes |
| D-Ribose | AO353_06550 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | -1.5 | |
| D-Ribose | AO353_12305 | D-tyrosyl-tRNA(Tyr) deacylase | +1.0 | |
| D-Ribose | AO353_20820 | sugar ABC transporter ATP-binding protein | -3.2 | Yes |
| D-Ribose | AO353_20825 | ABC transporter permease | -3.1 | Yes |
| D-Ribose | AO353_20830 | LacI family transcriptional regulator | -1.9 | Yes |
| D-Ribose | AO353_20835 | Ribokinase (EC 2.7.1.15) (from data) | -3.1 | Yes |
| D-Ribose | AO353_23805 | aldo/keto reductase | +1.1 | |
| D-Ribose | AO353_24665 | phosphoglucomutase | +1.5 | |
| D-Serine | AO353_25205 | permease DsdX | -2.7 | Yes |
| D-Serine | AO353_25210 | D-serine ammonia-lyase (EC 4.3.1.18) (from data) | -3.7 | Yes |
| D-Serine | AO353_25215 | transcriptional regulator | -4.0 | Yes |
| D-Trehalose dihydrate | AO353_03235 | glutamate-pyruvate aminotransferase | -1.7 | |
| D-Trehalose dihydrate | AO353_15975 | GntR family transcriptional regulator | +1.7 | |
| D-Trehalose dihydrate | AO353_15980 | trehalose PTS system, EII-BC components TreB (from data) | -4.1 | Yes |
| D-Trehalose dihydrate | AO353_15990 | maltoporin | -3.2 | Yes |
| D-Trehalose dihydrate | AO353_15995 | trehalose-specific PTS system, I, HPr, and IIA components (from data) | -3.4 | Yes |
| Ethanol | AO353_07430 | pyrroloquinoline quinone biosynthesis protein PqqF | -1.2 | Yes |
| Ethanol | AO353_13690 | thiol:disulfide interchange protein | -1.3 | |
| Ethanol | AO353_18220 | isocitrate dehydrogenase | -1.5 | |
| Ethanol | AO353_22355 | multidrug ABC transporter permease | -2.6 | Yes |
| Ethanol | AO353_22365 | hypothetical protein | -2.3 | Yes |
| Ethanol | AO353_22380 | amino acid ABC transporter substrate-binding protein | -1.9 | Yes |
| Ethanol | AO353_22385 | dehydrogenase | -2.6 | Yes |
| Glycerol | AO353_03235 | glutamate-pyruvate aminotransferase | -1.5 | |
| Glycerol | AO353_05700 | L-lactate permease | -2.2 | Yes |
| Glycerol | AO353_05705 | oxidoreductase | -2.5 | Yes |
| Glycerol | AO353_05710 | (Fe-S)-binding protein | -2.1 | Yes |
| Glycerol | AO353_05715 | lactate utilization protein B/C | -2.6 | |
| Glycerol | AO353_05720 | 4Fe-4S ferredoxin | -2.3 | Yes |
| Glycerol | AO353_06515 | hypothetical protein | -2.4 | Yes |
| Glycerol | AO353_06520 | murein hydrolase transporter LrgA | -1.8 | Yes |
| L-Alanine | AO353_09160 | AsnC family transcriptional regulator | -3.4 | Yes |
| L-Alanine | AO353_16120 | D-alanine and L-alanine transporter (from data) | -1.5 | Yes |
| L-Arginine | AO353_03040 | ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) | -3.2 | Yes |
| L-Arginine | AO353_03045 | ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) | -2.6 | Yes |
| L-Arginine | AO353_08595 | Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) | -3.1 | Yes |
| L-Arginine | AO353_10905 | zinc ABC transporter ATP-binding protein | -1.4 | Yes |
| L-Arginine | AO353_11505 | succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) | -1.4 | |
| L-Asparagine | AO353_00630 | (Fe-S)-binding protein | -1.5 | |
| L-Asparagine | AO353_09955 | sodium:alanine symporter | -3.2 | Yes |
| L-Asparagine | AO353_09960 | L-asparaginase (EC 3.5.1.1) (from data) | -4.0 | Yes |
| L-Asparagine | AO353_16270 | histidine kinase | -1.6 | Yes |
| L-Asparagine | AO353_16285 | ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) | -1.8 | Yes |
| L-Asparagine | AO353_16290 | ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) | -1.9 | Yes |
| L-Aspartic Acid | AO353_16270 | histidine kinase | -2.4 | |
| L-Aspartic Acid | AO353_16285 | ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) | -2.3 | Yes |
| L-Aspartic Acid | AO353_16290 | ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) | -2.8 | |
| L-Aspartic Acid | AO353_26530 | hypothetical protein | -2.5 | |
| L-Citrulline | AO353_02265 | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | +1.2 | |
| L-Citrulline | AO353_03085 | phospholipase | variable | |
| L-Citrulline | AO353_03635 | mechanosensitive ion channel protein MscS | variable | |
| L-Citrulline | AO353_04075 | electron transporter RnfG | -1.5 | |
| L-Citrulline | AO353_04135 | bacterioferritin | variable | |
