Specific Phenotypes for Pseudomonas fluorescens FW300-N2E3 in carbon source experiments

Condition Gene Description Fitness Cons.
Carnitine Hydrochloride AO353_01210 GntR family transcriptional regulator -2.0  
Carnitine Hydrochloride AO353_03235 glutamate-pyruvate aminotransferase -1.4  
Carnitine Hydrochloride AO353_05065 phosphate acetyltransferase -1.7 Yes
Carnitine Hydrochloride AO353_07335 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) -1.1  
Carnitine Hydrochloride AO353_07340 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) -1.4  
Carnitine Hydrochloride AO353_07345 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) -1.3  
Carnitine Hydrochloride AO353_07650 sarcosine oxidase subunit alpha -3.6 Yes
Carnitine Hydrochloride AO353_07655 sarcosine oxidase subunit delta -4.1 Yes
Carnitine Hydrochloride AO353_07660 sarcosine oxidase (5,10-methylenetetrahydrofolate-forming), beta subunit (EC 1.5.3.24) (from data) -3.6 Yes
Carnitine Hydrochloride AO353_07665 Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) -3.1 Yes
Carnitine Hydrochloride AO353_07675 ferredoxin -3.6 Yes
Carnitine Hydrochloride AO353_07680 Rieske (2Fe-2S) protein -4.2 Yes
Carnitine Hydrochloride AO353_07700 electron transfer flavoprotein subunit alpha -4.5 Yes
Carnitine Hydrochloride AO353_07705 DgcB Dimethylglycine demethylase subunit B (EC 1.5.3.-) (from data) -3.8 Yes
Carnitine Hydrochloride AO353_07710 DgcA Dimethylglycine demethylase subunit A (from data) -3.8 Yes
Carnitine Hydrochloride AO353_07715 hydrocarbon binding protein -3.6 Yes
Carnitine Hydrochloride AO353_07720 peptidase M19 -3.6 Yes
Carnitine Hydrochloride AO353_07735 AraC family transcriptional regulator -3.4 Yes
Carnitine Hydrochloride AO353_07740 ABC transporter for Carnitine, substrate-binding component (from data) -3.1 Yes
Carnitine Hydrochloride AO353_07745 NADPH:quinone reductase -4.4 Yes
Carnitine Hydrochloride AO353_07750 carnitine 3-dehydrogenase [EC:1.1.1.108] (from data) -4.2 Yes
Carnitine Hydrochloride AO353_07755 betainyl-CoA thiolase (EC 3.1.2.-) (from data) -3.0 Yes
Carnitine Hydrochloride AO353_07770 AraC family transcriptional regulator -3.2 Yes
Carnitine Hydrochloride AO353_07780 Carnitine ABC transporter, substrate-binding component CaiX (from data) -3.0 Yes
Carnitine Hydrochloride AO353_07785 ABC transporter for Carnitine, permease component (from data) -3.8 Yes
Carnitine Hydrochloride AO353_07790 ABC transporter for Carnitine, ATPase component (from data) -2.9 Yes
Carnitine Hydrochloride AO353_11080 NAD synthetase -1.4 Yes
Carnitine Hydrochloride AO353_16310 phosphoenolpyruvate carboxylase -1.4  
Carnitine Hydrochloride AO353_16880 potassium transporter Kup -2.3 Yes
Carnitine Hydrochloride AO353_27930 LysR family transcriptional regulator -2.5  
Carnitine Hydrochloride AO353_27935 succinyl-CoA--3-ketoacid-CoA transferase -2.5 Yes
Carnitine Hydrochloride AO353_27940 succinyl-CoA--3-ketoacid-CoA transferase -2.1 Yes
Cytidine AO353_00300 DNA helicase +1.6  
Cytidine AO353_00305 ATP-binding protein +1.3  
Cytidine AO353_03405 histidine kinase +1.9  
Cytidine AO353_03770 hypothetical protein +1.5  
Cytidine AO353_22355 multidrug ABC transporter permease -1.4 Yes
Cytidine AO353_22370 branched-chain amino acid ABC transporter substrate-binding protein -2.6  
Cytidine AO353_22380 amino acid ABC transporter substrate-binding protein -1.5  
Cytidine AO353_22385 dehydrogenase -1.3 Yes
D-Alanine AO353_09160 AsnC family transcriptional regulator -3.4 Yes
D-Alanine AO353_16120 D-alanine and L-alanine transporter (from data) -2.4 Yes
D-Fructose AO353_05475 PTS fructose transporter subunit IIBC -3.6 Yes
D-Fructose AO353_05485 Fructose-specific PTS system, I, HPr, and IIA components (from data) -4.2 Yes
D-Fructose AO353_12195 hypothetical protein +1.3  
D-Fructose AO353_12200 hypothetical protein +2.5  
D-Fructose AO353_24665 phosphoglucomutase +2.1  
D-Fructose AO353_25900 mannitol dehydrogenase +1.9 Yes
D-Gluconic Acid sodium salt AO353_26885 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) -2.6 Yes
D-Glucosamine Hydrochloride AO353_03255 LacI family transcriptional regulator +3.3 Yes
D-Glucosamine Hydrochloride AO353_03380 sugar ABC transporter ATP-binding protein +3.9 Yes
D-Glucosamine Hydrochloride AO353_03385 sugar ABC transporter permease +3.7 Yes
D-Glucosamine Hydrochloride AO353_03390 sugar ABC transporter permease +3.8 Yes
D-Glucosamine Hydrochloride AO353_03395 sugar ABC transporter substrate-binding protein +4.2 Yes
