Specific Phenotypes for Pseudomonas fluorescens FW300-N1B4 in carbon source experiments

Condition Gene Description Fitness Cons.
Carnitine Hydrochloride Pf1N1B4_1652 transcriptional regulator, LysR family -1.4  
Carnitine Hydrochloride Pf1N1B4_1673 Formate dehydrogenase chain D (EC 1.2.1.2) -1.4  
Carnitine Hydrochloride Pf1N1B4_1820 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) -1.0 Yes
Carnitine Hydrochloride Pf1N1B4_2418 HTH-type transcriptional regulator BetI +1.6 Yes
Carnitine Hydrochloride Pf1N1B4_2420 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) -2.8 Yes
Carnitine Hydrochloride Pf1N1B4_2422 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) -2.6 Yes
Carnitine Hydrochloride Pf1N1B4_2423 L-serine dehydratase (EC 4.3.1.17) -1.1 Yes
Carnitine Hydrochloride Pf1N1B4_2425 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain -3.1 Yes
Carnitine Hydrochloride Pf1N1B4_2428 FIG143042: Thioesterase-like protein -3.5 Yes
Carnitine Hydrochloride Pf1N1B4_2430 FIG004891: hypothetical protein in carnitine cluster -3.4 Yes
Carnitine Hydrochloride Pf1N1B4_2438 FIG00953113: hypothetical protein -2.8 Yes
Carnitine Hydrochloride Pf1N1B4_2439 DgcA Dimethylglycine demethylase subunit A -2.5 Yes
Carnitine Hydrochloride Pf1N1B4_2440 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF -3.0 Yes
Carnitine Hydrochloride Pf1N1B4_2447 GbcA Glycine betaine demethylase subunit A -2.0 Yes
Carnitine Hydrochloride Pf1N1B4_2448 GbcB Glycine betaine demethylase subunit B -2.1 Yes
Carnitine Hydrochloride Pf1N1B4_2454 Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) -2.5 Yes
Carnitine Hydrochloride Pf1N1B4_2455 Sarcosine oxidase beta subunit (EC 1.5.3.1) -2.6 Yes
Carnitine Hydrochloride Pf1N1B4_2457 Sarcosine oxidase alpha subunit (EC 1.5.3.1) -2.5 Yes
Carnitine Hydrochloride Pf1N1B4_2503 Coenzyme PQQ synthesis protein F -1.6  
Carnitine Hydrochloride Pf1N1B4_2730 FIG00958173: hypothetical protein +1.1  
Carnitine Hydrochloride Pf1N1B4_3430 Acetyl-coenzyme A synthetase (EC 6.2.1.1) -2.2  
Carnitine Hydrochloride Pf1N1B4_3725 Sensory box histidine kinase/response regulator -2.0  
Carnitine Hydrochloride Pf1N1B4_4052 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) -1.7  
Cytidine Pf1N1B4_3430 Acetyl-coenzyme A synthetase (EC 6.2.1.1) -1.3  
D-Alanine Pf1N1B4_2143 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system -4.1 Yes
D-Alanine Pf1N1B4_801 D-serine/D-alanine/glycine transporter -2.7 Yes
D-Fructose Pf1N1B4_1144 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) -2.6 Yes
D-Fructose Pf1N1B4_1146 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) -3.3 Yes
D-Galactose Pf1N1B4_2540 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) -1.9  
D-Galactose Pf1N1B4_2541 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) -1.9  
D-Galactose Pf1N1B4_397 Hexuronate transporter -1.6 Yes
D-Galactose Pf1N1B4_398 Galactonate dehydratase (EC 4.2.1.6) -2.4 Yes
D-Galactose Pf1N1B4_410 ABC transporter for D-galactose/L-arabinose, ATPase component (from data) -2.3 Yes
D-Galactose Pf1N1B4_411 ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data) -2.3 Yes
D-Galactose Pf1N1B4_413 L-arabinolactonase (EC 3.1.1.15) (from data) -3.0 Yes
D-Galacturonic Acid monohydrate Pf1N1B4_1108 D-galactarate permease -1.7 Yes
D-Galacturonic Acid monohydrate Pf1N1B4_1109 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) (from data) -2.0 Yes
D-Galacturonic Acid monohydrate Pf1N1B4_1110 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) -2.3 Yes
D-Galacturonic Acid monohydrate Pf1N1B4_4511 D-galacturonate dehydrogenase (EC 1.1.1.203) (from data) -2.6 Yes