| L-Citrulline | AO353_04955 | dihydrofolate reductase | -1.8 | |
| L-Citrulline | AO353_08080 | chemotaxis protein | -1.8 | |
| L-Citrulline | AO353_08595 | Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) | variable | |
| L-Citrulline | AO353_10260 | sugar ABC transporter ATP-binding protein | variable | |
| L-Citrulline | AO353_11225 | disulfide bond formation protein DsbA | variable | |
| L-Citrulline | AO353_11505 | succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) | variable | |
| L-Citrulline | AO353_14460 | competence protein TfoX | variable | |
| L-Citrulline | AO353_16310 | phosphoenolpyruvate carboxylase | variable | |
| L-Citrulline | AO353_17665 | glycine cleavage system protein R | +1.5 | |
| L-Citrulline | AO353_17995 | hypothetical protein | -1.6 | |
| L-Citrulline | AO353_18000 | allophanate hydrolase | -2.0 | |
| L-Citrulline | AO353_18480 | potassium transporter TrkH | -1.2 | |
| L-Citrulline | AO353_19040 | thioredoxin | +1.4 | |
| L-Citrulline | AO353_21620 | peptidylprolyl isomerase | +2.1 | |
| L-Citrulline | AO353_22365 | hypothetical protein | -1.3 | |
| L-Citrulline | AO353_22385 | dehydrogenase | -1.3 | |
| L-Citrulline | AO353_22390 | aldehyde dehydrogenase | -1.5 | |
| L-Citrulline | AO353_23775 | glycogen synthase | +1.1 | |
| L-Citrulline | AO353_24805 | TetR family transcriptional regulator | -2.0 | |
| L-Citrulline | AO353_25175 | AsnC family transcriptional regulator | +1.5 | |
| L-Citrulline | AO353_25185 | ornithine cyclodeaminase | +1.0 | Yes |
| L-Citrulline | AO353_25190 | amino acid transporter | +1.5 | |
| L-Citrulline | AO353_25630 | arginine N-succinyltransferase | -4.4 | |
| L-Citrulline | AO353_25635 | citrulline utilization hydrolase (from data) | -4.7 | Yes |
| L-Citrulline | AO353_25645 | amino acid transporter | -3.4 | Yes |
| L-Citrulline | AO353_26635 | branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) | +1.3 | |
| L-Citrulline | AO353_29185 | TetR family transcriptional regulator | +1.9 | |
| L-Glutamic acid monopotassium salt monohydrate | AO353_16270 | histidine kinase | -1.6 | Yes |
| L-Glutamic acid monopotassium salt monohydrate | AO353_16285 | ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) | -1.8 | Yes |
| L-Glutamic acid monopotassium salt monohydrate | AO353_16290 | ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) | -1.5 | Yes |
| L-Glutamine | AO353_09955 | sodium:alanine symporter | -2.4 | Yes |
| L-Glutamine | AO353_16270 | histidine kinase | -1.5 | Yes |
| L-Glutamine | AO353_16285 | ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) | -1.4 | Yes |
| L-Glutamine | AO353_26790 | Glutaminase (EC 3.5.1.2) (from data) | -3.4 | Yes |
| L-Histidine | AO353_10715 | LysR family transcriptional regulator | -1.4 | Yes |
| L-Histidine | AO353_12235 | Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) | -3.8 | Yes |
| L-Histidine | AO353_12245 | hypothetical protein | -3.6 | Yes |
| L-Histidine | AO353_12250 | Urocanate hydratase (EC 4.2.1.49) (from data) | -3.6 | Yes |
| L-Histidine | AO353_12255 | sulfonate ABC transporter substrate-binding protein | -2.5 | Yes |
| L-Histidine | AO353_12275 | histidine permease (from data) | -2.2 | Yes |
| L-Histidine | AO353_12280 | Imidazolonepropionase (EC 3.5.2.7) (from data) | -3.5 | Yes |
| L-Histidine | AO353_12285 | N-formylglutamate deformylase (EC 3.5.1.68) (from data) | -3.9 | Yes |
| L-Isoleucine | AO353_00895 | 2-methylcitrate synthase | -3.4 | Yes |
| L-Isoleucine | AO353_05985 | 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) | -1.4 | Yes |
| L-Isoleucine | AO353_05995 | LysR family transcriptional regulator | -1.2 | |
| L-Isoleucine | AO353_13340 | amino acid ABC transporter substrate-binding protein | -1.4 | Yes |
| L-Isoleucine | AO353_13345 | branched-chain amino acid transporter permease subunit LivH | -1.4 | Yes |
| L-Isoleucine | AO353_13350 | branched-chain amino acid ABC transporter permease | -1.6 | Yes |
| L-Isoleucine | AO353_13355 | ABC transporter ATP-binding protein | -1.5 | Yes |
| L-Isoleucine | AO353_17105 | ABC transporter ATP-binding protein | -3.2 | Yes |
| L-Isoleucine | AO353_17115 | leucine/isoleucine/valine transporter permease subunit | -1.5 | Yes |
