Specific Phenotypes for Pseudomonas syringae pv. syringae B728a in carbon source experiments

Condition Gene Description Fitness Cons.
4-Aminobutyric acid Psyr_0090 4-aminobutyrate aminotransferase apoenzyme -3.3 Yes
4-Aminobutyric acid Psyr_0091 succinate semialdehyde dehydrogenase -1.6 Yes
4-Aminobutyric acid Psyr_0232 gamma-glutamylputrescine oxidase -1.2  
4-Aminobutyric acid Psyr_2485 RND efflux system, outer membrane lipoprotein, NodT -1.2  
4-Aminobutyric acid Psyr_4909 gamma-aminobutyrate:proton symporter, AAT family -3.7 Yes
4-hydroxybutyric acid Psyr_0063 Two-component response regulator AlgR -1.0  
4-hydroxybutyric acid Psyr_0173 SSU ribosomal protein S6P modification protein -1.6  
4-hydroxybutyric acid Psyr_0213 RNAse PH +1.4  
4-hydroxybutyric acid Psyr_0286 conserved hypothetical protein -1.7  
4-hydroxybutyric acid Psyr_0317 5-formyltetrahydrofolate cyclo-ligase -3.4  
4-hydroxybutyric acid Psyr_0401 Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+) -3.2  
4-hydroxybutyric acid Psyr_0459 5,10-methylenetetrahydrofolate reductase -1.4  
4-hydroxybutyric acid Psyr_0519 Glutamate-ammonia-ligase adenylyltransferase -1.3  
4-hydroxybutyric acid Psyr_0548 Protein of unknown function DUF1249 -1.9  
4-hydroxybutyric acid Psyr_0648 transporter, putative -1.4  
4-hydroxybutyric acid Psyr_0824 acetyl-CoA acetyltransferase -3.5  
4-hydroxybutyric acid Psyr_0833 conserved hypothetical protein -2.0  
4-hydroxybutyric acid Psyr_0859 Carbonate dehydratase -1.9  
4-hydroxybutyric acid Psyr_1066 PhoH-like protein -2.1  
4-hydroxybutyric acid Psyr_1119 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) -2.3  
4-hydroxybutyric acid Psyr_1254 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase -2.2  
4-hydroxybutyric acid Psyr_1318 Phosphoenolpyruvate carboxylase -4.1  
4-hydroxybutyric acid Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS +1.8  
4-hydroxybutyric acid Psyr_1563 Ribonuclease D -3.2  
4-hydroxybutyric acid Psyr_1585 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal -1.7  
4-hydroxybutyric acid Psyr_1756 Binding-protein-dependent transport systems inner membrane component -1.1  
4-hydroxybutyric acid Psyr_1757 Binding-protein-dependent transport systems inner membrane component -1.4  
4-hydroxybutyric acid Psyr_1962 TonB-dependent siderophore receptor -2.2  
4-hydroxybutyric acid Psyr_2090 phosphoenolpyruvate synthase +1.4  
4-hydroxybutyric acid Psyr_2324 conserved hypothetical protein -2.9  
4-hydroxybutyric acid Psyr_2405 transcriptional regulator, GntR family -1.6  
4-hydroxybutyric acid Psyr_2464 methionine synthase (B12-dependent) -3.0  
4-hydroxybutyric acid Psyr_2483 Acriflavin resistance protein -1.7  
4-hydroxybutyric acid Psyr_2484 Acriflavin resistance protein -1.4  
4-hydroxybutyric acid Psyr_2485 RND efflux system, outer membrane lipoprotein, NodT -1.8  
4-hydroxybutyric acid Psyr_3015 cobaltochelatase CobN subunit -1.8  
4-hydroxybutyric acid Psyr_3196 isocitrate lyase -3.9  
4-hydroxybutyric acid Psyr_3211 ATP-binding region, ATPase-like:Histidine kinase, HAMP region -2.4  
4-hydroxybutyric acid Psyr_3236 transcriptional regulator, LysR family -2.5  
4-hydroxybutyric acid Psyr_3237 3-oxoacid CoA-transferase -3.5  
4-hydroxybutyric acid Psyr_3238 3-oxoacid CoA-transferase -3.4  
4-hydroxybutyric acid Psyr_3275 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) -1.9  