D-Galacturonic Acid monohydrate Pf1N1B4_5129 D-galacturonate transporter ExuT (from data) -1.8 Yes
D-Mannose Pf1N1B4_1684 Oxidoreductase, aldo/keto reductase family -1.4  
D-Mannose Pf1N1B4_4372 Galactitol utilization operon repressor +3.9 Yes
D-Mannose Pf1N1B4_4846 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) -3.0 Yes
D-Mannose Pf1N1B4_4850 Various polyols ABC transporter, periplasmic substrate-binding protein -1.6 Yes
D-Mannose Pf1N1B4_597 D-mannose isomerase (EC 5.3.1.7) (from data) -2.4 Yes
D-Ribose Pf1N1B4_3311 Tricarboxylate transport membrane protein TctA variable  
D-Ribose Pf1N1B4_3312 Tricarboxylate transport protein TctB variable  
D-Ribose Pf1N1B4_3314 Tricarboxylate porin OpdH variable  
D-Ribose Pf1N1B4_6031 Ribokinase (EC 2.7.1.15) (from data) -4.2 Yes
D-Ribose Pf1N1B4_6034 D-ribose ABC transporter, ATPase component RbsA (from data) -3.0 Yes
D-Trehalose dihydrate Pf1N1B4_3322 L-aspartate oxidase (EC 1.4.3.16) -1.7  
D-Trehalose dihydrate Pf1N1B4_527 Cytosine/purine/uracil/thiamine/allantoin permease family protein +1.0  
D-Trehalose dihydrate Pf1N1B4_833 PTS system, glucose-specific IIA component / Phosphotransferase system, phosphocarrier protein HPr / Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) -3.3 Yes
D-Trehalose dihydrate Pf1N1B4_834 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) -2.2 Yes
D-Trehalose dihydrate Pf1N1B4_836 PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69) -2.0 Yes
Glycerol Pf1N1B4_1186 L-lactate permease -2.1 Yes
Glycerol Pf1N1B4_1187 Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE -2.5 Yes
Glycerol Pf1N1B4_1188 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF -2.4 Yes
Glycerol Pf1N1B4_1190 Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing -2.5 Yes
Glycerol Pf1N1B4_2683 LrgA-associated membrane protein LrgB -2.0 Yes
Glycerol Pf1N1B4_3766 Uricase (urate oxidase) (EC 1.7.3.3) -1.7  
L-Alanine Pf1N1B4_2143 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system -3.3 Yes
L-Alanine Pf1N1B4_801 D-serine/D-alanine/glycine transporter -2.5 Yes
L-Arabinose Pf1N1B4_2540 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) -2.6  
L-Arabinose Pf1N1B4_2541 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) -2.4  
L-Arabinose Pf1N1B4_396 D-galactonate regulator, IclR family +1.7 Yes
L-Arabinose Pf1N1B4_410 ABC transporter for D-galactose/L-arabinose, ATPase component (from data) -2.8 Yes
L-Arabinose Pf1N1B4_411 ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data) -2.3 Yes
L-Arabinose Pf1N1B4_413 L-arabinolactonase (EC 3.1.1.15) (from data) -3.1 Yes
L-Arabinose Pf1N1B4_4273 Predicted transcriptional regulator of the myo-inositol catabolic operon +1.5  
L-Arabinose Pf1N1B4_4622 Nitrate/nitrite transporter -3.0 Yes
L-Arabinose Pf1N1B4_4623 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) -4.8 Yes
L-Arginine Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) -3.0 Yes
L-Arginine Pf1N1B4_2348 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR -1.5  
L-Arginine Pf1N1B4_3431 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) -3.0 Yes
L-Arginine Pf1N1B4_3432 ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) -2.9 Yes
L-Arginine Pf1N1B4_3433 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) -2.7 Yes
L-Arginine Pf1N1B4_3440 Succinylornithine transaminase (EC 2.6.1.81) (from data) -3.0 Yes
L-Arginine Pf1N1B4_3876 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) -1.8  
L-Arginine Pf1N1B4_4643 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form -2.8 Yes
L-Asparagine Pf1N1B4_2023 L-asparaginase (EC 3.5.1.1) (from data) -1.7 Yes
