Specific Phenotypes for Pseudomonas stutzeri RCH2 in carbon source experiments

Condition Gene Description Fitness Cons.
Psest_0120 hypothetical protein -1.6  
Psest_0263 PAS domain S-box/diguanylate cyclase (GGDEF) domain -1.2  
Psest_2793 hypothetical protein +1.4  
Psest_3918 hypothetical protein -1.1  
Psest_4250 hypothetical protein -1.2  
Psest_4297 PAS domain S-box -1.4  
D-Alanine Psest_0347 large component of pyruvate/D-alanine transporter (actP-like) (from data) -5.2  
D-Alanine Psest_0348 hypothetical protein -1.8  
D-Alanine Psest_0349 DNA polymerase III, alpha subunit (gram-positive type) -2.6  
D-Alanine Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) -5.4 Yes
D-Alanine Psest_3794 Transcriptional regulators -6.6 Yes
D-Fructose Psest_1627 Superfamily II DNA and RNA helicases -2.2  
D-Fructose Psest_1810 UDP-N-acetylglucosamine 4,6-dehydratase +1.5  
D-Fructose Psest_1900 Maltoporin (phage lambda and maltose receptor) -1.1  
D-Fructose Psest_1948 Ribosome modulation factor -1.2  
D-Fructose Psest_2317 Uncharacterized protein conserved in bacteria +1.9  
D-Fructose Psest_2380 Uncharacterized conserved protein -1.9  
D-Fructose Psest_2382 coenzyme PQQ biosynthesis probable peptidase PqqF -1.9  
D-Fructose Psest_2609 Glycosyltransferase +1.4  
D-Fructose Psest_2806 RNA polymerase sigma factor RpoS +3.2  
D-Fructose Psest_3352 DnaK suppressor protein -1.2  
D-Fructose Psest_3353 PTS system, fructose-specific, IIB component/PTS system, fructose subfamily, IIC component -6.3 Yes
D-Fructose Psest_3354 1-phosphofructokinase (EC 2.7.1.56) (from data) -6.8 Yes
D-Fructose Psest_3355 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) -5.5 Yes
D-Fructose Psest_3356 D-fructose-responsive transcription factor +2.9 Yes
D-Fructose Psest_3655 ABC-type spermidine/putrescine transport system, permease component II -1.1  
D-Fructose Psest_3872 FAD/FMN-containing dehydrogenases -1.8  
D-Gluconic Acid sodium salt Psest_2124 D-gluconate TRAP transporter, large permease component (from data) -4.8 Yes
D-Gluconic Acid sodium salt Psest_2125 D-gluconate TRAP transporter, periplasmic component (from data) -5.4 Yes
D-Gluconic Acid sodium salt Psest_2126 Transcriptional regulators +3.6  
D-Maltose monohydrate Psest_1900 Maltoporin (phage lambda and maltose receptor) -2.0  
D-Maltose monohydrate Psest_0208 Uncharacterized protein conserved in bacteria -1.5  
D-Maltose monohydrate Psest_2158 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase -3.7  
D-Maltose monohydrate Psest_0248 Transcriptional regulator -1.4  
D-Maltose monohydrate Psest_3375 prepilin-type N-terminal cleavage/methylation domain -1.9  
D-Maltose monohydrate Psest_0450 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) -3.2  
D-Maltose monohydrate Psest_0863 maltose ABC transporter, substrate-binding component MalE (from data) -5.8 Yes
D-Maltose monohydrate Psest_0864 maltose ABC transporter, permease component 1 (MalF) (from data) -5.9 Yes
D-Maltose monohydrate Psest_0865 maltose ABC transporter, permease component 2 (MalG) (from data) -5.8 Yes
D-Maltose monohydrate Psest_0866 ATP-dependent transcriptional regulator -6.8 Yes
D-Maltose monohydrate Psest_0868 Glutathione S-transferase -2.2  
D-Maltose monohydrate Psest_0870 Alpha-glucosidase (EC 3.2.1.20) (from data) -5.5 Yes
D-Maltose monohydrate Psest_0871 maltose ABC transporter, ATPase component MalK (from data) -6.3 Yes
Ethanol Psest_0105 malonate decarboxylase, beta subunit +1.5  
Ethanol Psest_0108 malonate decarboxylase, epsilon subunit +1.7  
Ethanol Psest_1922 aminopeptidase N, Escherichia coli type -1.9  
Ethanol Psest_2014 Isocitrate lyase (EC 4.1.3.1) (from data) -3.2  
Ethanol Psest_2038 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain -3.2 Yes