| L-Isoleucine | AO353_17120 | branched-chain amino acid transporter permease subunit LivH | -1.5 | Yes |
| L-Isoleucine | AO353_17125 | leucine ABC transporter substrate-binding protein | -1.6 | Yes |
| L-Isoleucine | AO353_22345 | ATPase | -1.3 | |
| L-Isoleucine | AO353_25685 | acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) (from data) | -3.7 | Yes |
| L-Isoleucine | AO353_25695 | AMP-binding protein | -2.6 | Yes |
| L-Isoleucine | AO353_25705 | AraC family transcriptional regulator | -2.8 | Yes |
| L-Isoleucine | AO353_26630 | ArsR family transcriptional regulator | -3.1 | Yes |
| L-Isoleucine | AO353_26635 | branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) | -3.1 | Yes |
| L-Leucine | AO353_00895 | 2-methylcitrate synthase | -1.6 | Yes |
| L-Leucine | AO353_02580 | Long-chain fatty acid transport protein | -1.9 | |
| L-Leucine | AO353_07335 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.5 | |
| L-Leucine | AO353_07340 | yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.5 | |
| L-Leucine | AO353_07345 | ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.3 | |
| L-Leucine | AO353_13005 | channel protein TolC | +1.4 | |
| L-Leucine | AO353_13340 | amino acid ABC transporter substrate-binding protein | -1.2 | Yes |
| L-Leucine | AO353_13350 | branched-chain amino acid ABC transporter permease | -1.0 | Yes |
| L-Leucine | AO353_16310 | phosphoenolpyruvate carboxylase | -2.3 | Yes |
| L-Leucine | AO353_17105 | ABC transporter ATP-binding protein | -1.9 | Yes |
| L-Leucine | AO353_17115 | leucine/isoleucine/valine transporter permease subunit | -1.6 | Yes |
| L-Leucine | AO353_17120 | branched-chain amino acid transporter permease subunit LivH | -1.6 | Yes |
| L-Leucine | AO353_17125 | leucine ABC transporter substrate-binding protein | -1.3 | Yes |
| L-Leucine | AO353_18220 | isocitrate dehydrogenase | -3.7 | Yes |
| L-Leucine | AO353_20350 | Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) | -3.4 | Yes |
| L-Leucine | AO353_23610 | serine/threonine protein phosphatase | -1.7 | Yes |
| L-Leucine | AO353_23630 | aminopeptidase | -1.1 | |
| L-Leucine | AO353_26635 | branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) | -3.1 | Yes |
| L-Leucine | AO353_28990 | LOG family protein | -1.7 | |
| L-Malic acid disodium salt monohydrate | AO353_02800 | C4-dicarboxylate transporter | -2.6 | Yes |
| L-Malic acid disodium salt monohydrate | AO353_11860 | Fis family transcriptional regulator | -2.1 | Yes |
| L-Malic acid disodium salt monohydrate | AO353_11865 | ATPase | -1.7 | Yes |
| L-Ornithine | AO353_00910 | ATP-dependent zinc protease | +1.1 | |
| L-Ornithine | AO353_01210 | GntR family transcriptional regulator | -2.4 | |
| L-Ornithine | AO353_02135 | hypothetical protein | -1.3 | |
| L-Ornithine | AO353_03085 | phospholipase | +1.1 | |
| L-Ornithine | AO353_03465 | arginine-ornithine antiporter | +3.1 | Yes |
| L-Ornithine | AO353_03470 | arginine deiminase | +3.5 | |
| L-Ornithine | AO353_03635 | mechanosensitive ion channel protein MscS | +1.3 | |
| L-Ornithine | AO353_04360 | protein-disulfide isomerase | +2.2 | |
| L-Ornithine | AO353_04865 | hypothetical protein | +7.8 | |
| L-Ornithine | AO353_04870 | AraC family transcriptional regulator | +7.4 | |
| L-Ornithine | AO353_06515 | hypothetical protein | +2.4 | |
| L-Ornithine | AO353_06735 | thioredoxin | +2.0 | |
| L-Ornithine | AO353_07190 | S-adenosylmethionine decarboxylase proenzyme | -1.2 | |
| L-Ornithine | AO353_07265 | spermidine/putrescine ABC transporter ATP-binding protein | +2.6 | |
| L-Ornithine | AO353_08595 | Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) | +4.6 | |
| L-Ornithine | AO353_08680 | porin | -1.1 | |
| L-Ornithine | AO353_09065 | hypothetical protein | variable | Yes |
| L-Ornithine | AO353_09585 | Hcp1 family type VI secretion system effector | +1.1 | |
| L-Ornithine | AO353_09700 | hypothetical protein | -1.8 | |
| L-Ornithine | AO353_12810 | L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) | -1.8 | Yes |
| L-Ornithine | AO353_13025 | ADP-ribose pyrophosphatase | +1.3 | |
| L-Ornithine | AO353_13930 | Killer protein | variable | |
| L-Ornithine | AO353_14010 | GntR family transcriptional regulator | variable | |