L-Asparagine Pf1N1B4_2024 sodium/alanine transporter -1.7 Yes
L-Asparagine Pf1N1B4_771 ABC transporter for L-asparagine and L-glutamate, periplasmic substrate-binding component (from data) -2.2 Yes
L-Asparagine Pf1N1B4_772 ABC transporter for L-asparagine and L-glutamate, permease component 1 (from data) -2.2 Yes
L-Asparagine Pf1N1B4_775 Signal transduction histidine kinase regulating C4-dicarboxylate transport system (EC 2.7.13.3) -1.6 Yes
L-Citrulline Pf1N1B4_3430 Acetyl-coenzyme A synthetase (EC 6.2.1.1) -1.5  
L-Citrulline Pf1N1B4_3431 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) -2.5  
L-Citrulline Pf1N1B4_3432 ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) -2.3  
L-Citrulline Pf1N1B4_3433 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) -2.3  
L-Citrulline Pf1N1B4_3437 Arginine pathway regulatory protein ArgR, repressor of arg regulon -3.0  
L-Citrulline Pf1N1B4_3440 Succinylornithine transaminase (EC 2.6.1.81) (from data) -3.3  
L-Citrulline Pf1N1B4_4643 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form -2.3  
L-Glutamic acid monopotassium salt monohydrate Pf1N1B4_1375 Mannose-6-phosphate isomerase (EC 5.3.1.8) -1.4 Yes
L-Glutamic acid monopotassium salt monohydrate Pf1N1B4_2348 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR -2.0  
L-Glutamic acid monopotassium salt monohydrate Pf1N1B4_3707 Cobyrinic acid A,C-diamide synthase -1.8  
L-Glutamic acid monopotassium salt monohydrate Pf1N1B4_775 Signal transduction histidine kinase regulating C4-dicarboxylate transport system (EC 2.7.13.3) -1.6 Yes
L-Histidine Pf1N1B4_1578 N-formylglutamate deformylase (EC 3.5.1.68) (from data) -2.8 Yes
L-Histidine Pf1N1B4_1580 Histidine transport protein (permease) -2.9 Yes
L-Histidine Pf1N1B4_1582 Histidine ammonia-lyase (EC 4.3.1.3) (from data) -1.3 Yes
L-Histidine Pf1N1B4_1585 Histidine ABC transporter, histidine-binding protein (TC 3.A.1) -2.7 Yes
L-Histidine Pf1N1B4_1586 Purine-cytosine permease -1.9 Yes
L-Histidine Pf1N1B4_1587 Urocanate hydratase (EC 4.2.1.49) (from data) -3.1 Yes
L-Histidine Pf1N1B4_1588 hypothetical protein -3.2  
L-Histidine Pf1N1B4_1591 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) -2.7 Yes
L-Histidine Pf1N1B4_1673 Formate dehydrogenase chain D (EC 1.2.1.2) -1.2 Yes
L-Histidine Pf1N1B4_1674 Putative formate dehydrogenase oxidoreductase protein -1.0 Yes
L-Histidine Pf1N1B4_1832 Glycine cleavage system transcriptional activator -1.8 Yes
L-Isoleucine Pf1N1B4_1379 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) -1.4 Yes
L-Isoleucine Pf1N1B4_1380 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) -1.2 Yes
L-Isoleucine Pf1N1B4_1381 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) -1.5 Yes
L-Isoleucine Pf1N1B4_1382 Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1) -1.4 Yes
L-Isoleucine Pf1N1B4_1489 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) +1.1 Yes
L-Isoleucine Pf1N1B4_3820 2-methylcitrate synthase (EC 2.3.3.5) -3.1 Yes
L-Leucine Pf1N1B4_1378 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) -2.0 Yes
L-Leucine Pf1N1B4_1379 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) -1.7 Yes
L-Leucine Pf1N1B4_1380 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) -1.5 Yes
L-Leucine Pf1N1B4_1381 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) -1.7 Yes
L-Leucine Pf1N1B4_1382 Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1) -1.3 Yes
L-Leucine Pf1N1B4_1489 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) +1.1 Yes
L-Leucine Pf1N1B4_2740 Acyl-CoA thioesterase II (EC 3.1.2.-) -2.0  
L-Leucine Pf1N1B4_2896 L-Proline/Glycine betaine transporter ProP -1.5 Yes