D-Glucosamine Hydrochloride AO353_04445 GntR family transcriptional regulator +6.6 Yes
D-Glucosamine Hydrochloride AO353_04450 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) +3.9 Yes
D-Glucosamine Hydrochloride AO353_04455 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) -3.7 Yes
D-Glucosamine Hydrochloride AO353_16050 porin +1.5  
D-Glucosamine Hydrochloride AO353_21710 ABC transporter for D-glucosamine, periplasmic substrate-binding component (from data) -2.1 Yes
D-Glucosamine Hydrochloride AO353_21715 ABC transporter for D-glucosamine, permease component 1 (from data) -2.2 Yes
D-Glucosamine Hydrochloride AO353_21720 ABC transporter for D-glucosamine, permease component 2 (from data) -1.7 Yes
D-Glucosamine Hydrochloride AO353_21740 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) -2.4 Yes
D-Glucose AO353_02755 peroxiredoxin -1.1  
D-Glucose AO353_03635 mechanosensitive ion channel protein MscS +1.3  
D-Glucose AO353_11930 ketosteroid isomerase -1.1  
D-Glucose AO353_14460 competence protein TfoX +1.3  
D-Glucose AO353_17665 glycine cleavage system protein R +1.2  
D-Glucose AO353_21620 peptidylprolyl isomerase +2.1  
D-Mannose AO353_03380 sugar ABC transporter ATP-binding protein -2.5 Yes
D-Mannose AO353_03385 sugar ABC transporter permease -1.9 Yes
D-Mannose AO353_03390 sugar ABC transporter permease -2.3 Yes
D-Mannose AO353_03395 sugar ABC transporter substrate-binding protein -2.8 Yes
D-Mannose AO353_03400 D-mannose isomerase (EC 5.3.1.7) (from data) -5.0 Yes
D-Mannose AO353_05475 PTS fructose transporter subunit IIBC -4.2 Yes
D-Mannose AO353_05485 Fructose-specific PTS system, I, HPr, and IIA components (from data) -4.4 Yes
D-Mannose AO353_22680 aldehyde dehydrogenase -1.0 Yes
D-Mannose AO353_23885 AraC family transcriptional regulator -5.4 Yes
D-Mannose AO353_25880 sugar ABC transporter substrate-binding protein -3.1 Yes
D-Mannose AO353_25885 sugar ABC transporter permease -2.2 Yes
D-Mannose AO353_25890 sugar ABC transporter permease -2.2 Yes
D-Mannose AO353_25895 ABC transporter ATP-binding protein -3.6 Yes
D-Mannose AO353_25900 mannitol dehydrogenase -2.4 Yes
D-Mannose AO353_25910 Fructokinase (EC 2.7.1.4) (from data) -4.6 Yes
D-Ribose AO353_00300 DNA helicase +2.2  
D-Ribose AO353_00305 ATP-binding protein +1.9  
D-Ribose AO353_05490 transcriptional regulator -1.5 Yes
D-Ribose AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -1.5  
D-Ribose AO353_12305 D-tyrosyl-tRNA(Tyr) deacylase +1.0  
D-Ribose AO353_20820 sugar ABC transporter ATP-binding protein -3.2 Yes
D-Ribose AO353_20825 ABC transporter permease -3.1 Yes
D-Ribose AO353_20830 LacI family transcriptional regulator -1.9 Yes
D-Ribose AO353_20835 Ribokinase (EC 2.7.1.15) (from data) -3.1 Yes
D-Ribose AO353_23805 aldo/keto reductase +1.1  
D-Ribose AO353_24665 phosphoglucomutase +1.5  
D-Serine AO353_25205 permease DsdX -2.7 Yes
D-Serine AO353_25210 D-serine ammonia-lyase (EC 4.3.1.18) (from data) -3.7 Yes
D-Serine AO353_25215 transcriptional regulator -4.0 Yes
D-Trehalose dihydrate AO353_03235 glutamate-pyruvate aminotransferase -1.7  
D-Trehalose dihydrate AO353_15975 GntR family transcriptional regulator +1.7  
D-Trehalose dihydrate AO353_15980 trehalose PTS system, EII-BC components TreB (from data) -4.1 Yes
D-Trehalose dihydrate AO353_15990 maltoporin -3.2 Yes
D-Trehalose dihydrate AO353_15995 trehalose-specific PTS system, I, HPr, and IIA components (from data) -3.4 Yes
Ethanol AO353_07430 pyrroloquinoline quinone biosynthesis protein PqqF -1.2 Yes
Ethanol AO353_13690 thiol:disulfide interchange protein -1.3  
Ethanol AO353_18220 isocitrate dehydrogenase -1.5  
Ethanol AO353_22355 multidrug ABC transporter permease -2.6 Yes
Ethanol AO353_22365 hypothetical protein -2.3 Yes
Ethanol AO353_22380 amino acid ABC transporter substrate-binding protein -1.9 Yes
Ethanol AO353_22385 dehydrogenase -2.6 Yes
Glycerol AO353_03235 glutamate-pyruvate aminotransferase -1.5  
Glycerol AO353_05700 L-lactate permease -2.2 Yes
Glycerol AO353_05705 oxidoreductase -2.5 Yes
Glycerol AO353_05710 (Fe-S)-binding protein -2.1 Yes
Glycerol AO353_05715 lactate utilization protein B/C -2.6  
Glycerol AO353_05720 4Fe-4S ferredoxin -2.3 Yes
Glycerol AO353_06515 hypothetical protein -2.4 Yes
Glycerol AO353_06520 murein hydrolase transporter LrgA -1.8 Yes
L-Alanine AO353_09160 AsnC family transcriptional regulator -3.4 Yes
L-Alanine AO353_16120 D-alanine and L-alanine transporter (from data) -1.5 Yes