| L-Ornithine | AO353_14460 | competence protein TfoX | +1.4 | |
| L-Ornithine | AO353_21620 | peptidylprolyl isomerase | +2.3 | |
| L-Ornithine | AO353_24805 | TetR family transcriptional regulator | -1.7 | |
| L-Ornithine | AO353_25175 | AsnC family transcriptional regulator | -2.0 | |
| L-Ornithine | AO353_25185 | ornithine cyclodeaminase | -1.6 | Yes |
| L-Ornithine | AO353_25190 | amino acid transporter | -1.5 | |
| L-Ornithine | AO353_25630 | arginine N-succinyltransferase | -3.5 | |
| L-Ornithine | AO353_25635 | citrulline utilization hydrolase (from data) | -2.3 | Yes |
| L-Ornithine | AO353_25645 | amino acid transporter | +5.6 | Yes |
| L-Ornithine | AO353_25650 | amino acid ABC transporter permease | +5.8 | |
| L-Ornithine | AO353_25655 | amino acid ABC transporter permease | +6.1 | |
| L-Ornithine | AO353_25660 | ABC transporter substrate-binding protein | +7.1 | |
| L-Ornithine | AO353_25900 | mannitol dehydrogenase | +1.2 | |
| L-Ornithine | AO353_29185 | TetR family transcriptional regulator | +1.5 | |
| L-Phenylalanine | AO353_15550 | Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) | -3.8 | Yes |
| L-Phenylalanine | AO353_18575 | tyrosine aminotransferase (EC 2.6.1.57) (from data) | -3.2 | Yes |
| L-Phenylalanine | AO353_18585 | Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) | -3.6 | Yes |
| L-Phenylalanine | AO353_18590 | AAA family ATPase | -3.3 | Yes |
| L-Phenylalanine | AO353_20545 | excinuclease ABC subunit B | -1.2 | |
| L-Phenylalanine | AO353_26925 | 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) | -3.8 | Yes |
| L-Proline | AO353_12810 | L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) | -3.9 | Yes |
| L-Proline | AO353_13350 | branched-chain amino acid ABC transporter permease | -1.1 | Yes |
| L-Serine | AO353_03510 | glycine cleavage system protein T | +4.8 | |
| L-Serine | AO353_07335 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | +2.5 | |
| L-Serine | AO353_07340 | yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | +2.6 | |
| L-Serine | AO353_07345 | ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | +2.5 | |
| L-Serine | AO353_13005 | channel protein TolC | +1.5 | |
| L-Serine | AO353_14225 | laccase | +1.2 | |
| L-Serine | AO353_15500 | L-serine ammonia-lyase (EC 4.3.1.17) (from data) | -2.6 | |
| L-Serine | AO353_15505 | LysR family transcriptional regulator | -2.3 | |
| L-Serine | AO353_17475 | hypothetical protein | +1.9 | |
| L-Tryptophan | AO353_02580 | Long-chain fatty acid transport protein | -1.8 | |
| L-Tryptophan | AO353_05935 | Kynureninase (EC 3.7.1.3) (from data) | -2.8 | Yes |
| L-Tryptophan | AO353_05940 | AsnC family transcriptional regulator | -2.6 | Yes |
| L-Tryptophan | AO353_05950 | Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) | -1.4 | Yes |
| L-Tryptophan | AO353_05955 | Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) | -1.8 | Yes |
| L-Tryptophan | AO353_05960 | anthranilate dioxygenase reductase | -1.4 | Yes |
| L-Tryptophan | AO353_05970 | Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) | -3.0 | Yes |
| L-Tryptophan | AO353_05975 | Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) | -3.3 | Yes |
| L-Tryptophan | AO353_05980 | cupin | -2.5 | |
| L-Tryptophan | AO353_09160 | AsnC family transcriptional regulator | -2.6 | Yes |
| L-Tryptophan | AO353_17195 | 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) | -2.4 | Yes |
| L-Tryptophan | AO353_17200 | 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data) | -2.5 | Yes |
| L-Tryptophan | AO353_17230 | Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) (from data) | -3.0 | |
| L-Tryptophan | AO353_22355 | multidrug ABC transporter permease | -2.1 | |
| L-Tryptophan | AO353_22385 | dehydrogenase | -1.6 | |
| L-Tryptophan | AO353_23525 | Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data) | -2.5 | Yes |
| L-Tryptophan | AO353_28990 | LOG family protein | -1.6 | |
| L-Valine | AO353_00895 | 2-methylcitrate synthase | -3.5 | Yes |
| L-Valine | AO353_02580 | Long-chain fatty acid transport protein | -1.9 | |
| L-Valine | AO353_05985 | 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) | -3.7 | Yes |