4-hydroxybutyric acid Psyr_3498 Conserved hypothetical protein 730 -1.1  
4-hydroxybutyric acid Psyr_3572 acetyl-coenzyme A synthetase -3.2  
4-hydroxybutyric acid Psyr_4159 RNAse G -1.5  
4-hydroxybutyric acid Psyr_4414 precorrin-3 methyltransferase -2.1  
4-hydroxybutyric acid Psyr_4573 Histidine triad (HIT) protein -1.0  
4-hydroxybutyric acid Psyr_4700 malate synthase -3.7  
Citric Acid Psyr_0198 Citrate transporter variable Yes
Citric Acid Psyr_0232 gamma-glutamylputrescine oxidase -1.3  
Citric Acid Psyr_0359 D-cysteine desulfhydrase variable  
Citric Acid Psyr_0664 ABC transporter -3.1  
Citric Acid Psyr_0665 transport system permease protein variable  
Citric Acid Psyr_0666 transport system permease protein variable  
Citric Acid Psyr_0667 Periplasmic binding protein variable  
Citric Acid Psyr_0726 ribosomal large subunit pseudouridine synthase D -1.5  
Citric Acid Psyr_0821 PTS system D-fructose-specific IIA component (F1P-forming), Frc family / Phosphocarrier protein HPr / phosphoenolpyruvate--protein phosphotransferase -3.7  
Citric Acid Psyr_0823 PTS system D-fructose-specific IIB component (F1P-forming), Frc family / PTS system D-fructose-specific IIC component (F1P-forming), Frc family -2.6  
Citric Acid Psyr_0937 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) variable  
Citric Acid Psyr_1038 TonB-dependent siderophore receptor variable  
Citric Acid Psyr_1040 RNA polymerase sigma factor, ECF subfamily variable  
Citric Acid Psyr_1110 glucokinase variable  
Citric Acid Psyr_1113 glucose-binding protein variable  
Citric Acid Psyr_1114 glucose ABC transporter membrane protein variable  
Citric Acid Psyr_1115 glucose ABC transporter membrane protein variable  
Citric Acid Psyr_1116 glucose ABC transporter ATP-binding protein variable  
Citric Acid Psyr_1117 porin, OprB family +4.0  
Citric Acid Psyr_1599 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A variable  
Citric Acid Psyr_1639 ribosomal large subunit pseudouridine synthase C variable Yes
Citric Acid Psyr_1757 Binding-protein-dependent transport systems inner membrane component -1.2  
Citric Acid Psyr_1899 General substrate transporter:Major facilitator superfamily -3.1  
Citric Acid Psyr_1943 Sigma-70 region 2 variable  
Citric Acid Psyr_1962 TonB-dependent siderophore receptor variable  
Citric Acid Psyr_2072 conserved hypothetical protein variable  
Citric Acid Psyr_2089 Protein of unknown function DUF299 +2.6  
Citric Acid Psyr_2418 shikimate dehydrogenase -2.4  
Citric Acid Psyr_2489 Alpha amylase, catalytic region -2.9  
Citric Acid Psyr_3211 ATP-binding region, ATPase-like:Histidine kinase, HAMP region -2.4  
Citric Acid Psyr_3275 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) variable  
Citric Acid Psyr_3563 arginine succinyltransferase variable  
Citric Acid Psyr_3564 arginine succinyltransferase -2.3  
Citric Acid Psyr_3658 Rhodanese-like protein variable  
Citric Acid Psyr_3917 transcriptional regulator, LysR family -1.5  
Citric Acid Psyr_3939 transcriptional regulator, GntR family variable  
Citric Acid Psyr_3964 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal -2.8  
Citric Acid Psyr_3965 Response regulator receiver:Transcriptional regulatory protein, C-terminal -2.7  
Citric Acid Psyr_3966 Uncharacterized protein UPF0065 variable  
Citric Acid Psyr_3993 Glycoside hydrolase, family 3, N-terminal:Glycoside hydrolase, family 3, C-terminal variable  