Ethanol Psest_2040 alcohol ABC transporter, permease protein -2.3 Yes
Ethanol Psest_2042 PQQ-dependent catabolism-associated beta-propeller protein -2.2 Yes
Ethanol Psest_2044 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system -2.5 Yes
Ethanol Psest_2048 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain -2.9  
Ethanol Psest_2053 Uncharacterized low-complexity proteins -1.7 Yes
Ethanol Psest_2054 PQQ-dependent dehydrogenase, methanol/ethanol family -1.8 Yes
Ethanol Psest_2055 cytochrome c550 (from data) -4.4 Yes
Ethanol Psest_2056 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain -1.6 Yes
Ethanol Psest_2060 PQQ-dependent dehydrogenase, methanol/ethanol family -2.0 Yes
Ethanol Psest_2267 PAS domain S-box -1.5 Yes
Ethanol Psest_2270 coenzyme PQQ biosynthesis protein E -2.4 Yes
Ethanol Psest_2271 coenzyme PQQ biosynthesis protein PqqD -2.4 Yes
Ethanol Psest_2272 coenzyme PQQ biosynthesis protein C -3.7 Yes
Ethanol Psest_2273 coenzyme PQQ biosynthesis protein B -3.4 Yes
Ethanol Psest_2274 coenzyme PQQ biosynthesis protein A -2.7  
Ethanol Psest_2276 Aldehyde dehydrogenase (EC 1.2.1.3) (from data) -2.6 Yes
Ethanol Psest_2380 Uncharacterized conserved protein +1.1  
Ethanol Psest_2381 hypothetical protein +1.5  
Ethanol Psest_2382 coenzyme PQQ biosynthesis probable peptidase PqqF -3.3 Yes
Ethanol Psest_2600 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis +1.8  
Ethanol Psest_2602 Glycosyltransferases involved in cell wall biogenesis +1.9  
Ethanol Psest_2603 capsular exopolysaccharide family +1.7  
Ethanol Psest_2604 WbqC-like protein family. +2.0  
Ethanol Psest_2608 hypothetical protein +1.1  
Ethanol Psest_2609 Glycosyltransferase +1.1  
Ethanol Psest_2611 Glycosyltransferase +1.1  
Ethanol Psest_2614 Predicted glycosyltransferases +1.1  
Ethanol Psest_2942 Surface lipoprotein +1.2  
Ethanol Psest_3192 diguanylate cyclase (GGDEF) domain +3.1  
Ethanol Psest_3213 acetate kinase -3.2  
Ethanol Psest_3214 phosphate acetyltransferase -3.9  
Glycolic Acid Psest_1178 D-glycerate 2-kinase (EC 2.7.1.-) (from data) -6.1 Yes
Glycolic Acid Psest_1180 hydroxypyruvate isomerase -5.9 Yes
Glycolic Acid Psest_1181 Glyoxylate carboligase (EC 4.1.1.47) (from data) -5.4 Yes
Glycolic Acid Psest_1182 Transcriptional regulator -6.1 Yes
Glycolic Acid Psest_1335 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) -1.7 Yes
Glycolic Acid Psest_1557 Phosphoenolpyruvate carboxylase -1.9  
Glycolic Acid Psest_2849 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit -1.5  
Glycolic Acid Psest_2851 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit -1.3  
Glycolic Acid Psest_0349 DNA polymerase III, alpha subunit (gram-positive type) +1.5  
Glycolic Acid Psest_0350 Predicted signal-transduction protein containing cAMP-binding and CBS domains -3.0  
Glycolic Acid Psest_3651 2-phosphoglycolate phosphatase, prokaryotic -5.1 Yes
Glycolic Acid Psest_3839 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) -5.6 Yes
Glycolic Acid Psest_3840 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) -5.7 Yes
Glycolic Acid Psest_3841 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) -5.5 Yes
Glycolic Acid Psest_3842 Transcriptional regulators -5.4 Yes
Glycolic Acid Psest_3994 Signal transduction histidine kinase -1.3  
Glycolic Acid Psest_0504 Putative effector of murein hydrolase LrgA -4.6  
L-Alanine Psest_3438 Glutamate dehydrogenase/leucine dehydrogenase -2.4 Yes
L-Alanine Psest_0347 large component of pyruvate/D-alanine transporter (actP-like) (from data) +5.1  
L-Alanine Psest_0349 DNA polymerase III, alpha subunit (gram-positive type) +4.4  
L-Alanine Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) -4.1 Yes
L-Alanine Psest_3794 Transcriptional regulators -3.7 Yes
