| Condition | Gene | Description | Fitness | Cons. |
|---|
| D-Glucose | EX31_RS05060 | gluconate operon transcriptional repressor GntR | -1.1 | |
| D-Glucose | EX31_RS16350 | DsbA family protein | +2.1 | |
| D-Mannitol | EX31_RS03920 | transaldolase | -1.6 | |
| D-Mannitol | EX31_RS05010 | glycogen synthase GlgA | -1.6 | |
| D-Mannitol | EX31_RS05830 | PTS mannitol transporter subunit IICBA | -2.7 | Yes |
| D-Mannitol | EX31_RS05910 | LacI family DNA-binding transcriptional regulator | -1.4 | |
| D-Mannitol | EX31_RS10635 | MurR/RpiR family transcriptional regulator | -1.0 | |
| D-Mannitol | EX31_RS13935 | phosphoenolpyruvate synthase | -2.7 | |
| D-Mannitol | EX31_RS16350 | DsbA family protein | +3.3 | |
| D-Mannitol | EX31_RS16355 | hypothetical protein | +2.2 | |
| D-Mannitol | EX31_RS18105 | sulfonate ABC transporter substrate-binding protein | -1.1 | |
| D-Mannitol | EX31_RS18110 | FMNH2-dependent alkanesulfonate monooxygenase | -1.5 | |
| D-Xylose | EX31_RS03655 | catabolite repressor/activator | -1.3 | |
| D-Xylose | EX31_RS03660 | acetolactate synthase small subunit | -2.6 | |
| D-Xylose | EX31_RS03665 | acetolactate synthase 3 large subunit | -2.3 | |
| D-Xylose | EX31_RS03920 | transaldolase | -3.0 | |
| D-Xylose | EX31_RS05010 | glycogen synthase GlgA | -1.8 | |
| D-Xylose | EX31_RS05060 | gluconate operon transcriptional repressor GntR | -1.1 | |
| D-Xylose | EX31_RS05270 | carbonic anhydrase | -2.4 | |
| D-Xylose | EX31_RS09745 | XylR family transcriptional regulator | -3.3 | Yes |
| D-Xylose | EX31_RS09765 | xylose isomerase | -3.5 | Yes |
| D-Xylose | EX31_RS09770 | xylulokinase | -3.3 | Yes |
| D-Xylose | EX31_RS12520 | aerobic respiration two-component sensor histidine kinase ArcB | -1.5 | |
| D-Xylose | EX31_RS15035 | guanosine-5'-triphosphate,3'-diphosphate diphosphatase | -1.1 | |
| D-Xylose | EX31_RS15150 | class I adenylate cyclase | -2.5 | |
| D-Xylose | EX31_RS16350 | DsbA family protein | +1.9 | |
| D-Xylose | EX31_RS23435 | succinate dehydrogenase iron-sulfur subunit | -1.8 | |
| D-Xylose | EX31_RS24400 | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | -1.0 | |
| NLDM_metabolites | EX31_RS01085 | ATP-binding cassette domain-containing protein | +1.9 | |
| NLDM_metabolites | EX31_RS09475 | AraC family transcriptional regulator | +1.4 | |
| NLDM_metabolites | EX31_RS12520 | aerobic respiration two-component sensor histidine kinase ArcB | -1.6 | |
| NLDM_metabolites | EX31_RS21825 | elongation factor 4 | -1.8 | |
| NLDM_metabolites | EX31_RS23430 | succinate dehydrogenase flavoprotein subunit | +1.5 | |
| Sodium D,L-Lactate | EX31_RS00640 | FMN-dependent L-lactate dehydrogenase LldD | -3.7 | Yes |
| Sodium D,L-Lactate | EX31_RS01075 | manganese-binding transcriptional regulator MntR | -2.5 | |
| Sodium D,L-Lactate | EX31_RS03010 | helix-turn-helix domain-containing protein | -1.7 | |
| Sodium D,L-Lactate | EX31_RS03655 | catabolite repressor/activator | -3.7 | |
| Sodium D,L-Lactate | EX31_RS04995 | DeoR/GlpR family transcriptional regulator | +1.2 | |
| Sodium D,L-Lactate | EX31_RS05335 | transcriptional regulator EbgR | -2.0 | |
| Sodium D,L-Lactate | EX31_RS05820 | MltR family transcriptional regulator | +1.6 | |
| Sodium D,L-Lactate | EX31_RS06190 | ribokinase | +1.0 | |