Citric Acid Psyr_4029 pyruvate kinase +4.6  
Citric Acid Psyr_4113 LppC putative lipoprotein variable  
Citric Acid Psyr_4507 Inositol monophosphatase -1.3  
Citric Acid Psyr_4575 adenosylmethionine decarboxylase proenzyme -2.0  
Citric Acid Psyr_4789 lipoprotein, putative variable  
Citric Acid Psyr_5060 Oxaloacetate decarboxylase, alpha subunit variable  
Citric Acid Psyr_5061 acetyl-CoA carboxylase carboxyltransferase subunit alpha / biotin carboxylase -3.2  
Citric Acid Psyr_5062 transcriptional regulator, LysR family variable  
D-Gluconic acid Psyr_0410 conserved hypothetical protein +1.6  
D-Gluconic acid Psyr_0843 TPR repeat protein +1.3  
D-Gluconic acid Psyr_1757 Binding-protein-dependent transport systems inner membrane component -1.1  
D-Gluconic acid Psyr_3338 gluconate permease GntT -2.2  
D-Gluconic acid Psyr_3564 arginine succinyltransferase -2.1  
D-Gluconic acid Psyr_3959 L-aspartate oxidase -1.9  
D-Gluconic acid Psyr_4029 pyruvate kinase -1.6  
D-Gluconic acid Psyr_4337 AMP nucleosidase -1.0  
D-Gluconic acid Psyr_5060 Oxaloacetate decarboxylase, alpha subunit -3.1  
D-Gluconic acid Psyr_5061 acetyl-CoA carboxylase carboxyltransferase subunit alpha / biotin carboxylase -3.0  
D-Gluconic acid Psyr_5062 transcriptional regulator, LysR family -3.0  
D-Mannose Psyr_0232 gamma-glutamylputrescine oxidase -2.3  
D-Mannose Psyr_0821 PTS system D-fructose-specific IIA component (F1P-forming), Frc family / Phosphocarrier protein HPr / phosphoenolpyruvate--protein phosphotransferase -4.3 Yes
D-Mannose Psyr_0823 PTS system D-fructose-specific IIB component (F1P-forming), Frc family / PTS system D-fructose-specific IIC component (F1P-forming), Frc family -2.3 Yes
D-Mannose Psyr_1113 glucose-binding protein -1.7 Yes
D-Mannose Psyr_1114 glucose ABC transporter membrane protein -2.2 Yes
D-Mannose Psyr_1115 glucose ABC transporter membrane protein -2.1 Yes
D-Mannose Psyr_1116 glucose ABC transporter ATP-binding protein -1.9 Yes
D-Mannose Psyr_2436 Mannitol dehydrogenase -2.6 Yes
D-Mannose Psyr_2601 regulatory protein, LuxR +2.3  
D-Mannose Psyr_2602 transcriptional regulator, LuxR family +2.2  
D-Mannose Psyr_2607 regulatory protein, LuxR +1.4  
D-Mannose Psyr_3113 N-acylglucosamine 2-epimerase -2.0 Yes
D-Mannose Psyr_3492 L-glutamine synthetase -1.0  
D-Mannose Psyr_3634 transcriptional regulator, TetR family +2.2  
D-Mannose Psyr_4178 tRNA pseudouridine synthase B -2.0  
D-Mannose Psyr_4575 adenosylmethionine decarboxylase proenzyme -1.8  
D-Mannose Psyr_5043 Thioesterase superfamily -1.7  
D-Mannose Psyr_5044 Aldose 1-epimerase -1.4 Yes
D-Mannose Psyr_5060 Oxaloacetate decarboxylase, alpha subunit -2.4  
D-Mannose Psyr_5061 acetyl-CoA carboxylase carboxyltransferase subunit alpha / biotin carboxylase -2.6  
D-Mannose Psyr_5062 transcriptional regulator, LysR family -2.6  
Fumaric acid Psyr_1756 Binding-protein-dependent transport systems inner membrane component -1.1  
Fumaric acid Psyr_1757 Binding-protein-dependent transport systems inner membrane component -1.1  
Fumaric acid Psyr_3561 succinylarginine dihydrolase -1.2  
Fumaric acid Psyr_3564 arginine succinyltransferase -2.7  
Fumaric acid Psyr_3612 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal -1.4  
Fumaric acid Psyr_3615 Aminotransferase, class I and II -2.5  
Fumaric acid Psyr_3707 Sodium:dicarboxylate symporter -1.6 Yes
Fumaric acid Psyr_4113 LppC putative lipoprotein -1.5  