| L-Valine | AO353_05990 | Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) | -3.5 | Yes |
| L-Valine | AO353_05995 | LysR family transcriptional regulator | -3.6 | Yes |
| L-Valine | AO353_07205 | lipoate--protein ligase | -2.6 | Yes |
| L-Valine | AO353_08560 | spermidine/putrescine ABC transporter permease | -1.8 | |
| L-Valine | AO353_08735 | glycine cleavage system protein T | -1.4 | |
| L-Valine | AO353_09955 | sodium:alanine symporter | +1.3 | Yes |
| L-Valine | AO353_11100 | acyl-CoA dehydrogenase | -1.0 | Yes |
| L-Valine | AO353_11105 | CoA-transferase | -1.1 | Yes |
| L-Valine | AO353_11685 | serine acetyltransferase | -2.5 | |
| L-Valine | AO353_16310 | phosphoenolpyruvate carboxylase | -2.0 | |
| L-Valine | AO353_20225 | 1-aminocyclopropane-1-carboxylate deaminase | -2.2 | Yes |
| L-Valine | AO353_20350 | Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) | -1.5 | Yes |
| L-Valine | AO353_25665 | 3-hydroxy-isobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) | -3.6 | Yes |
| L-Valine | AO353_25670 | isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) | -3.4 | Yes |
| L-Valine | AO353_25695 | AMP-binding protein | -1.8 | |
| L-Valine | AO353_25705 | AraC family transcriptional regulator | -1.7 | |
| L-Valine | AO353_25960 | threonine dehydratase | -1.9 | Yes |
| L-Valine | AO353_26630 | ArsR family transcriptional regulator | -3.4 | Yes |
| Potassium acetate | AO353_00345 | NADPH-dependent 7-cyano-7-deazaguanine reductase | -1.5 | |
| Potassium acetate | AO353_01040 | polyhydroxyalkanoate synthesis regulator | +1.1 | |
| Potassium acetate | AO353_01050 | poly(3-hydroxyalkanoate) synthetase | +2.0 | |
| Potassium acetate | AO353_02165 | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | -1.3 | |
| Potassium acetate | AO353_03310 | long-chain fatty acid--CoA ligase | +1.7 | |
| Potassium acetate | AO353_05055 | peptidylprolyl isomerase | +1.3 | |
| Potassium acetate | AO353_05490 | transcriptional regulator | +1.5 | |
| Potassium acetate | AO353_05695 | transcriptional regulator PdhR | -2.0 | |
| Potassium acetate | AO353_06550 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | -2.3 | Yes |
| Potassium acetate | AO353_07180 | zinc-binding protein | -1.4 | Yes |
| Potassium acetate | AO353_07340 | yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.1 | |
| Potassium acetate | AO353_07470 | acetylornithine aminotransferase | -2.0 | Yes |
| Potassium acetate | AO353_07475 | sulfurase | -3.1 | |
| Potassium acetate | AO353_07480 | LysR family transcriptional regulator | -2.8 | |
| Potassium acetate | AO353_08455 | hypothetical protein | +2.4 | |
| Potassium acetate | AO353_08575 | ABC transporter substrate-binding protein | +2.8 | |
| Potassium acetate | AO353_08580 | spermidine/putrescine ABC transporter substrate-binding protein | -1.5 | |
| Potassium acetate | AO353_08590 | glutamine synthetase | -2.3 | |
| Potassium acetate | AO353_08595 | Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) | -2.3 | |
| Potassium acetate | AO353_10810 | radical SAM protein | +4.1 | |
| Potassium acetate | AO353_10815 | carbonate dehydratase | -3.9 | Yes |
| Potassium acetate | AO353_11075 | acetyl-CoA hydrolase | -2.7 | Yes |
| Potassium acetate | AO353_11860 | Fis family transcriptional regulator | +1.5 | |
| Potassium acetate | AO353_13570 | TonB-dependent receptor | +1.4 | |
| Potassium acetate | AO353_15510 | ribosomal subunit interface protein | +2.1 | |
| Potassium acetate | AO353_16310 | phosphoenolpyruvate carboxylase | -2.9 | |
| Potassium acetate | AO353_16800 | damage-inducible protein CinA | +1.1 | |
| Potassium acetate | AO353_16815 | cytochrome D ubiquinol oxidase subunit II | -1.1 | |
| Potassium acetate | AO353_18990 | transcription elongation factor GreB | -1.3 | |
| Potassium acetate | AO353_23610 | serine/threonine protein phosphatase | -2.8 | Yes |
| Potassium acetate | AO353_25580 | LysR family transcriptional regulator | -1.7 | |
| Potassium acetate | AO353_26640 | 2-oxoisovalerate dehydrogenase | -1.6 | |
| Potassium acetate | AO353_27690 | isocitrate dehydrogenase | +1.3 | |
| Potassium acetate | AO353_28035 | hypothetical protein | -2.3 | |
| Putrescine Dihydrochloride | AO353_02580 | Long-chain fatty acid transport protein | -1.5 | |