| Sodium D,L-Lactate | EX31_RS06195 | ribose operon transcriptional repressor RbsR | +2.0 | |
| Sodium D,L-Lactate | EX31_RS06255 | YeaH/YhbH family protein | +1.4 | |
| Sodium D,L-Lactate | EX31_RS06260 | protein kinase YeaG | +1.5 | |
| Sodium D,L-Lactate | EX31_RS06660 | arabinose operon transcriptional regulator AraC | +1.5 | |
| Sodium D,L-Lactate | EX31_RS08645 | malate dehydrogenase | -3.5 | |
| Sodium D,L-Lactate | EX31_RS08670 | class 1 fructose-bisphosphatase | -4.1 | |
| Sodium D,L-Lactate | EX31_RS08820 | RNA chaperone Hfq | +5.0 | |
| Sodium D,L-Lactate | EX31_RS09040 | acetate--CoA ligase | -3.3 | |
| Sodium D,L-Lactate | EX31_RS09045 | DUF485 domain-containing protein | -5.2 | |
| Sodium D,L-Lactate | EX31_RS09050 | cation/acetate symporter ActP | -2.8 | |
| Sodium D,L-Lactate | EX31_RS10500 | SpoVR family protein | +1.6 | |
| Sodium D,L-Lactate | EX31_RS11755 | glyoxylate bypass operon transcriptional repressor IclR | +2.4 | |
| Sodium D,L-Lactate | EX31_RS13240 | HTH-type transcriptional regulator GalR | -2.6 | |
| Sodium D,L-Lactate | EX31_RS13495 | FAD assembly factor SdhE | -3.3 | |
| Sodium D,L-Lactate | EX31_RS13935 | phosphoenolpyruvate synthase | -3.5 | Yes |
| Sodium D,L-Lactate | EX31_RS15075 | dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase | +1.2 | |
| Sodium D,L-Lactate | EX31_RS18560 | ATP-dependent Clp protease ATP-binding subunit ClpA | -1.2 | |
| Sodium D,L-Lactate | EX31_RS20760 | MurR/RpiR family transcriptional regulator | +1.4 | |
| Sodium D,L-Lactate | EX31_RS20985 | sigma factor-binding protein Crl | +1.1 | |
| Sodium D,L-Lactate | EX31_RS22170 | tRNA 4-thiouridine(8) synthase ThiI | +1.1 | |
| Sodium D,L-Lactate | EX31_RS22680 | polyphosphate kinase 1 | -2.2 | |
| Sodium D,L-Lactate | EX31_RS23430 | succinate dehydrogenase flavoprotein subunit | -2.9 | |
| Sodium D,L-Lactate | EX31_RS23825 | D-lactate dehydrogenase | -1.3 | |
| Sucrose | EX31_RS00425 | sucrose-6-phosphate hydrolase | -2.2 | Yes |
| Sucrose | EX31_RS00430 | PTS sucrose transporter subunit IIBC | -2.3 | |
| Sucrose | EX31_RS04775 | Hsp33 family molecular chaperone HslO | -1.6 | |
| Sucrose | EX31_RS16350 | DsbA family protein | +2.9 | |
| casamino acids | EX31_RS02505 | hypothetical protein | +3.5 | |
| casamino acids | EX31_RS02540 | helix-turn-helix transcriptional regulator | +3.8 | |
| casamino acids | EX31_RS02550 | MATE family efflux transporter | +1.2 | |
| casamino acids | EX31_RS03655 | catabolite repressor/activator | -2.4 | |
| casamino acids | EX31_RS08670 | class 1 fructose-bisphosphatase | -2.6 | Yes |
| casamino acids | EX31_RS08965 | aspartate ammonia-lyase | -2.5 | |
| casamino acids | EX31_RS12485 | cell division protein ZapE | -1.1 | Yes |
| casamino acids | EX31_RS13935 | phosphoenolpyruvate synthase | -1.9 | |
| casamino acids | EX31_RS13945 | 3-deoxy-7-phosphoheptulonate synthase | -3.9 | Yes |
| casamino acids | EX31_RS14165 | Si-specific NAD(P)(+) transhydrogenase | -2.5 | |
| casamino acids | EX31_RS15150 | class I adenylate cyclase | -1.8 | |
| casamino acids | EX31_RS23430 | succinate dehydrogenase flavoprotein subunit | -2.1 | |
| casamino acids | EX31_RS23435 | succinate dehydrogenase iron-sulfur subunit | -2.1 | |