L-Arginine AO353_03040 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) -3.2 Yes
L-Arginine AO353_03045 ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) -2.6 Yes
L-Arginine AO353_08595 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) -3.1 Yes
L-Arginine AO353_10905 zinc ABC transporter ATP-binding protein -1.4 Yes
L-Arginine AO353_11505 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) -1.4  
L-Asparagine AO353_00630 (Fe-S)-binding protein -1.5  
L-Asparagine AO353_09955 sodium:alanine symporter -3.2 Yes
L-Asparagine AO353_09960 L-asparaginase (EC 3.5.1.1) (from data) -4.0 Yes
L-Asparagine AO353_16270 histidine kinase -1.6 Yes
L-Asparagine AO353_16285 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) -1.8 Yes
L-Asparagine AO353_16290 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) -1.9 Yes
L-Aspartic Acid AO353_16270 histidine kinase -2.4  
L-Aspartic Acid AO353_16285 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) -2.3 Yes
L-Aspartic Acid AO353_16290 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) -2.8  
L-Aspartic Acid AO353_26530 hypothetical protein -2.5  
L-Citrulline AO353_02265 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific +1.2  
L-Citrulline AO353_03085 phospholipase variable  
L-Citrulline AO353_03635 mechanosensitive ion channel protein MscS variable  
L-Citrulline AO353_04075 electron transporter RnfG -1.5  
L-Citrulline AO353_04135 bacterioferritin variable  
L-Citrulline AO353_04955 dihydrofolate reductase -1.8  
L-Citrulline AO353_08080 chemotaxis protein -1.8  
L-Citrulline AO353_08595 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) variable  
L-Citrulline AO353_10260 sugar ABC transporter ATP-binding protein variable  
L-Citrulline AO353_11225 disulfide bond formation protein DsbA variable  
L-Citrulline AO353_11505 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) variable  
L-Citrulline AO353_14460 competence protein TfoX variable  
L-Citrulline AO353_16310 phosphoenolpyruvate carboxylase variable  
L-Citrulline AO353_17665 glycine cleavage system protein R +1.5  
L-Citrulline AO353_17995 hypothetical protein -1.6  
L-Citrulline AO353_18000 allophanate hydrolase -2.0  
L-Citrulline AO353_18480 potassium transporter TrkH -1.2  
L-Citrulline AO353_19040 thioredoxin +1.4  
L-Citrulline AO353_21620 peptidylprolyl isomerase +2.1  
L-Citrulline AO353_22365 hypothetical protein -1.3  
L-Citrulline AO353_22385 dehydrogenase -1.3  
L-Citrulline AO353_22390 aldehyde dehydrogenase -1.5  
L-Citrulline AO353_23775 glycogen synthase +1.1  
L-Citrulline AO353_24805 TetR family transcriptional regulator -2.0  
L-Citrulline AO353_25175 AsnC family transcriptional regulator +1.5  
L-Citrulline AO353_25185 ornithine cyclodeaminase +1.0 Yes
L-Citrulline AO353_25190 amino acid transporter +1.5  
L-Citrulline AO353_25630 arginine N-succinyltransferase -4.4  
L-Citrulline AO353_25635 citrulline utilization hydrolase (from data) -4.7 Yes
L-Citrulline AO353_25645 amino acid transporter -3.4 Yes
L-Citrulline AO353_26635 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) +1.3  
L-Citrulline AO353_29185 TetR family transcriptional regulator +1.9  
L-Glutamic acid monopotassium salt monohydrate AO353_16270 histidine kinase -1.6 Yes
L-Glutamic acid monopotassium salt monohydrate AO353_16285 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) -1.8 Yes
L-Glutamic acid monopotassium salt monohydrate AO353_16290 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) -1.5 Yes
L-Glutamine AO353_09955 sodium:alanine symporter -2.4 Yes
L-Glutamine AO353_16270 histidine kinase -1.5 Yes
L-Glutamine AO353_16285 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) -1.4 Yes
L-Glutamine AO353_26790 Glutaminase (EC 3.5.1.2) (from data) -3.4 Yes
L-Histidine AO353_10715 LysR family transcriptional regulator -1.4 Yes
L-Histidine AO353_12235 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) -3.8 Yes
L-Histidine AO353_12245 hypothetical protein -3.6 Yes
L-Histidine AO353_12250 Urocanate hydratase (EC 4.2.1.49) (from data) -3.6 Yes
L-Histidine AO353_12255 sulfonate ABC transporter substrate-binding protein -2.5 Yes
L-Histidine AO353_12275 histidine permease (from data) -2.2 Yes
L-Histidine AO353_12280 Imidazolonepropionase (EC 3.5.2.7) (from data) -3.5 Yes
L-Histidine AO353_12285 N-formylglutamate deformylase (EC 3.5.1.68) (from data) -3.9 Yes
L-Isoleucine AO353_00895 2-methylcitrate synthase -3.4 Yes
L-Isoleucine AO353_05985 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) -1.4 Yes