L-Leucine Pf1N1B4_3051 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) -1.7 Yes
L-Leucine Pf1N1B4_3216 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) -1.4 Yes
L-Leucine Pf1N1B4_3218 High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) -1.6 Yes
L-Leucine Pf1N1B4_3430 Acetyl-coenzyme A synthetase (EC 6.2.1.1) -1.9  
L-Leucine Pf1N1B4_386 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) +1.2 Yes
L-Leucine Pf1N1B4_3984 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) -2.3 Yes
L-Leucine Pf1N1B4_4643 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form -1.9 Yes
L-Leucine Pf1N1B4_978 Predicted ATPase related to phosphate starvation-inducible protein PhoH -1.7  
L-Valine Pf1N1B4_1183 Sodium-dependent transporter family protein +1.3  
L-Valine Pf1N1B4_1229 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) -2.7 Yes
L-Valine Pf1N1B4_2024 sodium/alanine transporter +1.0 Yes
L-Valine Pf1N1B4_2550 Lipoate-protein ligase A -3.6 Yes
L-Valine Pf1N1B4_3820 2-methylcitrate synthase (EC 2.3.3.5) -3.2 Yes
L-Valine Pf1N1B4_3888 Aconitate hydratase (EC 4.2.1.3) -1.7  
L-Valine Pf1N1B4_3984 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) -1.7 Yes
L-Valine Pf1N1B4_4643 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form -1.3  
L-Valine Pf1N1B4_4790 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) -3.4 Yes
Potassium acetate Pf1N1B4_1000 Inner membrane component of tripartite multidrug resistance system +1.8 Yes
Potassium acetate Pf1N1B4_1001 Outer membrane component of tripartite multidrug resistance system +1.9 Yes
Potassium acetate Pf1N1B4_1002 LysR family transcriptional regulator QseA +1.3 Yes
Potassium acetate Pf1N1B4_1821 Acetyl-CoA hydrolase (EC 3.1.2.1) -1.2 Yes
Potassium acetate Pf1N1B4_1849 Carbonic anhydrase (EC 4.2.1.1) -2.2 Yes
Potassium acetate Pf1N1B4_2554 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) -2.5 Yes
Potassium acetate Pf1N1B4_3430 Acetyl-coenzyme A synthetase (EC 6.2.1.1) -2.4 Yes
Potassium acetate Pf1N1B4_3725 Sensory box histidine kinase/response regulator -2.5  
Potassium acetate Pf1N1B4_3726 Sensory box histidine kinase/response regulator -3.1  
Potassium acetate Pf1N1B4_998 Membrane fusion component of tripartite multidrug resistance system +2.1 Yes
Potassium acetate Pf1N1B4_999 Na+-dependent transporters of the SNF family +1.5 Yes
Putrescine Dihydrochloride Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) -2.3 Yes
Putrescine Dihydrochloride Pf1N1B4_1734 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) -2.3 Yes
Putrescine Dihydrochloride Pf1N1B4_2143 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system -1.5 Yes
Putrescine Dihydrochloride Pf1N1B4_2254 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) -2.4 Yes
Putrescine Dihydrochloride Pf1N1B4_2348 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR -1.4  
Putrescine Dihydrochloride Pf1N1B4_3322 L-aspartate oxidase (EC 1.4.3.16) -1.8  
Putrescine Dihydrochloride Pf1N1B4_4351 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) -1.9 Yes
Sodium D,L-Lactate Pf1N1B4_1186 L-lactate permease -2.5 Yes
Sodium D,L-Lactate Pf1N1B4_1187 Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE -2.6 Yes
Sodium D,L-Lactate Pf1N1B4_1188 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF -3.0 Yes
Sodium D,L-Lactate Pf1N1B4_1190 Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing -1.5 Yes
Sodium D-Lactate Pf1N1B4_1186 L-lactate permease -2.9 Yes
Sodium D-Lactate Pf1N1B4_1187 Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE -2.6 Yes
Sodium D-Lactate Pf1N1B4_1188 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF -3.2 Yes
