| Condition | Gene | Description | Fitness | Cons. |
|---|
| Citric Acid | Xcc-8004.1033.1 | hypothetical protein | +1.1 | |
| Citric Acid | Xcc-8004.1066.1 | hypothetical protein | -1.5 | |
| Citric Acid | Xcc-8004.1110.1 | DedA protein | variable | |
| Citric Acid | Xcc-8004.1224.1 | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | -2.4 | |
| Citric Acid | Xcc-8004.1332.1 | Ribosomal protein S6 glutaminyl transferase | +2.8 | |
| Citric Acid | Xcc-8004.1348.1 | Type IV pilin PilA | -1.4 | |
| Citric Acid | Xcc-8004.1478.1 | Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) | -1.9 | |
| Citric Acid | Xcc-8004.1480.1 | ATP dependent RNA helicase | -1.0 | |
| Citric Acid | Xcc-8004.1577.1 | Butyryl-CoA dehydrogenase (EC 1.3.99.2) | -2.0 | |
| Citric Acid | Xcc-8004.1655.1 | Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) | -3.0 | |
| Citric Acid | Xcc-8004.1671.1 | FIG01211114: hypothetical protein | -1.1 | |
| Citric Acid | Xcc-8004.1702.1 | Proteins containing SET domain | +2.5 | |
| Citric Acid | Xcc-8004.1711.1 | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | -2.4 | |
| Citric Acid | Xcc-8004.1776.1 | Histone acetyltransferase HPA2 and related acetyltransferases | variable | |
| Citric Acid | Xcc-8004.1824.1 | Zinc-regulated outer membrane receptor | -1.5 | |
| Citric Acid | Xcc-8004.1826.1 | FIG01217340: hypothetical protein | variable | |
| Citric Acid | Xcc-8004.184.1 | Alpha-amylase (EC 3.2.1.1) | -1.3 | |
| Citric Acid | Xcc-8004.185.1 | Trehalose synthase (EC 5.4.99.16) | -1.3 | |
| Citric Acid | Xcc-8004.1890.1 | hypothetical protein | -1.9 | |
| Citric Acid | Xcc-8004.1913.1 | NLP/P60 family protein | -3.5 | |
| Citric Acid | Xcc-8004.205.1 | Ribose operon repressor | -1.3 | |
| Citric Acid | Xcc-8004.2084.1 | Xanthan biosynthesis acetyltransferase GumF | +1.5 | |
| Citric Acid | Xcc-8004.2152.1 | Chaperone protein HtpG | -1.6 | |
| Citric Acid | Xcc-8004.2158.1 | Gamma-glutamyltranspeptidase (EC 2.3.2.2) | -1.4 | |
| Citric Acid | Xcc-8004.2165.1 | Ornithine aminotransferase (EC 2.6.1.13); Succinylornithine transaminase (EC 2.6.1.81); Acetylornithine aminotransferase (EC 2.6.1.11); N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) | -2.3 | |
| Citric Acid | Xcc-8004.2167.1 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) | -3.5 | |
| Citric Acid | Xcc-8004.2224.1 | tRNA-i(6)A37 methylthiotransferase | -2.1 | |
| Citric Acid | Xcc-8004.2231.1 | Stringent starvation protein A | variable | |
| Citric Acid | Xcc-8004.2332.1 | Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) | -1.9 | |
| Citric Acid | Xcc-8004.2333.1 | Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) | -2.0 | |
| Citric Acid | Xcc-8004.2348.1 | hypothetical protein | -3.7 | |
| Citric Acid | Xcc-8004.2349.1 | Aliphatic amidase AmiE (EC 3.5.1.4) | -2.0 | |
| Citric Acid | Xcc-8004.2370.1 | Hypothetical protein USSDB1E | +1.4 | |
| Citric Acid | Xcc-8004.2416.1 | FIG01210457: hypothetical protein | -1.0 | |
| Citric Acid | Xcc-8004.2616.1 | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | -1.0 | Yes |
| Citric Acid | Xcc-8004.273.1 | FIG01209870: hypothetical protein | variable | |
| Citric Acid | Xcc-8004.2739.1 | Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family | -1.7 | |
| Citric Acid | Xcc-8004.2740.1 | Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) | variable | |
| Citric Acid | Xcc-8004.28.1 | Carboxyl-terminal protease (EC 3.4.21.102) | -1.4 | |