L-Isoleucine AO353_05995 LysR family transcriptional regulator -1.2  
L-Isoleucine AO353_13340 amino acid ABC transporter substrate-binding protein -1.4 Yes
L-Isoleucine AO353_13345 branched-chain amino acid transporter permease subunit LivH -1.4 Yes
L-Isoleucine AO353_13350 branched-chain amino acid ABC transporter permease -1.6 Yes
L-Isoleucine AO353_13355 ABC transporter ATP-binding protein -1.5 Yes
L-Isoleucine AO353_17105 ABC transporter ATP-binding protein -3.2 Yes
L-Isoleucine AO353_17115 leucine/isoleucine/valine transporter permease subunit -1.5 Yes
L-Isoleucine AO353_17120 branched-chain amino acid transporter permease subunit LivH -1.5 Yes
L-Isoleucine AO353_17125 leucine ABC transporter substrate-binding protein -1.6 Yes
L-Isoleucine AO353_22345 ATPase -1.3  
L-Isoleucine AO353_25685 acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) (from data) -3.7 Yes
L-Isoleucine AO353_25695 AMP-binding protein -2.6 Yes
L-Isoleucine AO353_25705 AraC family transcriptional regulator -2.8 Yes
L-Isoleucine AO353_26630 ArsR family transcriptional regulator -3.1 Yes
L-Isoleucine AO353_26635 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) -3.1 Yes
L-Leucine AO353_00895 2-methylcitrate synthase -1.6 Yes
L-Leucine AO353_02580 Long-chain fatty acid transport protein -1.9  
L-Leucine AO353_07335 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) -1.5  
L-Leucine AO353_07340 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) -1.5  
L-Leucine AO353_07345 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) -1.3  
L-Leucine AO353_13005 channel protein TolC +1.4  
L-Leucine AO353_13340 amino acid ABC transporter substrate-binding protein -1.2 Yes
L-Leucine AO353_13350 branched-chain amino acid ABC transporter permease -1.0 Yes
L-Leucine AO353_16310 phosphoenolpyruvate carboxylase -2.3 Yes
L-Leucine AO353_17105 ABC transporter ATP-binding protein -1.9 Yes
L-Leucine AO353_17115 leucine/isoleucine/valine transporter permease subunit -1.6 Yes
L-Leucine AO353_17120 branched-chain amino acid transporter permease subunit LivH -1.6 Yes
L-Leucine AO353_17125 leucine ABC transporter substrate-binding protein -1.3 Yes
L-Leucine AO353_18220 isocitrate dehydrogenase -3.7 Yes
L-Leucine AO353_20350 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) -3.4 Yes
L-Leucine AO353_23610 serine/threonine protein phosphatase -1.7 Yes
L-Leucine AO353_23630 aminopeptidase -1.1  
L-Leucine AO353_26635 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) -3.1 Yes
L-Leucine AO353_28990 LOG family protein -1.7  
L-Malic acid disodium salt monohydrate AO353_02800 C4-dicarboxylate transporter -2.6 Yes
L-Malic acid disodium salt monohydrate AO353_11860 Fis family transcriptional regulator -2.1 Yes
L-Malic acid disodium salt monohydrate AO353_11865 ATPase -1.7 Yes
L-Ornithine AO353_00910 ATP-dependent zinc protease +1.1  
L-Ornithine AO353_01210 GntR family transcriptional regulator -2.4  
L-Ornithine AO353_02135 hypothetical protein -1.3  
L-Ornithine AO353_03085 phospholipase +1.1  
L-Ornithine AO353_03465 arginine-ornithine antiporter +3.1 Yes
L-Ornithine AO353_03470 arginine deiminase +3.5  
L-Ornithine AO353_03635 mechanosensitive ion channel protein MscS +1.3  
L-Ornithine AO353_04360 protein-disulfide isomerase +2.2  
L-Ornithine AO353_04865 hypothetical protein +7.8  
L-Ornithine AO353_04870 AraC family transcriptional regulator +7.4  
L-Ornithine AO353_06515 hypothetical protein +2.4  
L-Ornithine AO353_06735 thioredoxin +2.0  
L-Ornithine AO353_07190 S-adenosylmethionine decarboxylase proenzyme -1.2  
L-Ornithine AO353_07265 spermidine/putrescine ABC transporter ATP-binding protein +2.6  
L-Ornithine AO353_08595 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) +4.6  
L-Ornithine AO353_08680 porin -1.1  
L-Ornithine AO353_09065 hypothetical protein variable Yes
L-Ornithine AO353_09585 Hcp1 family type VI secretion system effector +1.1  
L-Ornithine AO353_09700 hypothetical protein -1.8  
L-Ornithine AO353_12810 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) -1.8 Yes
L-Ornithine AO353_13025 ADP-ribose pyrophosphatase +1.3  
L-Ornithine AO353_13930 Killer protein variable  
L-Ornithine AO353_14010 GntR family transcriptional regulator variable  
L-Ornithine AO353_14460 competence protein TfoX +1.4  
L-Ornithine AO353_21620 peptidylprolyl isomerase +2.3  
L-Ornithine AO353_24805 TetR family transcriptional regulator -1.7  
L-Ornithine AO353_25175 AsnC family transcriptional regulator -2.0  