L-Alanine Psest_4305 NAD-dependent aldehyde dehydrogenases -1.4  
L-Alanine Psest_4382 hypothetical protein +1.6  
L-Alanine Psest_1006 dTDP-4-dehydrorhamnose reductase -1.4  
L-Asparagine Psest_4076 hypothetical protein -2.4  
L-Glutamic acid monopotassium salt monohydrate Psest_1944 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form (from data) -1.1  
L-Glutamic acid monopotassium salt monohydrate Psest_0248 Transcriptional regulator -1.9  
L-Glutamic acid monopotassium salt monohydrate Psest_4075 symporter for L-glutamate, L-glutamine, and L-proline (from data) -2.5 Yes
L-Glutamine Psest_1123 adhesin-associated sorting protein (DUF1329) (from data) +1.5  
L-Glutamine Psest_1542 Uncharacterized proteins, homologs of lactam utilization protein B +1.3 Yes
L-Glutamine Psest_1944 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form (from data) -1.4  
L-Glutamine Psest_0248 Transcriptional regulator -2.8  
L-Glutamine Psest_0301 Methylase of chemotaxis methyl-accepting proteins +1.7  
L-Glutamine Psest_0302 Chemotaxis protein histidine kinase and related kinases +1.9  
L-Glutamine Psest_3192 diguanylate cyclase (GGDEF) domain +2.8  
L-Glutamine Psest_3537 hypothetical protein -1.3  
L-Glutamine Psest_3900 Spermidine/putrescine-binding periplasmic protein +1.5  
L-Glutamine Psest_3901 diguanylate cyclase (GGDEF) domain +1.0  
L-Glutamine Psest_4075 symporter for L-glutamate, L-glutamine, and L-proline (from data) -1.9 Yes
L-Glutamine Psest_4081 Glutaminase (EC 3.5.1.2) (from data) -4.5 Yes
L-Glutamine Psest_4193 Predicted signal transduction protein +2.1  
L-Isoleucine Psest_1989 Transcriptional regulators +1.7  
L-Isoleucine Psest_2320 2-methylcitrate synthase/citrate synthase II -4.5 Yes
L-Isoleucine Psest_2436 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) -1.7 Yes
L-Isoleucine Psest_2437 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) -2.5  
L-Isoleucine Psest_2445 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) -3.5 Yes
L-Isoleucine Psest_2448 AraC-type DNA-binding domain-containing proteins -6.5 Yes
L-Isoleucine Psest_3516 Leucine dehydrogenase (EC 1.4.1.9) (from data) -3.7  
L-Isoleucine Psest_3517 branched-chain ketoacid ferredoxin reductase (EC 1.2.7.7) active on 4-methyl-2-oxopentanoate, (S)-3-methyl-2-oxopentanoate, or 3-methyl-2-oxobutanoate (from data) -5.7  
L-Isoleucine Psest_4012 TRAP-type mannitol/chloroaromatic compound transport system, small permease component -1.1  
L-Isoleucine Psest_0450 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) -4.5 Yes
L-Isoleucine Psest_0571 Transcriptional regulators -2.2 Yes
L-Isoleucine Psest_0920 Transcriptional regulators +1.4 Yes
L-Leucine Psest_1077 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) (from data) -6.4 Yes
L-Leucine Psest_1078 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) -6.5  
L-Leucine Psest_1081 hypothetical protein -6.0  
L-Leucine Psest_1083 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) -5.9 Yes
L-Leucine Psest_1084 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) -6.3 Yes
L-Leucine Psest_1402 Putative threonine efflux protein -1.8  
L-Leucine Psest_1403 Transcriptional regulators -1.8  
L-Leucine Psest_1857 Isocitrate dehydrogenase kinase/phosphatase -1.4 Yes
L-Leucine Psest_1918 Calcineurin-like phosphoesterase. -1.2 Yes
L-Leucine Psest_2014 Isocitrate lyase (EC 4.1.3.1) (from data) -5.8 Yes
L-Leucine Psest_0248 Transcriptional regulator -2.3  
L-Leucine Psest_3375 prepilin-type N-terminal cleavage/methylation domain -2.1  
L-Leucine Psest_3516 Leucine dehydrogenase (EC 1.4.1.9) (from data) -7.2  
L-Leucine Psest_3517 branched-chain ketoacid ferredoxin reductase (EC 1.2.7.7) active on 4-methyl-2-oxopentanoate, (S)-3-methyl-2-oxopentanoate, or 3-methyl-2-oxobutanoate (from data) -5.9 Yes