| Citric Acid | Xcc-8004.2894.1 | Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) | -1.0 | |
| Citric Acid | Xcc-8004.2896.1 | Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | -1.3 | |
| Citric Acid | Xcc-8004.2952.1 | transcriptional regulator, Crp/Fnr family | -1.6 | |
| Citric Acid | Xcc-8004.3118.1 | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | -2.2 | |
| Citric Acid | Xcc-8004.3129.1 | FIG139438: lipoprotein B | +3.4 | |
| Citric Acid | Xcc-8004.3293.1 | Histidine utilization repressor | -1.4 | |
| Citric Acid | Xcc-8004.3370.1 | 3'-to-5' exoribonuclease RNase R | -2.0 | |
| Citric Acid | Xcc-8004.3389.1 | Nucleoprotein/polynucleotide-associated enzyme | +2.4 | |
| Citric Acid | Xcc-8004.3392.1 | FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) | +1.3 | |
| Citric Acid | Xcc-8004.3507.1 | Lipid A export ATP-binding/permease protein MsbA | -1.3 | |
| Citric Acid | Xcc-8004.3598.1 | Ferredoxin II | -2.7 | |
| Citric Acid | Xcc-8004.3604.1 | COG2907: Amine oxidase, flavin-containing | -1.2 | |
| Citric Acid | Xcc-8004.3605.1 | hypothetical protein | -1.2 | |
| Citric Acid | Xcc-8004.3839.1 | Arginine-tRNA-protein transferase (EC 2.3.2.8) | -2.4 | |
| Citric Acid | Xcc-8004.384.1 | Deoxyribonuclease TatD | -2.2 | |
| Citric Acid | Xcc-8004.4035.1 | FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) | -2.3 | |
| Citric Acid | Xcc-8004.4085.1 | Sulfate transport system permease protein CysW | -3.0 | |
| Citric Acid | Xcc-8004.4087.1 | Sulfate and thiosulfate binding protein CysP | -3.7 | |
| Citric Acid | Xcc-8004.4092.1 | FIG01209901: hypothetical protein | -1.6 | |
| Citric Acid | Xcc-8004.4107.1 | FIG01210215: hypothetical protein | variable | |
| Citric Acid | Xcc-8004.4214.1 | Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) | -1.2 | |
| Citric Acid | Xcc-8004.4222.1 | Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) | variable | |
| Citric Acid | Xcc-8004.4265.1 | acetoin utilization family protein | -2.8 | |
| Citric Acid | Xcc-8004.4336.1 | 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) | -2.6 | |
| Citric Acid | Xcc-8004.4396.1 | N-acetylglutamate synthase (EC 2.3.1.1) | -1.5 | |
| Citric Acid | Xcc-8004.4463.1 | Integral membrane protein | -1.0 | |
| Citric Acid | Xcc-8004.4492.1 | Bifunctional acetyl transferase/isomerase | +1.3 | |
| Citric Acid | Xcc-8004.4494.1 | hypothetical protein | +2.5 | |
| Citric Acid | Xcc-8004.4505.1 | membrane protein WxcE | +2.2 | |
| Citric Acid | Xcc-8004.4508.1 | Kinase | +3.1 | |
| Citric Acid | Xcc-8004.4518.1 | Cystathionine beta-synthase (EC 4.2.1.22) | +3.0 | |
| Citric Acid | Xcc-8004.4578.1 | FIG048548: ATP synthase protein I2 | -1.5 | |
| Citric Acid | Xcc-8004.4601.1 | Methionine ABC transporter substrate-binding protein | -2.1 | |
| Citric Acid | Xcc-8004.4603.1 | Methionine ABC transporter ATP-binding protein | -2.5 | |
| Citric Acid | Xcc-8004.4618.1 | FIG01209774: hypothetical protein | -2.7 | |
| Citric Acid | Xcc-8004.469.1 | Glycerol kinase (EC 2.7.1.30) | variable | |
| Citric Acid | Xcc-8004.4777.1 | ATP-dependent RNA helicase RhlB | -2.0 | |
| Citric Acid | Xcc-8004.4838.1 | Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA | -1.5 | |
| Citric Acid | Xcc-8004.4877.1 | Membrane proteins related to metalloendopeptidases | -1.9 | |
| Citric Acid | Xcc-8004.488.1 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA | -3.6 | |
| Citric Acid | Xcc-8004.4920.1 | POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE) | -2.7 | |