L-Ornithine AO353_25185 ornithine cyclodeaminase -1.6 Yes
L-Ornithine AO353_25190 amino acid transporter -1.5  
L-Ornithine AO353_25630 arginine N-succinyltransferase -3.5  
L-Ornithine AO353_25635 citrulline utilization hydrolase (from data) -2.3 Yes
L-Ornithine AO353_25645 amino acid transporter +5.6 Yes
L-Ornithine AO353_25650 amino acid ABC transporter permease +5.8  
L-Ornithine AO353_25655 amino acid ABC transporter permease +6.1  
L-Ornithine AO353_25660 ABC transporter substrate-binding protein +7.1  
L-Ornithine AO353_25900 mannitol dehydrogenase +1.2  
L-Ornithine AO353_29185 TetR family transcriptional regulator +1.5  
L-Phenylalanine AO353_15550 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) -3.8 Yes
L-Phenylalanine AO353_18575 tyrosine aminotransferase (EC 2.6.1.57) (from data) -3.2 Yes
L-Phenylalanine AO353_18585 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) -3.6 Yes
L-Phenylalanine AO353_18590 AAA family ATPase -3.3 Yes
L-Phenylalanine AO353_20545 excinuclease ABC subunit B -1.2  
L-Phenylalanine AO353_26925 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) -3.8 Yes
L-Proline AO353_12810 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) -3.9 Yes
L-Proline AO353_13350 branched-chain amino acid ABC transporter permease -1.1 Yes
L-Serine AO353_03510 glycine cleavage system protein T +4.8  
L-Serine AO353_07335 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) +2.5  
L-Serine AO353_07340 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) +2.6  
L-Serine AO353_07345 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) +2.5  
L-Serine AO353_13005 channel protein TolC +1.5  
L-Serine AO353_14225 laccase +1.2  
L-Serine AO353_15500 L-serine ammonia-lyase (EC 4.3.1.17) (from data) -2.6  
L-Serine AO353_15505 LysR family transcriptional regulator -2.3  
L-Serine AO353_17475 hypothetical protein +1.9  
L-Tryptophan AO353_02580 Long-chain fatty acid transport protein -1.8  
L-Tryptophan AO353_05935 Kynureninase (EC 3.7.1.3) (from data) -2.8 Yes
L-Tryptophan AO353_05940 AsnC family transcriptional regulator -2.6 Yes
L-Tryptophan AO353_05950 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) -1.4 Yes
L-Tryptophan AO353_05955 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) -1.8 Yes
L-Tryptophan AO353_05960 anthranilate dioxygenase reductase -1.4 Yes
L-Tryptophan AO353_05970 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) -3.0 Yes
L-Tryptophan AO353_05975 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) -3.3 Yes
L-Tryptophan AO353_05980 cupin -2.5  
L-Tryptophan AO353_09160 AsnC family transcriptional regulator -2.6 Yes
L-Tryptophan AO353_17195 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) -2.4 Yes
L-Tryptophan AO353_17200 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data) -2.5 Yes
L-Tryptophan AO353_17230 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) (from data) -3.0  
L-Tryptophan AO353_22355 multidrug ABC transporter permease -2.1  
L-Tryptophan AO353_22385 dehydrogenase -1.6  
L-Tryptophan AO353_23525 Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data) -2.5 Yes
L-Tryptophan AO353_28990 LOG family protein -1.6  
L-Valine AO353_00895 2-methylcitrate synthase -3.5 Yes
L-Valine AO353_02580 Long-chain fatty acid transport protein -1.9  
L-Valine AO353_05985 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) -3.7 Yes
L-Valine AO353_05990 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) -3.5 Yes
L-Valine AO353_05995 LysR family transcriptional regulator -3.6 Yes
L-Valine AO353_07205 lipoate--protein ligase -2.6 Yes
L-Valine AO353_08560 spermidine/putrescine ABC transporter permease -1.8  
L-Valine AO353_08735 glycine cleavage system protein T -1.4  
L-Valine AO353_09955 sodium:alanine symporter +1.3 Yes
L-Valine AO353_11100 acyl-CoA dehydrogenase -1.0 Yes
L-Valine AO353_11105 CoA-transferase -1.1 Yes
L-Valine AO353_11685 serine acetyltransferase -2.5  
L-Valine AO353_16310 phosphoenolpyruvate carboxylase -2.0  
L-Valine AO353_20225 1-aminocyclopropane-1-carboxylate deaminase -2.2 Yes
L-Valine AO353_20350 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) -1.5 Yes
L-Valine AO353_25665 3-hydroxy-isobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) -3.6 Yes
L-Valine AO353_25670 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) -3.4 Yes
L-Valine AO353_25695 AMP-binding protein -1.8  
L-Valine AO353_25705 AraC family transcriptional regulator -1.7  