| Putrescine Dihydrochloride | AO353_08565 | spermidine/putrescine ABC transporter permease | -3.2 | Yes |
| Putrescine Dihydrochloride | AO353_08570 | transporter | -3.8 | Yes |
| Putrescine Dihydrochloride | AO353_08580 | spermidine/putrescine ABC transporter substrate-binding protein | -4.0 | Yes |
| Putrescine Dihydrochloride | AO353_08585 | Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) | -2.0 | Yes |
| Putrescine Dihydrochloride | AO353_08590 | glutamine synthetase | -2.5 | Yes |
| Putrescine Dihydrochloride | AO353_09160 | AsnC family transcriptional regulator | -1.1 | Yes |
| Putrescine Dihydrochloride | AO353_11505 | succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) | -3.5 | Yes |
| Putrescine Dihydrochloride | AO353_22355 | multidrug ABC transporter permease | -1.5 | Yes |
| Putrescine Dihydrochloride | AO353_22380 | amino acid ABC transporter substrate-binding protein | -1.2 | Yes |
| Putrescine Dihydrochloride | AO353_29305 | Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) | -3.7 | Yes |
| Putrescine Dihydrochloride | AO353_29310 | transporter | -3.6 | |
| Putrescine Dihydrochloride | AO353_29315 | spermidine/putrescine ABC transporter permease | -4.0 | Yes |
| Putrescine Dihydrochloride | AO353_29320 | putrescine ABC transporter, permease component (from data) | -3.8 | |
| Sodium D,L-Lactate | AO353_05700 | L-lactate permease | -3.5 | Yes |
| Sodium D,L-Lactate | AO353_05705 | oxidoreductase | -4.4 | Yes |
| Sodium D,L-Lactate | AO353_05710 | (Fe-S)-binding protein | -3.6 | Yes |
| Sodium D,L-Lactate | AO353_05715 | lactate utilization protein B/C | -4.4 | Yes |
| Sodium D-Lactate | AO353_02140 | BolA family transcriptional regulator | -2.6 | Yes |
| Sodium D-Lactate | AO353_05700 | L-lactate permease | -4.3 | Yes |
| Sodium D-Lactate | AO353_05705 | oxidoreductase | -5.1 | Yes |
| Sodium D-Lactate | AO353_05710 | (Fe-S)-binding protein | -3.8 | Yes |
| Sodium D-Lactate | AO353_05715 | lactate utilization protein B/C | -4.6 | Yes |
| Sodium D-Lactate | AO353_05720 | 4Fe-4S ferredoxin | -4.1 | Yes |
| Sodium D-Lactate | AO353_06515 | hypothetical protein | -4.2 | Yes |
| Sodium D-Lactate | AO353_06520 | murein hydrolase transporter LrgA | -3.2 | Yes |
| Sodium D-Lactate | AO353_10905 | zinc ABC transporter ATP-binding protein | -1.4 | Yes |
| Sodium D-Lactate | AO353_13690 | thiol:disulfide interchange protein | -1.4 | |
| Sodium Fumarate dibasic | AO353_02800 | C4-dicarboxylate transporter | -3.6 | Yes |
| Sodium Fumarate dibasic | AO353_11860 | Fis family transcriptional regulator | -3.5 | Yes |
| Sodium Fumarate dibasic | AO353_11865 | ATPase | -1.7 | Yes |
| Sodium L-Lactate | AO353_02140 | BolA family transcriptional regulator | -1.5 | Yes |
| Sodium L-Lactate | AO353_05700 | L-lactate permease | -3.4 | Yes |
| Sodium L-Lactate | AO353_05705 | oxidoreductase | -4.7 | Yes |
| Sodium L-Lactate | AO353_05710 | (Fe-S)-binding protein | -3.5 | Yes |
| Sodium L-Lactate | AO353_05715 | lactate utilization protein B/C | -4.3 | Yes |
| Sodium butyrate | AO353_01300 | proteophosphoglycan precursor | -2.3 | Yes |
| Sodium butyrate | AO353_01315 | TetR family transcriptional regulator | +3.3 | Yes |
| Sodium butyrate | AO353_01495 | cysteine protease | +1.1 | |
| Sodium butyrate | AO353_07485 | Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) | -3.7 | Yes |
| Sodium butyrate | AO353_07490 | diguanylate cyclase | +1.6 | Yes |
| Sodium butyrate | AO353_09840 | chorismate--pyruvate lyase | -1.8 | |
| Sodium butyrate | AO353_10215 | methyltransferase | -1.1 | |
| Sodium butyrate | AO353_13005 | channel protein TolC | +2.7 | |
| Sodium butyrate | AO353_15010 | long-chain fatty acid--CoA ligase | +1.1 | |
| Sodium butyrate | AO353_15015 | adhesin | -1.2 | |
| Sodium butyrate | AO353_15020 | hypothetical protein | -1.0 | Yes |
| Sodium butyrate | AO353_16310 | phosphoenolpyruvate carboxylase | -2.5 | |
| Sodium butyrate | AO353_16360 | RND transporter | +1.9 | |
| Sodium butyrate | AO353_16365 | multidrug transporter AcrB | +1.7 | |
| Sodium butyrate | AO353_18010 | hypothetical protein | -1.0 | Yes |
| Sodium butyrate | AO353_21050 | hypothetical protein | +1.4 | |