Sodium D-Lactate Pf1N1B4_1190 Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing -3.0 Yes
Sodium D-Lactate Pf1N1B4_2683 LrgA-associated membrane protein LrgB -3.1 Yes
Sodium D-Lactate Pf1N1B4_3311 Tricarboxylate transport membrane protein TctA +2.3  
Sodium D-Lactate Pf1N1B4_3312 Tricarboxylate transport protein TctB variable  
Sodium D-Lactate Pf1N1B4_3314 Tricarboxylate porin OpdH variable  
Sodium D-Lactate Pf1N1B4_3876 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) -1.8  
Sodium Fumarate dibasic Pf1N1B4_1666 C4-dicarboxylate transport transcriptional regulatory protein -1.9 Yes
Sodium Fumarate dibasic Pf1N1B4_3311 Tricarboxylate transport membrane protein TctA +3.9  
Sodium Fumarate dibasic Pf1N1B4_3312 Tricarboxylate transport protein TctB +4.3  
Sodium Fumarate dibasic Pf1N1B4_3314 Tricarboxylate porin OpdH +2.5  
Sodium Fumarate dibasic Pf1N1B4_3487 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate -2.1 Yes
Sodium L-Lactate Pf1N1B4_1186 L-lactate permease -2.7 Yes
Sodium L-Lactate Pf1N1B4_1187 Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE -2.1 Yes
Sodium L-Lactate Pf1N1B4_1188 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF -3.5 Yes
Sodium butyrate Pf1N1B4_1000 Inner membrane component of tripartite multidrug resistance system +1.4  
Sodium butyrate Pf1N1B4_1001 Outer membrane component of tripartite multidrug resistance system +1.2  
Sodium butyrate Pf1N1B4_1002 LysR family transcriptional regulator QseA +1.6 Yes
Sodium butyrate Pf1N1B4_2496 Acyl-CoA dehydrogenase (EC 1.3.8.7) -2.8 Yes
Sodium butyrate Pf1N1B4_998 Membrane fusion component of tripartite multidrug resistance system +1.9  
Sodium octanoate Pf1N1B4_1142 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB -1.7  
Sodium octanoate Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) -1.7  
Sodium octanoate Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG -1.4  
Sodium octanoate Pf1N1B4_1445 lipoprotein, putative -1.3 Yes
Sodium octanoate Pf1N1B4_1536 DamX, an inner membrane protein involved in bile resistance -1.2  
Sodium octanoate Pf1N1B4_2111 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) -1.3  
Sodium octanoate Pf1N1B4_2206 FIG139438: lipoprotein B +1.4  
Sodium octanoate Pf1N1B4_2255 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) -1.3  
Sodium octanoate Pf1N1B4_2496 Acyl-CoA dehydrogenase (EC 1.3.8.7) -3.2 Yes
Sodium octanoate Pf1N1B4_2617 Membrane protein with DUF350 domain -1.2  
Sodium octanoate Pf1N1B4_2681 MaoC-like domain protein +1.6  
Sodium octanoate Pf1N1B4_293 hypothetical protein -1.6  
Sodium octanoate Pf1N1B4_3113 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) -2.3  
Sodium octanoate Pf1N1B4_3147 Putative NADPH-quinone reductase (modulator of drug activity B) -2.6  
Sodium octanoate Pf1N1B4_3322 L-aspartate oxidase (EC 1.4.3.16) -2.3  
Sodium octanoate Pf1N1B4_3329 Putative permease PerM (= YfgO) -1.7 Yes
Sodium octanoate Pf1N1B4_3389 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) -2.3  
Sodium octanoate Pf1N1B4_3589 N-acetylneuraminate synthase (EC 2.5.1.56) -1.1  
Sodium octanoate Pf1N1B4_3696 FIG00955360: hypothetical protein -3.0  
Sodium octanoate Pf1N1B4_3824 FIG137360: hypothetical protein -1.5 Yes
Sodium octanoate Pf1N1B4_3827 Esterase/lipase/thioesterase family protein -1.4 Yes
Sodium octanoate Pf1N1B4_3829 Magnesium and cobalt transport protein CorA -1.9  
Sodium octanoate Pf1N1B4_389 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) -2.1 Yes
Sodium octanoate Pf1N1B4_4643 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form -2.4 Yes