L-Valine AO353_25960 threonine dehydratase -1.9 Yes
L-Valine AO353_26630 ArsR family transcriptional regulator -3.4 Yes
Potassium acetate AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase -1.5  
Potassium acetate AO353_01040 polyhydroxyalkanoate synthesis regulator +1.1  
Potassium acetate AO353_01050 poly(3-hydroxyalkanoate) synthetase +2.0  
Potassium acetate AO353_02165 FAD-dependent cmnm(5)s(2)U34 oxidoreductase -1.3  
Potassium acetate AO353_03310 long-chain fatty acid--CoA ligase +1.7  
Potassium acetate AO353_05055 peptidylprolyl isomerase +1.3  
Potassium acetate AO353_05490 transcriptional regulator +1.5  
Potassium acetate AO353_05695 transcriptional regulator PdhR -2.0  
Potassium acetate AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -2.3 Yes
Potassium acetate AO353_07180 zinc-binding protein -1.4 Yes
Potassium acetate AO353_07340 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) -1.1  
Potassium acetate AO353_07470 acetylornithine aminotransferase -2.0 Yes
Potassium acetate AO353_07475 sulfurase -3.1  
Potassium acetate AO353_07480 LysR family transcriptional regulator -2.8  
Potassium acetate AO353_08455 hypothetical protein +2.4  
Potassium acetate AO353_08575 ABC transporter substrate-binding protein +2.8  
Potassium acetate AO353_08580 spermidine/putrescine ABC transporter substrate-binding protein -1.5  
Potassium acetate AO353_08590 glutamine synthetase -2.3  
Potassium acetate AO353_08595 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) -2.3  
Potassium acetate AO353_10810 radical SAM protein +4.1  
Potassium acetate AO353_10815 carbonate dehydratase -3.9 Yes
Potassium acetate AO353_11075 acetyl-CoA hydrolase -2.7 Yes
Potassium acetate AO353_11860 Fis family transcriptional regulator +1.5  
Potassium acetate AO353_13570 TonB-dependent receptor +1.4  
Potassium acetate AO353_15510 ribosomal subunit interface protein +2.1  
Potassium acetate AO353_16310 phosphoenolpyruvate carboxylase -2.9  
Potassium acetate AO353_16800 damage-inducible protein CinA +1.1  
Potassium acetate AO353_16815 cytochrome D ubiquinol oxidase subunit II -1.1  
Potassium acetate AO353_18990 transcription elongation factor GreB -1.3  
Potassium acetate AO353_23610 serine/threonine protein phosphatase -2.8 Yes
Potassium acetate AO353_25580 LysR family transcriptional regulator -1.7  
Potassium acetate AO353_26640 2-oxoisovalerate dehydrogenase -1.6  
Potassium acetate AO353_27690 isocitrate dehydrogenase +1.3  
Potassium acetate AO353_28035 hypothetical protein -2.3  
Putrescine Dihydrochloride AO353_02580 Long-chain fatty acid transport protein -1.5  
Putrescine Dihydrochloride AO353_08565 spermidine/putrescine ABC transporter permease -3.2 Yes
Putrescine Dihydrochloride AO353_08570 transporter -3.8 Yes
Putrescine Dihydrochloride AO353_08580 spermidine/putrescine ABC transporter substrate-binding protein -4.0 Yes
Putrescine Dihydrochloride AO353_08585 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) -2.0 Yes
Putrescine Dihydrochloride AO353_08590 glutamine synthetase -2.5 Yes
Putrescine Dihydrochloride AO353_09160 AsnC family transcriptional regulator -1.1 Yes
Putrescine Dihydrochloride AO353_11505 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) -3.5 Yes
Putrescine Dihydrochloride AO353_22355 multidrug ABC transporter permease -1.5 Yes
Putrescine Dihydrochloride AO353_22380 amino acid ABC transporter substrate-binding protein -1.2 Yes
Putrescine Dihydrochloride AO353_29305 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) -3.7 Yes
Putrescine Dihydrochloride AO353_29310 transporter -3.6  
Putrescine Dihydrochloride AO353_29315 spermidine/putrescine ABC transporter permease -4.0 Yes
Putrescine Dihydrochloride AO353_29320 putrescine ABC transporter, permease component (from data) -3.8  
Sodium D,L-Lactate AO353_05700 L-lactate permease -3.5 Yes
Sodium D,L-Lactate AO353_05705 oxidoreductase -4.4 Yes
Sodium D,L-Lactate AO353_05710 (Fe-S)-binding protein -3.6 Yes
Sodium D,L-Lactate AO353_05715 lactate utilization protein B/C -4.4 Yes
Sodium D-Lactate AO353_02140 BolA family transcriptional regulator -2.6 Yes
Sodium D-Lactate AO353_05700 L-lactate permease -4.3 Yes
Sodium D-Lactate AO353_05705 oxidoreductase -5.1 Yes
Sodium D-Lactate AO353_05710 (Fe-S)-binding protein -3.8 Yes
Sodium D-Lactate AO353_05715 lactate utilization protein B/C -4.6 Yes
Sodium D-Lactate AO353_05720 4Fe-4S ferredoxin -4.1 Yes
Sodium D-Lactate AO353_06515 hypothetical protein -4.2 Yes