Fumaric acid Psyr_4938 Helix-turn-helix, Fis-type -1.1  
Glycerol Psyr_1969 ABC transporter:Protein of unknown function DUF214 -1.3  
Glycerol Psyr_3211 ATP-binding region, ATPase-like:Histidine kinase, HAMP region -1.4  
Glycerol Psyr_3564 arginine succinyltransferase -1.7  
Glycerol Psyr_3959 L-aspartate oxidase -1.1  
Glycerol Psyr_4029 pyruvate kinase -2.6  
Glycerol Psyr_5060 Oxaloacetate decarboxylase, alpha subunit -2.5  
Glycerol Psyr_5061 acetyl-CoA carboxylase carboxyltransferase subunit alpha / biotin carboxylase -2.7  
Glycerol Psyr_5062 transcriptional regulator, LysR family -2.9  
L-Malic acid Psyr_0054 alginate regulatory protein AlgR3 -1.2  
L-Malic acid Psyr_0232 gamma-glutamylputrescine oxidase -1.2  
L-Malic acid Psyr_0291 DedA +3.0  
L-Malic acid Psyr_0410 conserved hypothetical protein -1.1  
L-Malic acid Psyr_0721 glycine oxidase -1.7  
L-Malic acid Psyr_0937 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) -2.2  
L-Malic acid Psyr_1245 23S rRNA m(2)A-2503 methyltransferase +1.5  
L-Malic acid Psyr_1394 potassium transporter -1.6  
L-Malic acid Psyr_1396 Protein of unknown function DUF470:Protein of unknown function DUF471:Protein of unknown function DUF472 +2.7  
L-Malic acid Psyr_1411 4-hydroxybenzoyl-CoA thioesterase +1.7  
L-Malic acid Psyr_1575 conserved hypothetical protein -2.5  
L-Malic acid Psyr_1599 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A -2.4  
L-Malic acid Psyr_1746 Trigger factor +1.3  
L-Malic acid Psyr_2070 ErfK/YbiS/YcfS/YnhG -2.0  
L-Malic acid Psyr_2072 conserved hypothetical protein -2.0  
L-Malic acid Psyr_2192 transcriptional regulator, TetR family -2.7  
L-Malic acid Psyr_3043 Paraquat-inducible protein A -2.3  
L-Malic acid Psyr_3044 Paraquat-inducible protein A -2.1  
L-Malic acid Psyr_3045 PqiB family protein -2.3  
L-Malic acid Psyr_3046 Protein of unknown function DUF330 -2.3  
L-Malic acid Psyr_3128 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal -2.4  
L-Malic acid Psyr_3563 arginine succinyltransferase -1.8  
L-Malic acid Psyr_3564 arginine succinyltransferase -1.5  
L-Malic acid Psyr_3615 Aminotransferase, class I and II +1.7  
L-Malic acid Psyr_3707 Sodium:dicarboxylate symporter -1.4 Yes
L-Malic acid Psyr_3708 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal -1.5  
L-Malic acid Psyr_3959 L-aspartate oxidase -1.0  
L-Malic acid Psyr_4069 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal -3.7  
L-Malic acid Psyr_4113 LppC putative lipoprotein -5.1  
L-Malic acid Psyr_4117 Stringent starvation protein B -1.2  
L-Malic acid Psyr_4200 Protein of unknown function UPF0125 +1.2  
L-Malic acid Psyr_4229 ABC transporter:ABC transporter, N-terminal -2.2  
L-Malic acid Psyr_4290 conserved domain protein -3.4  
L-Malic acid Psyr_4343 Sel1-like repeat protein +2.8  
L-Malic acid Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB +1.0  
L-Malic acid Psyr_4357 HopAJ2 protein -1.1  
L-Malic acid Psyr_4572 Short-chain dehydrogenase/reductase SDR -1.5  
L-Malic acid Psyr_4575 adenosylmethionine decarboxylase proenzyme -1.7  
L-Malic acid Psyr_4612 Binding-protein-dependent transport systems inner membrane component -1.5  
L-Malic acid Psyr_4613 Binding-protein-dependent transport systems inner membrane component -1.6  
L-Malic acid Psyr_4938 Helix-turn-helix, Fis-type -1.2 Yes
L-Malic acid Psyr_5085 Twin-arginine translocation pathway signal -2.2  