Sodium octanoate Pf1N1B4_4750 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO -1.8 Yes
Sodium octanoate Pf1N1B4_5661 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) -1.9  
Sodium octanoate Pf1N1B4_573 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) -1.5  
Sodium octanoate Pf1N1B4_579 Membrane fusion component of tripartite multidrug resistance system -1.5 Yes
Sodium octanoate Pf1N1B4_723 two-component system sensor protein -2.7  
Sodium pyruvate Pf1N1B4_3673 large component of pyruvate transporter (actP-like) (from data) -1.6 Yes
Sodium pyruvate Pf1N1B4_3725 Sensory box histidine kinase/response regulator -1.8  
Sucrose Pf1N1B4_1142 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB variable  
Sucrose Pf1N1B4_1212 Predicted flavin reductase RutF in novel pyrimidine catabolism pathway variable  
Sucrose Pf1N1B4_1217 RND multidrug efflux transporter; Acriflavin resistance protein -1.5  
Sucrose Pf1N1B4_1218 Probable Co/Zn/Cd efflux system membrane fusion protein -1.2  
Sucrose Pf1N1B4_1226 FIG01201438: hypothetical protein variable  
Sucrose Pf1N1B4_1868 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) +1.3  
Sucrose Pf1N1B4_2031 Aldose 1-epimerase -1.4 Yes
Sucrose Pf1N1B4_2170 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase -1.8  
Sucrose Pf1N1B4_2410 FIG00956403: hypothetical protein variable  
Sucrose Pf1N1B4_2521 FIG004684: SpoVR-like protein -1.9  
Sucrose Pf1N1B4_2522 FIG002076: hypothetical protein variable  
Sucrose Pf1N1B4_2523 Serine protein kinase (prkA protein), P-loop containing variable  
Sucrose Pf1N1B4_2544 Phosphoglycolate phosphatase (EC 3.1.3.18) variable  
Sucrose Pf1N1B4_2714 FOG: TPR repeat, SEL1 subfamily variable  
Sucrose Pf1N1B4_2719 Sensor histidine kinase variable  
Sucrose Pf1N1B4_3073 probable glucosyl transferase -2.6  
Sucrose Pf1N1B4_3195 hydrolase, putative -2.1  
Sucrose Pf1N1B4_3363 Siderophore synthetase superfamily, group A @ Siderophore synthetase large component, acetyltransferase -2.9  
Sucrose Pf1N1B4_3387 Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) variable  
Sucrose Pf1N1B4_4614 Membrane alanine aminopeptidase N (EC 3.4.11.2) variable  
Sucrose Pf1N1B4_4848 Various polyols ABC transporter, permease component 2 variable  
Sucrose Pf1N1B4_5111 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) variable Yes
Sucrose Pf1N1B4_5116 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) -4.4 Yes
Tween 20 Pf1N1B4_2496 Acyl-CoA dehydrogenase (EC 1.3.8.7) -2.3 Yes
Tween 20 Pf1N1B4_2960 FIG002188: hypothetical protein -2.7 Yes
Tween 20 Pf1N1B4_2961 Transcriptional regulator, LuxR family -1.5 Yes
Tween 20 Pf1N1B4_3387 Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) -1.7 Yes
Tween 20 Pf1N1B4_3479 Sensor histidine kinase -1.6 Yes
Tween 20 Pf1N1B4_4616 FIG005548: transport protein -2.0 Yes
Tween 20 Pf1N1B4_978 Predicted ATPase related to phosphate starvation-inducible protein PhoH -1.4  
Uridine Pf1N1B4_1239 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) -1.6 Yes
Uridine Pf1N1B4_1240 LysR family transcriptional regulator PA0133 -1.3 Yes
Uridine Pf1N1B4_3430 Acetyl-coenzyme A synthetase (EC 6.2.1.1) -1.3  
Uridine Pf1N1B4_4501 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) -1.2  
a-Ketoglutaric acid disodium salt hydrate Pf1N1B4_684 C4-dicarboxylate transport sensor protein -2.9 Yes
a-Ketoglutaric acid disodium salt hydrate Pf1N1B4_686 Dicarboxylate MFS transporter -2.9 Yes
m-Inositol Pf1N1B4_4279 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) -2.3 Yes
m-Inositol Pf1N1B4_4286 Inositol transport system ATP-binding protein -2.4 Yes