L-Leucine Psest_0354 Malate synthase G (EC 2.3.3.9) (from data) -2.1  
L-Malic acid disodium salt monohydrate Psest_3922 Response regulator of citrate/malate metabolism -1.7 Yes
L-Malic acid disodium salt monohydrate Psest_3924 Na+/citrate symporter -1.2  
L-Proline Psest_1083 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) +3.7  
L-Proline Psest_1281 Small-conductance mechanosensitive channel +1.2  
L-Proline Psest_1746 Flagellar motor protein -1.2  
L-Proline Psest_1989 Transcriptional regulators +1.9  
L-Proline Psest_0197 TRAP transporter, 4TM/12TM fusion protein -1.5  
L-Proline Psest_0198 TRAP transporter solute receptor, TAXI family -1.5  
L-Proline Psest_2038 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain +1.3  
L-Proline Psest_0208 Uncharacterized protein conserved in bacteria +1.4  
L-Proline Psest_2267 PAS domain S-box +1.2  
L-Proline Psest_2317 Uncharacterized protein conserved in bacteria +2.0  
L-Proline Psest_3078 L-proline:Na+ symporter (from data) -1.1  
L-Proline Psest_3079 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) -2.8 Yes
L-Proline Psest_3406 Restriction endonuclease S subunits -1.0  
L-Proline Psest_3993 alpha-L-glutamate ligases, RimK family -1.5  
L-Proline Psest_4075 symporter for L-glutamate, L-glutamine, and L-proline (from data) -1.8  
L-Proline Psest_4203 NAD/NADP transhydrogenase alpha subunit +1.2  
L-Proline Psest_4205 NAD/NADP transhydrogenase beta subunit +1.0  
L-Proline Psest_0550 Predicted permease, DMT superfamily +1.1  
L-Proline Psest_0709 pseudouridine synthase, RluA family -1.5  
L-Proline Psest_0715 NADH dehydrogenase, FAD-containing subunit -1.4 Yes
L-tyrosine disodium salt Psest_1048 Uncharacterized paraquat-inducible protein A +2.4  
L-tyrosine disodium salt Psest_1050 Paraquat-inducible protein B +1.9  
L-tyrosine disodium salt Psest_1055 Saccharopine dehydrogenase and related proteins +2.1  
L-tyrosine disodium salt Psest_1071 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains -4.0  
L-tyrosine disodium salt Psest_1076 acetyl-CoA acetyltransferases -3.0 Yes
L-tyrosine disodium salt Psest_1077 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) (from data) -3.8 Yes
L-tyrosine disodium salt Psest_1123 adhesin-associated sorting protein (DUF1329) (from data) -2.4  
L-tyrosine disodium salt Psest_1141 diguanylate cyclase (GGDEF) domain +1.3  
L-tyrosine disodium salt Psest_1217 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein -2.7  
L-tyrosine disodium salt Psest_1335 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) -1.5  
L-tyrosine disodium salt Psest_1462 3-oxoacyl-[acyl-carrier-protein] synthase III +2.7  
L-tyrosine disodium salt Psest_1512 Predicted permease -3.9  
L-tyrosine disodium salt Psest_1531 hypothetical protein -3.4  
L-tyrosine disodium salt Psest_1557 Phosphoenolpyruvate carboxylase -4.5  
L-tyrosine disodium salt Psest_1608 glycerol-3-phosphate O-acyltransferase +1.2  
L-tyrosine disodium salt Psest_1682 Periplasmic serine proteases (ClpP class) -2.5  
L-tyrosine disodium salt Psest_1825 Predicted nucleoside-diphosphate sugar epimerases -1.7  
L-tyrosine disodium salt Psest_1844 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) -1.1  
L-tyrosine disodium salt Psest_1955 Predicted membrane protein +1.4  
L-tyrosine disodium salt Psest_1957 outer membrane porin, OprD family. -1.9  
L-tyrosine disodium salt Psest_0197 TRAP transporter, 4TM/12TM fusion protein +1.9  
L-tyrosine disodium salt Psest_0198 TRAP transporter solute receptor, TAXI family +1.9  
L-tyrosine disodium salt Psest_2014 Isocitrate lyase (EC 4.1.3.1) (from data) -1.9  
L-tyrosine disodium salt Psest_2102 5-methyltetrahydrofolate--homocysteine methyltransferase +1.8  