| Sodium butyrate | AO353_21060 | RND transporter | +1.3 | |
| Sodium butyrate | AO353_25680 | 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) (from data) | -2.6 | |
| Sodium butyrate | AO353_25685 | acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) (from data) | -2.7 | |
| Sodium butyrate | AO353_25695 | AMP-binding protein | -2.5 | |
| Sodium propionate | AO353_00440 | hypothetical protein | +1.4 | |
| Sodium propionate | AO353_00765 | D-alanyl-D-alanine carboxypeptidase | +1.8 | |
| Sodium propionate | AO353_00820 | uroporphyrin-III methyltransferase | -1.6 | |
| Sodium propionate | AO353_00845 | CmaX protein | -1.7 | |
| Sodium propionate | AO353_01225 | ABC transporter substrate-binding protein | +1.0 | |
| Sodium propionate | AO353_01345 | aminodeoxychorismate lyase | +1.8 | |
| Sodium propionate | AO353_02135 | hypothetical protein | +1.4 | Yes |
| Sodium propionate | AO353_03065 | hypothetical protein | -1.4 | Yes |
| Sodium propionate | AO353_04845 | LysR family transcriptional regulator | +4.6 | Yes |
| Sodium propionate | AO353_06430 | murein transglycosylase | +1.3 | |
| Sodium propionate | AO353_06530 | peptidase C13 | -1.2 | |
| Sodium propionate | AO353_06550 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | -2.9 | |
| Sodium propionate | AO353_07255 | polyamine ABC transporter substrate-binding protein | +1.6 | |
| Sodium propionate | AO353_08705 | hypothetical protein | +1.0 | |
| Sodium propionate | AO353_08760 | Xaa-Pro aminopeptidase | +1.4 | |
| Sodium propionate | AO353_08770 | hypothetical protein | -2.5 | Yes |
| Sodium propionate | AO353_08955 | transcriptional regulator | +2.1 | |
| Sodium propionate | AO353_10215 | methyltransferase | -2.3 | |
| Sodium propionate | AO353_10255 | ABC transporter | +1.4 | |
| Sodium propionate | AO353_10260 | sugar ABC transporter ATP-binding protein | +1.4 | |
| Sodium propionate | AO353_10270 | glycosyl transferase | +1.9 | |
| Sodium propionate | AO353_10450 | hypothetical protein | +1.5 | |
| Sodium propionate | AO353_10965 | N-acetylmuramoyl-L-alanine amidase | +1.4 | Yes |
| Sodium propionate | AO353_10995 | hypothetical protein | -1.5 | Yes |
| Sodium propionate | AO353_11075 | acetyl-CoA hydrolase | -1.4 | Yes |
| Sodium propionate | AO353_12055 | cell envelope biogenesis protein AsmA | -1.9 | |
| Sodium propionate | AO353_12305 | D-tyrosyl-tRNA(Tyr) deacylase | +1.8 | |
| Sodium propionate | AO353_13020 | hypothetical protein | -1.5 | |
| Sodium propionate | AO353_16110 | glycosyl transferase family 51 | -2.1 | Yes |
| Sodium propionate | AO353_16310 | phosphoenolpyruvate carboxylase | -2.1 | Yes |
| Sodium propionate | AO353_16825 | hypothetical protein | -1.9 | |
| Sodium propionate | AO353_17065 | hypothetical protein | -1.0 | |
| Sodium propionate | AO353_17375 | beta-D-glucoside glucohydrolase | -1.4 | |
| Sodium propionate | AO353_17810 | LysR family transcriptional regulator | -1.6 | |
| Sodium propionate | AO353_18990 | transcription elongation factor GreB | -1.4 | |
| Sodium propionate | AO353_20850 | hypothetical protein | -2.3 | |
| Sodium propionate | AO353_21270 | anti-sigma factor | +1.9 | |
| Sodium propionate | AO353_22585 | HxlR family transcriptional regulator | -2.6 | |
| Sodium propionate | AO353_22785 | peptidase | -1.4 | |
| Sodium propionate | AO353_23765 | 4-alpha-glucanotransferase | -1.0 | |
| Sodium propionate | AO353_25500 | phosphoglycerate mutase | +2.4 | |
| Sodium propionate | AO353_25835 | 6-phosphogluconate dehydrogenase | +1.6 | |
| Sodium propionate | AO353_25960 | threonine dehydratase | -1.4 | |
| Sodium propionate | AO353_27080 | hypothetical protein | +1.6 | |
| Sodium pyruvate | AO353_01870 | hypothetical protein | -1.1 | Yes |
| Sodium pyruvate | AO353_06550 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | +1.6 | |
| Sodium pyruvate | AO353_11170 | hypothetical protein | +1.5 | Yes |
| Sodium pyruvate | AO353_16110 | glycosyl transferase family 51 | +1.2 | |
| Sodium pyruvate | AO353_25245 | regulator | -2.4 | Yes |
| Sodium pyruvate | AO353_25250 | histidine kinase | -1.3 | Yes |
| Sodium pyruvate | AO353_25255 | large subunit of pyruvate transporter (CstA) (from data) | -2.7 | Yes |