Sodium D-Lactate AO353_06520 murein hydrolase transporter LrgA -3.2 Yes
Sodium D-Lactate AO353_10905 zinc ABC transporter ATP-binding protein -1.4 Yes
Sodium D-Lactate AO353_13690 thiol:disulfide interchange protein -1.4  
Sodium Fumarate dibasic AO353_02800 C4-dicarboxylate transporter -3.6 Yes
Sodium Fumarate dibasic AO353_11860 Fis family transcriptional regulator -3.5 Yes
Sodium Fumarate dibasic AO353_11865 ATPase -1.7 Yes
Sodium L-Lactate AO353_02140 BolA family transcriptional regulator -1.5 Yes
Sodium L-Lactate AO353_05700 L-lactate permease -3.4 Yes
Sodium L-Lactate AO353_05705 oxidoreductase -4.7 Yes
Sodium L-Lactate AO353_05710 (Fe-S)-binding protein -3.5 Yes
Sodium L-Lactate AO353_05715 lactate utilization protein B/C -4.3 Yes
Sodium butyrate AO353_01300 proteophosphoglycan precursor -2.3 Yes
Sodium butyrate AO353_01315 TetR family transcriptional regulator +3.3 Yes
Sodium butyrate AO353_01495 cysteine protease +1.1  
Sodium butyrate AO353_07485 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) -3.7 Yes
Sodium butyrate AO353_07490 diguanylate cyclase +1.6 Yes
Sodium butyrate AO353_09840 chorismate--pyruvate lyase -1.8  
Sodium butyrate AO353_10215 methyltransferase -1.1  
Sodium butyrate AO353_13005 channel protein TolC +2.7  
Sodium butyrate AO353_15010 long-chain fatty acid--CoA ligase +1.1  
Sodium butyrate AO353_15015 adhesin -1.2  
Sodium butyrate AO353_15020 hypothetical protein -1.0 Yes
Sodium butyrate AO353_16310 phosphoenolpyruvate carboxylase -2.5  
Sodium butyrate AO353_16360 RND transporter +1.9  
Sodium butyrate AO353_16365 multidrug transporter AcrB +1.7  
Sodium butyrate AO353_18010 hypothetical protein -1.0 Yes
Sodium butyrate AO353_21050 hypothetical protein +1.4  
Sodium butyrate AO353_21060 RND transporter +1.3  
Sodium butyrate AO353_25680 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) (from data) -2.6  
Sodium butyrate AO353_25685 acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) (from data) -2.7  
Sodium butyrate AO353_25695 AMP-binding protein -2.5  
Sodium propionate AO353_00440 hypothetical protein +1.4  
Sodium propionate AO353_00765 D-alanyl-D-alanine carboxypeptidase +1.8  
Sodium propionate AO353_00820 uroporphyrin-III methyltransferase -1.6  
Sodium propionate AO353_00845 CmaX protein -1.7  
Sodium propionate AO353_01225 ABC transporter substrate-binding protein +1.0  
Sodium propionate AO353_01345 aminodeoxychorismate lyase +1.8  
Sodium propionate AO353_02135 hypothetical protein +1.4 Yes
Sodium propionate AO353_03065 hypothetical protein -1.4 Yes
Sodium propionate AO353_04845 LysR family transcriptional regulator +4.6 Yes
Sodium propionate AO353_06430 murein transglycosylase +1.3  
Sodium propionate AO353_06530 peptidase C13 -1.2  
Sodium propionate AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -2.9  
Sodium propionate AO353_07255 polyamine ABC transporter substrate-binding protein +1.6  
Sodium propionate AO353_08705 hypothetical protein +1.0  
Sodium propionate AO353_08760 Xaa-Pro aminopeptidase +1.4  
Sodium propionate AO353_08770 hypothetical protein -2.5 Yes
Sodium propionate AO353_08955 transcriptional regulator +2.1  
Sodium propionate AO353_10215 methyltransferase -2.3  
Sodium propionate AO353_10255 ABC transporter +1.4  
Sodium propionate AO353_10260 sugar ABC transporter ATP-binding protein +1.4  
Sodium propionate AO353_10270 glycosyl transferase +1.9  
Sodium propionate AO353_10450 hypothetical protein +1.5  
Sodium propionate AO353_10965 N-acetylmuramoyl-L-alanine amidase +1.4 Yes
Sodium propionate AO353_10995 hypothetical protein -1.5 Yes
Sodium propionate AO353_11075 acetyl-CoA hydrolase -1.4 Yes
Sodium propionate AO353_12055 cell envelope biogenesis protein AsmA -1.9  
Sodium propionate AO353_12305 D-tyrosyl-tRNA(Tyr) deacylase +1.8  
Sodium propionate AO353_13020 hypothetical protein -1.5  
Sodium propionate AO353_16110 glycosyl transferase family 51 -2.1 Yes
Sodium propionate AO353_16310 phosphoenolpyruvate carboxylase -2.1 Yes
Sodium propionate AO353_16825 hypothetical protein -1.9  
Sodium propionate AO353_17065 hypothetical protein -1.0  
Sodium propionate AO353_17375 beta-D-glucoside glucohydrolase -1.4  
Sodium propionate AO353_17810 LysR family transcriptional regulator -1.6  
Sodium propionate AO353_18990 transcription elongation factor GreB -1.4  
Sodium propionate AO353_20850 hypothetical protein -2.3  
Sodium propionate AO353_21270 anti-sigma factor +1.9  
Sodium propionate AO353_22585 HxlR family transcriptional regulator -2.6  