L-tyrosine disodium salt Psest_2132 Outer membrane protein -1.7  
L-tyrosine disodium salt Psest_2133 Uncharacterized protein conserved in bacteria -1.6  
L-tyrosine disodium salt Psest_2297 hypothetical protein -2.4  
L-tyrosine disodium salt Psest_2321 methylisocitrate lyase +1.6  
L-tyrosine disodium salt Psest_2334 Uncharacterized protein conserved in bacteria -1.9  
L-tyrosine disodium salt Psest_2380 Uncharacterized conserved protein -1.5  
L-tyrosine disodium salt Psest_2464 Predicted permease -2.6  
L-tyrosine disodium salt Psest_2729 Signal transduction histidine kinase -3.6  
L-tyrosine disodium salt Psest_2730 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain -4.8  
L-tyrosine disodium salt Psest_2815 S-formylglutathione hydrolase -2.8  
L-tyrosine disodium salt Psest_2849 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit -4.5  
L-tyrosine disodium salt Psest_2851 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit -4.0  
L-tyrosine disodium salt Psest_2979 sodium ion-translocating decarboxylase, beta subunit +1.5  
L-tyrosine disodium salt Psest_2980 oxaloacetate decarboxylase alpha subunit +2.8  
L-tyrosine disodium salt Psest_2997 Long-chain fatty acid transport protein -4.1  
L-tyrosine disodium salt Psest_3015 hypothetical protein +1.2  
L-tyrosine disodium salt Psest_3016 TonB-dependent vitamin B12 receptor +2.0  
L-tyrosine disodium salt Psest_3075 sodium/proline symporter +1.6  
L-tyrosine disodium salt Psest_3078 L-proline:Na+ symporter (from data) +1.7  
L-tyrosine disodium salt Psest_3079 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) +1.4  
L-tyrosine disodium salt Psest_0307 Cytochrome B561 -1.4  
L-tyrosine disodium salt Psest_3204 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) -1.7  
L-tyrosine disodium salt Psest_3215 1-acyl-sn-glycerol-3-phosphate acyltransferase +2.4  
L-tyrosine disodium salt Psest_0319 Predicted ferric reductase -1.7  
L-tyrosine disodium salt Psest_3438 Glutamate dehydrogenase/leucine dehydrogenase -2.3  
L-tyrosine disodium salt Psest_3510 Na+-dependent transporters of the SNF family -3.8  
L-tyrosine disodium salt Psest_3511 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) -4.4 Yes
L-tyrosine disodium salt Psest_3512 fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) (from data) -4.5  
L-tyrosine disodium salt Psest_3513 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) -4.7  
L-tyrosine disodium salt Psest_3514 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) -4.2 Yes
L-tyrosine disodium salt Psest_0347 large component of pyruvate/D-alanine transporter (actP-like) (from data) -2.1  
L-tyrosine disodium salt Psest_0348 hypothetical protein -3.6  
L-tyrosine disodium salt Psest_0349 DNA polymerase III, alpha subunit (gram-positive type) -1.7  
L-tyrosine disodium salt Psest_3678 acyl-phosphate glycerol 3-phosphate acyltransferase +2.5  
L-tyrosine disodium salt Psest_3836 L-lactate permease -3.3  
L-tyrosine disodium salt Psest_3872 FAD/FMN-containing dehydrogenases -3.0  
L-tyrosine disodium salt Psest_3994 Signal transduction histidine kinase -3.3  
L-tyrosine disodium salt Psest_4110 Deoxycytidylate deaminase +1.4  
L-tyrosine disodium salt Psest_4222 Predicted Rossmann fold nucleotide-binding protein -2.3  
L-tyrosine disodium salt Psest_0419 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) -1.4  
L-tyrosine disodium salt Psest_4283 Spermidine/putrescine-binding periplasmic protein -2.3  
L-tyrosine disodium salt Psest_4286 Glutamine synthetase -1.5  
L-tyrosine disodium salt Psest_4293 PAS domain S-box/diguanylate cyclase (GGDEF) domain +1.4  
L-tyrosine disodium salt Psest_4337 TonB-dependent siderophore receptor +1.0  
L-tyrosine disodium salt Psest_0455 ADP-heptose:LPS heptosyltransferase +3.8  