| Sodium succinate dibasic hexahydrate | AO353_02800 | C4-dicarboxylate transporter | -3.1 | Yes |
| Sodium succinate dibasic hexahydrate | AO353_11860 | Fis family transcriptional regulator | -3.1 | Yes |
| Trisodium citrate dihydrate | AO353_03975 | peptidase | -1.3 | Yes |
| Trisodium citrate dihydrate | AO353_03980 | thiol oxidoreductase | -1.6 | Yes |
| Trisodium citrate dihydrate | AO353_08420 | ATPase P | -3.6 | Yes |
| Trisodium citrate dihydrate | AO353_08425 | Cd(II)/Pb(II)-responsive transcriptional regulator | -4.3 | Yes |
| Trisodium citrate dihydrate | AO353_11040 | citrate transporter | -1.2 | Yes |
| Trisodium citrate dihydrate | AO353_16005 | copper oxidase | -1.3 | Yes |
| Trisodium citrate dihydrate | AO353_17570 | tripartite tricarboxylate transporter TctA | -4.0 | Yes |
| Trisodium citrate dihydrate | AO353_17575 | hypothetical protein | -4.0 | Yes |
| Trisodium citrate dihydrate | AO353_17580 | tricarboxylic transporter | -3.4 | Yes |
| Trisodium citrate dihydrate | AO353_17585 | porin | -2.8 | Yes |
| Trisodium citrate dihydrate | AO353_17590 | transcriptional regulator | -4.3 | Yes |
| Trisodium citrate dihydrate | AO353_17595 | histidine kinase | -3.9 | Yes |
| Trisodium citrate dihydrate | AO353_22345 | ATPase | -1.8 | |
| Trisodium citrate dihydrate | AO353_26685 | cobalt efflux pump (from data) | -5.2 | Yes |
| Tween 20 | AO353_01315 | TetR family transcriptional regulator | -1.3 | |
| Tween 20 | AO353_06515 | hypothetical protein | -3.7 | Yes |
| Tween 20 | AO353_06520 | murein hydrolase transporter LrgA | -3.0 | Yes |
| Tween 20 | AO353_07335 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.1 | |
| Tween 20 | AO353_07340 | yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | -1.3 | |
| Tween 20 | AO353_07485 | Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) | -1.8 | Yes |
| Tween 20 | AO353_11090 | NADP transhydrogenase subunit alpha | -1.5 | Yes |
| Tween 20 | AO353_12400 | TetR family transcriptional regulator | -2.1 | Yes |
| Tween 20 | AO353_13665 | hypothetical protein | -1.7 | |
| Tween 20 | AO353_18220 | isocitrate dehydrogenase | -3.0 | Yes |
| Uridine | AO353_06080 | methylmalonate-semialdehyde dehydrogenase | -1.7 | Yes |
| Uridine | AO353_06085 | omega amino acid--pyruvate aminotransferase | -1.1 | Yes |
| Uridine | AO353_06090 | LysR family transcriptional regulator | -1.2 | Yes |
| Uridine | AO353_20820 | sugar ABC transporter ATP-binding protein | -2.3 | Yes |
| Uridine | AO353_20825 | ABC transporter permease | -3.3 | Yes |
| Uridine | AO353_20830 | LacI family transcriptional regulator | -2.3 | |
| Uridine | AO353_20835 | Ribokinase (EC 2.7.1.15) (from data) | -3.0 | Yes |
| a-Ketoglutaric acid disodium salt hydrate | AO353_03800 | cytochrome C biogenesis protein CcmE | -3.4 | Yes |
| a-Ketoglutaric acid disodium salt hydrate | AO353_03805 | C4-dicarboxylate ABC transporter | -3.1 | Yes |
| a-Ketoglutaric acid disodium salt hydrate | AO353_03810 | Alpha-ketoglutarate permease, MFS superfamily (from data) | -4.3 | Yes |
| a-Ketoglutaric acid disodium salt hydrate | AO353_18660 | AAA family ATPase | +1.7 | |
| casamino acids | AO353_04200 | TetR family transcriptional regulator | +1.3 | |
| m-Inositol | AO353_03235 | glutamate-pyruvate aminotransferase | -1.7 | |
| m-Inositol | AO353_14055 | ATP-dependent protease | -1.2 | |
| m-Inositol | AO353_21335 | 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) | -3.9 | Yes |
| m-Inositol | AO353_21340 | Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) | -4.0 | Yes |
| m-Inositol | AO353_21345 | 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) | -4.1 | Yes |
| m-Inositol | AO353_21360 | 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) | -3.3 | Yes |
| m-Inositol | AO353_21365 | Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) | -3.0 | Yes |
| m-Inositol | AO353_21380 | rhizopine-binding protein | -3.4 | Yes |
| m-Inositol | AO353_21385 | m-Inositol ABC transporter, ATPase component (itaA) (from data) | -3.6 | Yes |
| m-Inositol | AO353_21390 | m-Inositol ABC transporter, permease component (iatP) (from data) | -3.0 | Yes |
| m-Inositol | AO353_28990 | LOG family protein | -1.8 | |