| Citric Acid | Xcc-8004.4922.1 | Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 | -2.9 | |
| Citric Acid | Xcc-8004.4933.1 | Hydrolase or peptidase | -2.4 | |
| Citric Acid | Xcc-8004.4936.1 | FIG01212169: hypothetical protein | -1.5 | |
| Citric Acid | Xcc-8004.5062.1 | Integral membrane protein | -2.6 | |
| Citric Acid | Xcc-8004.5065.1 | Mg/Co/Ni transporter MgtE / CBS domain | variable | |
| Citric Acid | Xcc-8004.5153.1 | Acetate permease ActP (cation/acetate symporter) | variable | |
| Citric Acid | Xcc-8004.5154.1 | Putative membrane protein, clustering with ActP | variable | |
| Citric Acid | Xcc-8004.5156.1 | FIG01210829: hypothetical protein | variable | |
| Citric Acid | Xcc-8004.5157.1 | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | variable | |
| Citric Acid | Xcc-8004.5158.1 | Transcriptional regulator, LuxR family | variable | |
| Citric Acid | Xcc-8004.5181.1 | Sensor histidine kinase | variable | |
| Citric Acid | Xcc-8004.5254.1 | Transcriptional regulator, LacI family | +1.2 | |
| Citric Acid | Xcc-8004.532.1 | ABC1 family protein | -2.0 | |
| Citric Acid | Xcc-8004.540.1 | Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141) | -2.4 | |
| Citric Acid | Xcc-8004.541.1 | 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) | -2.2 | |
| Citric Acid | Xcc-8004.544.1 | Glycogen debranching enzyme (EC 3.2.1.-) | -2.4 | |
| Citric Acid | Xcc-8004.570.1 | Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) | +1.5 | |
| Citric Acid | Xcc-8004.573.1 | Tryptophan 2,3-dioxygenase (EC 1.13.11.11) | -1.2 | |
| Citric Acid | Xcc-8004.636.1 | Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) | -3.1 | |
| Citric Acid | Xcc-8004.808.1 | Trehalase (EC 3.2.1.28); Periplasmic trehalase precursor (EC 3.2.1.28) | -1.0 | |
| Citric Acid | Xcc-8004.967.1 | Endonuclease/exonuclease/phosphatase family protein | +1.8 | |
| D-Fructose | Xcc-8004.1110.1 | DedA protein | -1.9 | |
| D-Fructose | Xcc-8004.184.1 | Alpha-amylase (EC 3.2.1.1) | -1.4 | |
| D-Fructose | Xcc-8004.2174.1 | hypothetical protein | -3.4 | Yes |
| D-Fructose | Xcc-8004.2175.1 | 1-phosphofructokinase (EC 2.7.1.56) | -3.4 | Yes |
| D-Fructose | Xcc-8004.2176.1 | Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) | -3.2 | Yes |
| D-Fructose | Xcc-8004.2348.1 | hypothetical protein | -1.2 | |
| D-Fructose | Xcc-8004.3118.1 | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | -1.4 | |
| D-Fructose | Xcc-8004.336.1 | Alpha/beta hydrolase | -1.4 | |
| D-Fructose | Xcc-8004.3507.1 | Lipid A export ATP-binding/permease protein MsbA | -2.0 | |
| D-Fructose | Xcc-8004.4085.1 | Sulfate transport system permease protein CysW | -2.7 | |
| D-Fructose | Xcc-8004.4087.1 | Sulfate and thiosulfate binding protein CysP | -3.2 | |
| D-Fructose | Xcc-8004.4314.1 | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | -3.5 | |
| D-Fructose | Xcc-8004.4336.1 | 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) | -3.1 | |
| D-Fructose | Xcc-8004.4618.1 | FIG01209774: hypothetical protein | -3.1 | |
| D-Fructose | Xcc-8004.4933.1 | Hydrolase or peptidase | -3.5 | |
| D-Fructose | Xcc-8004.4936.1 | FIG01212169: hypothetical protein | -1.2 | |
| D-Fructose | Xcc-8004.544.1 | Glycogen debranching enzyme (EC 3.2.1.-) | -1.5 | |
| D-Fructose | Xcc-8004.636.1 | Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) | -1.5 | |
| D-Glucose | Xcc-8004.1066.1 | hypothetical protein | -1.4 | Yes |
| D-Glucose | Xcc-8004.1110.1 | DedA protein | -1.7 | |