L-tyrosine disodium salt Psest_0527 Uncharacterized conserved protein -1.2  
L-tyrosine disodium salt Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB +1.5  
L-tyrosine disodium salt Psest_0779 tyrosine aminotransferase (EC 2.6.1.57) (from data) -5.0 Yes
L-tyrosine disodium salt Psest_0781 phenylalanine-4-hydroxylase, monomeric form -2.5 Yes
L-tyrosine disodium salt Psest_0782 Transcriptional regulator of aromatic amino acids metabolism -4.8 Yes
L-tyrosine disodium salt Psest_0956 Transcriptional regulators +3.2  
Potassium acetate Psest_2014 Isocitrate lyase (EC 4.1.3.1) (from data) -5.3 Yes
Potassium acetate Psest_3101 L-aspartate oxidase -1.5  
Potassium acetate Psest_3213 acetate kinase -4.5  
Potassium acetate Psest_3214 phosphate acetyltransferase -4.8 Yes
Potassium acetate Psest_0354 Malate synthase G (EC 2.3.3.9) (from data) -2.0  
Sodium D,L-Lactate Psest_3375 prepilin-type N-terminal cleavage/methylation domain -1.6  
Sodium D-Lactate Psest_3839 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) -2.2 Yes
Sodium D-Lactate Psest_3840 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) -2.7 Yes
Sodium D-Lactate Psest_3841 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) -2.3 Yes
Sodium Fumarate dibasic Psest_4266 Signal transduction histidine kinase regulating C4-dicarboxylate transport system -2.9  
Sodium Fumarate dibasic Psest_4267 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains -3.5 Yes
Sodium Fumarate dibasic Psest_4268 tripartite ATP-independent periplasmic transporter solute receptor, DctP family -3.5 Yes
Sodium Fumarate dibasic Psest_4269 C4-dicarboxylate transporter, DctQ subunit (from data) -3.9 Yes
Sodium Fumarate dibasic Psest_4270 TRAP transporter, DctM subunit -3.8  
Sodium butyrate Psest_1055 Saccharopine dehydrogenase and related proteins +1.7  
Sodium butyrate Psest_1187 exodeoxyribonuclease III +2.5  
Sodium butyrate Psest_0146 Uncharacterized protein involved in outer membrane biogenesis variable  
Sodium butyrate Psest_1569 PAS domain S-box/diguanylate cyclase (GGDEF) domain +2.7  
Sodium butyrate Psest_1703 Uncharacterized protein conserved in bacteria -1.9 Yes
Sodium butyrate Psest_1810 UDP-N-acetylglucosamine 4,6-dehydratase -2.2  
Sodium butyrate Psest_1821 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -1.8  
Sodium butyrate Psest_1825 Predicted nucleoside-diphosphate sugar epimerases -2.1  
Sodium butyrate Psest_1851 Uncharacterized protein conserved in bacteria -3.4 Yes
Sodium butyrate Psest_1853 MoxR-like ATPases -4.0  
Sodium butyrate Psest_1989 Transcriptional regulators -1.4  
Sodium butyrate Psest_1991 Glutathione S-transferase +1.1  
Sodium butyrate Psest_2014 Isocitrate lyase (EC 4.1.3.1) (from data) -4.6  
Sodium butyrate Psest_2026 Uncharacterized conserved protein variable  
Sodium butyrate Psest_2029 Putative arginyl-tRNA:protein arginylyltransferase +1.7  
Sodium butyrate Psest_2441 hypothetical protein +1.4  
Sodium butyrate Psest_2461 tRNA 2-selenouridine synthase +1.4  
Sodium butyrate Psest_0248 Transcriptional regulator -2.2  
Sodium butyrate Psest_2609 Glycosyltransferase +1.2  
Sodium butyrate Psest_2614 Predicted glycosyltransferases +1.0  
Sodium butyrate Psest_0262 PAS domain S-box -2.3  
Sodium butyrate Psest_0264 monofunctional biosynthetic peptidoglycan transglycosylase +1.3  
Sodium butyrate Psest_2806 RNA polymerase sigma factor RpoS +2.5  
Sodium butyrate Psest_3204 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) -2.0  
Sodium butyrate Psest_3213 acetate kinase variable  
Sodium butyrate Psest_3235 Protein of unknown function (DUF1329). +2.1 Yes
Sodium butyrate Psest_3375 prepilin-type N-terminal cleavage/methylation domain -3.8  