Sodium propionate AO353_22785 peptidase -1.4  
Sodium propionate AO353_23765 4-alpha-glucanotransferase -1.0  
Sodium propionate AO353_25500 phosphoglycerate mutase +2.4  
Sodium propionate AO353_25835 6-phosphogluconate dehydrogenase +1.6  
Sodium propionate AO353_25960 threonine dehydratase -1.4  
Sodium propionate AO353_27080 hypothetical protein +1.6  
Sodium pyruvate AO353_01870 hypothetical protein -1.1 Yes
Sodium pyruvate AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase +1.6  
Sodium pyruvate AO353_11170 hypothetical protein +1.5 Yes
Sodium pyruvate AO353_16110 glycosyl transferase family 51 +1.2  
Sodium pyruvate AO353_25245 regulator -2.4 Yes
Sodium pyruvate AO353_25250 histidine kinase -1.3 Yes
Sodium pyruvate AO353_25255 large subunit of pyruvate transporter (CstA) (from data) -2.7 Yes
Sodium succinate dibasic hexahydrate AO353_02800 C4-dicarboxylate transporter -3.1 Yes
Sodium succinate dibasic hexahydrate AO353_11860 Fis family transcriptional regulator -3.1 Yes
Trisodium citrate dihydrate AO353_03975 peptidase -1.3 Yes
Trisodium citrate dihydrate AO353_03980 thiol oxidoreductase -1.6 Yes
Trisodium citrate dihydrate AO353_08420 ATPase P -3.6 Yes
Trisodium citrate dihydrate AO353_08425 Cd(II)/Pb(II)-responsive transcriptional regulator -4.3 Yes
Trisodium citrate dihydrate AO353_11040 citrate transporter -1.2 Yes
Trisodium citrate dihydrate AO353_16005 copper oxidase -1.3 Yes
Trisodium citrate dihydrate AO353_17570 tripartite tricarboxylate transporter TctA -4.0 Yes
Trisodium citrate dihydrate AO353_17575 hypothetical protein -4.0 Yes
Trisodium citrate dihydrate AO353_17580 tricarboxylic transporter -3.4 Yes
Trisodium citrate dihydrate AO353_17585 porin -2.8 Yes
Trisodium citrate dihydrate AO353_17590 transcriptional regulator -4.3 Yes
Trisodium citrate dihydrate AO353_17595 histidine kinase -3.9 Yes
Trisodium citrate dihydrate AO353_22345 ATPase -1.8  
Trisodium citrate dihydrate AO353_26685 cobalt efflux pump (from data) -5.2 Yes
Tween 20 AO353_01315 TetR family transcriptional regulator -1.3  
Tween 20 AO353_06515 hypothetical protein -3.7 Yes
Tween 20 AO353_06520 murein hydrolase transporter LrgA -3.0 Yes
Tween 20 AO353_07335 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) -1.1  
Tween 20 AO353_07340 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) -1.3  
Tween 20 AO353_07485 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) -1.8 Yes
Tween 20 AO353_11090 NADP transhydrogenase subunit alpha -1.5 Yes
Tween 20 AO353_12400 TetR family transcriptional regulator -2.1 Yes
Tween 20 AO353_13665 hypothetical protein -1.7  
Tween 20 AO353_18220 isocitrate dehydrogenase -3.0 Yes
Uridine AO353_06080 methylmalonate-semialdehyde dehydrogenase -1.7 Yes
Uridine AO353_06085 omega amino acid--pyruvate aminotransferase -1.1 Yes
Uridine AO353_06090 LysR family transcriptional regulator -1.2 Yes
Uridine AO353_20820 sugar ABC transporter ATP-binding protein -2.3 Yes
Uridine AO353_20825 ABC transporter permease -3.3 Yes
Uridine AO353_20830 LacI family transcriptional regulator -2.3  
Uridine AO353_20835 Ribokinase (EC 2.7.1.15) (from data) -3.0 Yes
a-Ketoglutaric acid disodium salt hydrate AO353_03800 cytochrome C biogenesis protein CcmE -3.4 Yes
a-Ketoglutaric acid disodium salt hydrate AO353_03805 C4-dicarboxylate ABC transporter -3.1 Yes
a-Ketoglutaric acid disodium salt hydrate AO353_03810 Alpha-ketoglutarate permease, MFS superfamily (from data) -4.3 Yes
a-Ketoglutaric acid disodium salt hydrate AO353_18660 AAA family ATPase +1.7  
casamino acids AO353_04200 TetR family transcriptional regulator +1.3  
m-Inositol AO353_03235 glutamate-pyruvate aminotransferase -1.7  
m-Inositol AO353_14055 ATP-dependent protease -1.2  
m-Inositol AO353_21335 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) -3.9 Yes
m-Inositol AO353_21340 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) -4.0 Yes
m-Inositol AO353_21345 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) -4.1 Yes
m-Inositol AO353_21360 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) -3.3 Yes
m-Inositol AO353_21365 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) -3.0 Yes
m-Inositol AO353_21380 rhizopine-binding protein -3.4 Yes
m-Inositol AO353_21385 m-Inositol ABC transporter, ATPase component (itaA) (from data) -3.6 Yes
m-Inositol AO353_21390 m-Inositol ABC transporter, permease component (iatP) (from data) -3.0 Yes
m-Inositol AO353_28990 LOG family protein -1.8