| D-Glucose | Xcc-8004.184.1 | Alpha-amylase (EC 3.2.1.1) | -2.4 | |
| D-Glucose | Xcc-8004.1883.1 | TldD protein, part of TldE/TldD proteolytic complex | +1.2 | |
| D-Glucose | Xcc-8004.1885.1 | TldE protein, part of TldE/TldD proteolytic complex | +1.1 | |
| D-Glucose | Xcc-8004.2084.1 | Xanthan biosynthesis acetyltransferase GumF | +1.3 | |
| D-Glucose | Xcc-8004.2348.1 | hypothetical protein | -1.5 | |
| D-Glucose | Xcc-8004.2349.1 | Aliphatic amidase AmiE (EC 3.5.1.4) | -1.4 | |
| D-Glucose | Xcc-8004.2369.1 | Sugar ABC transporter, sugar permease protein 2 USSDB1D | -1.3 | |
| D-Glucose | Xcc-8004.2415.1 | FIG137360: hypothetical protein | -1.4 | |
| D-Glucose | Xcc-8004.3129.1 | FIG139438: lipoprotein B | +2.1 | |
| D-Glucose | Xcc-8004.3327.1 | Kynureninase (EC 3.7.1.3) | -1.1 | |
| D-Glucose | Xcc-8004.3386.1 | Predicted mannose transporter, GGP family | -2.2 | Yes |
| D-Glucose | Xcc-8004.3389.1 | Nucleoprotein/polynucleotide-associated enzyme | +1.6 | |
| D-Glucose | Xcc-8004.3507.1 | Lipid A export ATP-binding/permease protein MsbA | -1.9 | |
| D-Glucose | Xcc-8004.3797.1 | hypothetical protein | +1.4 | |
| D-Glucose | Xcc-8004.4085.1 | Sulfate transport system permease protein CysW | -3.0 | |
| D-Glucose | Xcc-8004.4087.1 | Sulfate and thiosulfate binding protein CysP | -3.9 | |
| D-Glucose | Xcc-8004.4314.1 | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | -3.3 | |
| D-Glucose | Xcc-8004.4336.1 | 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) | -3.5 | |
| D-Glucose | Xcc-8004.4518.1 | Cystathionine beta-synthase (EC 4.2.1.22) | +1.3 | Yes |
| D-Glucose | Xcc-8004.4618.1 | FIG01209774: hypothetical protein | -3.8 | |
| D-Glucose | Xcc-8004.4777.1 | ATP-dependent RNA helicase RhlB | -1.5 | |
| D-Glucose | Xcc-8004.4933.1 | Hydrolase or peptidase | -2.7 | |
| D-Glucose | Xcc-8004.4936.1 | FIG01212169: hypothetical protein | -1.4 | |
| D-Glucose | Xcc-8004.5254.1 | Transcriptional regulator, LacI family | +1.0 | |
| D-Glucose | Xcc-8004.5291.1 | Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) | +1.1 | |
| D-Glucose | Xcc-8004.544.1 | Glycogen debranching enzyme (EC 3.2.1.-) | -2.3 | |
| D-Glucose | Xcc-8004.636.1 | Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) | -1.6 | |
| Pectin from apple | Xcc-8004.157.1 | 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) | -2.8 | |
| Pectin from apple | Xcc-8004.200.1 | 2-keto-4-pentenoate hydratase (EC 4.2.1.80) | -1.2 | |
| Pectin from apple | Xcc-8004.205.1 | Ribose operon repressor | -1.4 | |
| Pectin from apple | Xcc-8004.207.1 | hypothetical protein | -3.4 | |
| Pectin from apple | Xcc-8004.3080.1 | Galactonate dehydratase (EC 4.2.1.6) | -1.6 | |
| Pectin from apple | Xcc-8004.3276.1 | Transcriptional regulator, LysR family | -1.6 | |
| Pectin from apple | Xcc-8004.336.1 | Alpha/beta hydrolase | -2.4 | |
| Pectin from apple | Xcc-8004.3507.1 | Lipid A export ATP-binding/permease protein MsbA | -1.1 | |
| Pectin from apple | Xcc-8004.4085.1 | Sulfate transport system permease protein CysW | -2.4 | |
| Pectin from apple | Xcc-8004.4087.1 | Sulfate and thiosulfate binding protein CysP | -2.7 | |
| Pectin from apple | Xcc-8004.4314.1 | Phosphoenolpyruvate carboxylase (EC 4.1.1.31) | -1.1 | |
| Pectin from apple | Xcc-8004.4336.1 | 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) | -1.3 | |
| Pectin from apple | Xcc-8004.5048.1 | permease | -1.3 | |
| Pectin from apple | Xcc-8004.5291.1 | Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) | +1.0 | |