Sodium butyrate Psest_0347 large component of pyruvate/D-alanine transporter (actP-like) (from data) -1.4  
Sodium butyrate Psest_3532 Peptidase propeptide and YPEB domain. -1.6  
Sodium butyrate Psest_0350 Predicted signal-transduction protein containing cAMP-binding and CBS domains +2.7  
Sodium butyrate Psest_0354 Malate synthase G (EC 2.3.3.9) (from data) -1.2  
Sodium butyrate Psest_3795 Glycine/D-amino acid oxidases (deaminating) -1.7  
Sodium butyrate Psest_3900 Spermidine/putrescine-binding periplasmic protein +1.3  
Sodium butyrate Psest_3970 Transcriptional regulator +1.4  
Sodium butyrate Psest_3974 Anti-sigma regulatory factor (Ser/Thr protein kinase) +1.4  
Sodium butyrate Psest_3975 Signal transduction histidine kinase +1.0  
Sodium butyrate Psest_3976 PAS domain S-box +1.1  
Sodium butyrate Psest_4139 PAS domain S-box +1.0  
Sodium butyrate Psest_0418 diguanylate cyclase (GGDEF) domain +3.6 Yes
Sodium butyrate Psest_4250 hypothetical protein -1.0  
Sodium butyrate Psest_0419 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) -5.3 Yes
Sodium butyrate Psest_4293 PAS domain S-box/diguanylate cyclase (GGDEF) domain +1.3  
Sodium butyrate Psest_4297 PAS domain S-box -1.8  
Sodium butyrate Psest_0464 Mannosyltransferase OCH1 and related enzymes variable  
Sodium butyrate Psest_0465 Acetyltransferase (isoleucine patch superfamily) -1.8  
Sodium butyrate Psest_0541 succinate CoA transferases variable  
Sodium butyrate Psest_0636 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein +1.2  
Sodium butyrate Psest_0707 MYND finger. -1.5  
Sodium propionate Psest_1055 Saccharopine dehydrogenase and related proteins +8.6  
Sodium propionate Psest_1099 Type I restriction-modification system methyltransferase subunit +1.2  
Sodium propionate Psest_1508 succinate CoA transferases +1.6 Yes
Sodium propionate Psest_1557 Phosphoenolpyruvate carboxylase -2.3 Yes
Sodium propionate Psest_1569 PAS domain S-box/diguanylate cyclase (GGDEF) domain -1.8  
Sodium propionate Psest_1653 transcription-repair coupling factor (mfd) +1.4  
Sodium propionate Psest_0189 Negative regulator of beta-lactamase expression -2.4 Yes
Sodium propionate Psest_1948 Ribosome modulation factor +2.7  
Sodium propionate Psest_0196 Uncharacterized membrane protein, required for spore maturation in B.subtilis. -1.8 Yes
Sodium propionate Psest_2158 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase -2.2  
Sodium propionate Psest_3140 NTP pyrophosphohydrolases including oxidative damage repair enzymes -2.7  
Sodium propionate Psest_3213 acetate kinase +8.9 Yes
Sodium propionate Psest_3214 phosphate acetyltransferase +8.3 Yes
Sodium propionate Psest_3318 Predicted Zn-dependent proteases and their inactivated homologs -1.0  
Sodium propionate Psest_3537 hypothetical protein +1.6  
Sodium propionate Psest_3672 Putative Ser protein kinase -1.9 Yes
Sodium propionate Psest_3673 Uncharacterized conserved protein -1.5 Yes
Sodium propionate Psest_3674 Uncharacterized conserved protein -1.5 Yes
Sodium propionate Psest_3808 Protein of unknown function (DUF3360). -2.0  
Sodium propionate Psest_3872 FAD/FMN-containing dehydrogenases +2.3  
Sodium propionate Psest_3961 NTP pyrophosphohydrolases including oxidative damage repair enzymes +1.6  
Sodium propionate Psest_0397 Small-conductance mechanosensitive channel -1.3  
Sodium propionate Psest_4141 3-carboxymuconate cyclase +2.2  
Sodium propionate Psest_4222 Predicted Rossmann fold nucleotide-binding protein -1.3 Yes
Sodium propionate Psest_4286 Glutamine synthetase -2.0 Yes
Sodium propionate Psest_4288 Glutamate--putrescine ligase (EC 6.3.1.11) (from data) +1.9  
Sodium propionate Psest_4323 Predicted acyltransferases -1.3  
Sodium propionate Psest_4395 hypothetical protein -1.3  