L-Proline Psyr_0232 gamma-glutamylputrescine oxidase -2.0  
L-Proline Psyr_0267 Endonuclease/exonuclease/phosphatase +1.4  
L-Proline Psyr_0459 5,10-methylenetetrahydrofolate reductase -1.0  
L-Proline Psyr_0506 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase -3.5 Yes
L-Proline Psyr_0603 N-acylglucosamine 2-epimerase -1.8  
L-Proline Psyr_0647 Protein of unknown function DUF726 -1.1  
L-Proline Psyr_1962 TonB-dependent siderophore receptor -1.7  
L-Proline Psyr_2090 phosphoenolpyruvate synthase -2.0 Yes
L-Proline Psyr_2974 FAD-dependent pyridine nucleotide-disulfide oxidoreductase -1.2  
L-Proline Psyr_4575 adenosylmethionine decarboxylase proenzyme -1.2  
L-Proline Psyr_4909 gamma-aminobutyrate:proton symporter, AAT family -2.9 Yes
Succinic Acid Psyr_1119 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) -1.0  
Succinic Acid Psyr_1266 Twin-arginine translocation pathway signal -1.1  
Succinic Acid Psyr_1756 Binding-protein-dependent transport systems inner membrane component -1.1  
Succinic Acid Psyr_1757 Binding-protein-dependent transport systems inner membrane component -1.3  
Succinic Acid Psyr_3561 succinylarginine dihydrolase -1.2  
Succinic Acid Psyr_3563 arginine succinyltransferase -1.8  
Succinic Acid Psyr_3564 arginine succinyltransferase -2.3  
Succinic Acid Psyr_3615 Aminotransferase, class I and II -2.0  
Succinic Acid Psyr_3707 Sodium:dicarboxylate symporter -2.1 Yes
Sucrose Psyr_0232 gamma-glutamylputrescine oxidase -1.1  
Sucrose Psyr_0759 carbohydrate ABC transporter ATP-binding protein, CUT1 family -1.3 Yes
Sucrose Psyr_0761 carbohydrate ABC transporter membrane protein 1, CUT1 family -1.4 Yes
Sucrose Psyr_0762 carbohydrate ABC transporter substrate-binding protein, CUT1 family -1.1 Yes
Sucrose Psyr_2021 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal +1.2  
Sucrose Psyr_2601 regulatory protein, LuxR +1.6  
Sucrose Psyr_2602 transcriptional regulator, LuxR family +1.4  
Sucrose Psyr_2605 transposase, putative +1.2  
Sucrose Psyr_3634 transcriptional regulator, TetR family +1.3  
Sucrose Psyr_3959 L-aspartate oxidase -1.4  
Sucrose Psyr_4029 pyruvate kinase -1.6  
Sucrose Psyr_5060 Oxaloacetate decarboxylase, alpha subunit -2.1  
Sucrose Psyr_5061 acetyl-CoA carboxylase carboxyltransferase subunit alpha / biotin carboxylase -1.9  
a-Ketoglutaric acid disodium salt hydrate Psyr_0401 Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+) -1.8  
a-Ketoglutaric acid disodium salt hydrate Psyr_0603 N-acylglucosamine 2-epimerase -1.7  
a-Ketoglutaric acid disodium salt hydrate Psyr_3275 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) -1.2  
a-Ketoglutaric acid disodium salt hydrate Psyr_3561 succinylarginine dihydrolase -1.4  
a-Ketoglutaric acid disodium salt hydrate Psyr_3563 arginine succinyltransferase -2.6  
a-Ketoglutaric acid disodium salt hydrate Psyr_3564 arginine succinyltransferase -1.9  
a-Ketoglutaric acid disodium salt hydrate Psyr_3612 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal -1.1  
a-Ketoglutaric acid disodium salt hydrate Psyr_3994 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal -2.8 Yes
a-Ketoglutaric acid disodium salt hydrate Psyr_3999 General substrate transporter:Major facilitator superfamily -3.0 Yes
a-Ketoglutaric acid disodium salt hydrate Psyr_4178 tRNA pseudouridine synthase B -1.5  
a-Ketoglutaric acid disodium salt hydrate Psyr_4228 transcriptional regulator, GntR family -1.1