Sodium propionate Psest_0494 Rhodanese-related sulfurtransferase -1.4  
Sodium propionate Psest_0541 succinate CoA transferases +2.5  
Sodium pyruvate Psest_0347 large component of pyruvate/D-alanine transporter (actP-like) (from data) -2.2 Yes
Sodium pyruvate Psest_0349 DNA polymerase III, alpha subunit (gram-positive type) -1.6 Yes
Sodium succinate dibasic hexahydrate Psest_2382 coenzyme PQQ biosynthesis probable peptidase PqqF -2.5  
Sodium succinate dibasic hexahydrate Psest_2846 monovalent cation/proton antiporter, MnhG/PhaG subunit -1.9  
Sodium succinate dibasic hexahydrate Psest_2849 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit -2.2  
Sodium succinate dibasic hexahydrate Psest_2851 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit -2.0  
Sodium succinate dibasic hexahydrate Psest_4266 Signal transduction histidine kinase regulating C4-dicarboxylate transport system -3.6 Yes
Sodium succinate dibasic hexahydrate Psest_4267 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains -5.1 Yes
Sodium succinate dibasic hexahydrate Psest_4268 tripartite ATP-independent periplasmic transporter solute receptor, DctP family -4.9 Yes
Sodium succinate dibasic hexahydrate Psest_4269 C4-dicarboxylate transporter, DctQ subunit (from data) -5.3 Yes
Sodium succinate dibasic hexahydrate Psest_4270 TRAP transporter, DctM subunit -5.1  
Trisodium citrate dihydrate Psest_0203 Signal transduction histidine kinase -5.0 Yes
Trisodium citrate dihydrate Psest_0204 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain -4.8 Yes
Trisodium citrate dihydrate Psest_0205 tricarboxylate porin (from data) -2.8 Yes
Trisodium citrate dihydrate Psest_0206 Uncharacterized protein conserved in bacteria -5.3 Yes
Trisodium citrate dihydrate Psest_0208 Uncharacterized protein conserved in bacteria -5.2 Yes
Trisodium citrate dihydrate Psest_2759 Co/Zn/Cd efflux system component -1.5  
Trisodium citrate dihydrate Psest_2846 monovalent cation/proton antiporter, MnhG/PhaG subunit -2.1  
Trisodium citrate dihydrate Psest_2849 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit -2.6  
Trisodium citrate dihydrate Psest_2851 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit -2.5  
Tween 20 Psest_1123 adhesin-associated sorting protein (DUF1329) (from data) -2.2  
Tween 20 Psest_1124 ATP-dependent transcriptional regulator -1.0 Yes
Tween 20 Psest_1335 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) -2.4 Yes
Tween 20 Psest_2014 Isocitrate lyase (EC 4.1.3.1) (from data) -5.1 Yes
Tween 20 Psest_2729 Signal transduction histidine kinase -1.8 Yes
Tween 20 Psest_2730 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain -2.7 Yes
Tween 20 Psest_0354 Malate synthase G (EC 2.3.3.9) (from data) -1.9  
Tween 20 Psest_3872 FAD/FMN-containing dehydrogenases -1.8  
Tween 20 Psest_0419 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) -3.3 Yes
a-Ketoglutaric acid disodium salt hydrate Psest_4131 alpha-ketoglutarate sensor protein (mifS) (from data) -5.1 Yes
a-Ketoglutaric acid disodium salt hydrate Psest_4132 alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) -5.1 Yes
a-Ketoglutaric acid disodium salt hydrate Psest_4269 C4-dicarboxylate transporter, DctQ subunit (from data) -1.0 Yes
a-Ketoglutaric acid disodium salt hydrate Psest_4270 TRAP transporter, DctM subunit -1.0 Yes
a-Ketoglutaric acid disodium salt hydrate Psest_0084 alpha-ketoglutarate TRAP transporter, 4TM/12TM components (from data) -4.5  
a-Ketoglutaric acid disodium salt hydrate Psest_0085 alpha-ketoglutarate TRAP transporter, solute receptor component (from data) -5.6  
casamino acids Psest_3511 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) -2.0 Yes
casamino acids Psest_3512 fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) (from data) -1.1