Specific Phenotypes for Rahnella sp. WP5 in carbon source experiments

Condition Gene Description Fitness Cons.
D-Glucose EX31_RS05060 gluconate operon transcriptional repressor GntR -1.1  
D-Glucose EX31_RS16350 DsbA family protein +2.1  
D-Mannitol EX31_RS03920 transaldolase -1.6  
D-Mannitol EX31_RS05010 glycogen synthase GlgA -1.6  
D-Mannitol EX31_RS05830 PTS mannitol transporter subunit IICBA -2.7 Yes
D-Mannitol EX31_RS05910 LacI family DNA-binding transcriptional regulator -1.4  
D-Mannitol EX31_RS10635 MurR/RpiR family transcriptional regulator -1.0  
D-Mannitol EX31_RS13935 phosphoenolpyruvate synthase -2.7  
D-Mannitol EX31_RS16350 DsbA family protein +3.3  
D-Mannitol EX31_RS16355 hypothetical protein +2.2  
D-Mannitol EX31_RS18105 sulfonate ABC transporter substrate-binding protein -1.1  
D-Mannitol EX31_RS18110 FMNH2-dependent alkanesulfonate monooxygenase -1.5  
D-Xylose EX31_RS03655 catabolite repressor/activator -1.3  
D-Xylose EX31_RS03660 acetolactate synthase small subunit -2.6  
D-Xylose EX31_RS03665 acetolactate synthase 3 large subunit -2.3  
D-Xylose EX31_RS03920 transaldolase -3.0  
D-Xylose EX31_RS05010 glycogen synthase GlgA -1.8  
D-Xylose EX31_RS05060 gluconate operon transcriptional repressor GntR -1.1  
D-Xylose EX31_RS05270 carbonic anhydrase -2.4  
D-Xylose EX31_RS09745 XylR family transcriptional regulator -3.3 Yes
D-Xylose EX31_RS09765 xylose isomerase -3.5 Yes
D-Xylose EX31_RS09770 xylulokinase -3.3 Yes
D-Xylose EX31_RS12520 aerobic respiration two-component sensor histidine kinase ArcB -1.5  
D-Xylose EX31_RS15035 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -1.1  
D-Xylose EX31_RS15150 class I adenylate cyclase -2.5  
D-Xylose EX31_RS16350 DsbA family protein +1.9  
D-Xylose EX31_RS23435 succinate dehydrogenase iron-sulfur subunit -1.8  
D-Xylose EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC -1.0  
NLDM_metabolites EX31_RS01085 ATP-binding cassette domain-containing protein +1.9  
NLDM_metabolites EX31_RS09475 AraC family transcriptional regulator +1.4  
NLDM_metabolites EX31_RS12520 aerobic respiration two-component sensor histidine kinase ArcB -1.6  
NLDM_metabolites EX31_RS21825 elongation factor 4 -1.8  
NLDM_metabolites EX31_RS23430 succinate dehydrogenase flavoprotein subunit +1.5  
Sodium D,L-Lactate EX31_RS00640 FMN-dependent L-lactate dehydrogenase LldD -3.7 Yes
Sodium D,L-Lactate EX31_RS01075 manganese-binding transcriptional regulator MntR -2.5  
Sodium D,L-Lactate EX31_RS03010 helix-turn-helix domain-containing protein -1.7  
Sodium D,L-Lactate EX31_RS03655 catabolite repressor/activator -3.7  
Sodium D,L-Lactate EX31_RS04995 DeoR/GlpR family transcriptional regulator +1.2  
Sodium D,L-Lactate EX31_RS05335 transcriptional regulator EbgR -2.0  
Sodium D,L-Lactate EX31_RS05820 MltR family transcriptional regulator +1.6  
Sodium D,L-Lactate EX31_RS06190 ribokinase +1.0  
Sodium D,L-Lactate EX31_RS06195 ribose operon transcriptional repressor RbsR +2.0  
Sodium D,L-Lactate EX31_RS06255 YeaH/YhbH family protein +1.4  
Sodium D,L-Lactate EX31_RS06260 protein kinase YeaG +1.5  
Sodium D,L-Lactate EX31_RS06660 arabinose operon transcriptional regulator AraC +1.5  
Sodium D,L-Lactate EX31_RS08645 malate dehydrogenase -3.5  
Sodium D,L-Lactate EX31_RS08670 class 1 fructose-bisphosphatase -4.1  
Sodium D,L-Lactate EX31_RS08820 RNA chaperone Hfq +5.0  
Sodium D,L-Lactate EX31_RS09040 acetate--CoA ligase -3.3  
Sodium D,L-Lactate EX31_RS09045 DUF485 domain-containing protein -5.2  
Sodium D,L-Lactate EX31_RS09050 cation/acetate symporter ActP -2.8  
Sodium D,L-Lactate EX31_RS10500 SpoVR family protein +1.6  
Sodium D,L-Lactate EX31_RS11755 glyoxylate bypass operon transcriptional repressor IclR +2.4  
Sodium D,L-Lactate EX31_RS13240 HTH-type transcriptional regulator GalR -2.6  
Sodium D,L-Lactate EX31_RS13495 FAD assembly factor SdhE -3.3  
Sodium D,L-Lactate EX31_RS13935 phosphoenolpyruvate synthase -3.5 Yes
Sodium D,L-Lactate EX31_RS15075 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase +1.2  
Sodium D,L-Lactate EX31_RS18560 ATP-dependent Clp protease ATP-binding subunit ClpA -1.2  
Sodium D,L-Lactate EX31_RS20760 MurR/RpiR family transcriptional regulator +1.4  
Sodium D,L-Lactate EX31_RS20985 sigma factor-binding protein Crl +1.1  
Sodium D,L-Lactate EX31_RS22170 tRNA 4-thiouridine(8) synthase ThiI +1.1  
Sodium D,L-Lactate EX31_RS22680 polyphosphate kinase 1 -2.2  
Sodium D,L-Lactate EX31_RS23430 succinate dehydrogenase flavoprotein subunit -2.9  
Sodium D,L-Lactate EX31_RS23825 D-lactate dehydrogenase -1.3  
Sucrose EX31_RS00425 sucrose-6-phosphate hydrolase -2.2 Yes
Sucrose EX31_RS00430 PTS sucrose transporter subunit IIBC -2.3  
Sucrose EX31_RS04775 Hsp33 family molecular chaperone HslO -1.6  
Sucrose EX31_RS16350 DsbA family protein +2.9  
casamino acids EX31_RS02505 hypothetical protein +3.5  
casamino acids EX31_RS02540 helix-turn-helix transcriptional regulator +3.8  
casamino acids EX31_RS02550 MATE family efflux transporter +1.2  
casamino acids EX31_RS03655 catabolite repressor/activator -2.4  
casamino acids EX31_RS08670 class 1 fructose-bisphosphatase -2.6 Yes
casamino acids EX31_RS08965 aspartate ammonia-lyase -2.5  
casamino acids EX31_RS12485 cell division protein ZapE -1.1 Yes
casamino acids EX31_RS13935 phosphoenolpyruvate synthase -1.9  
casamino acids EX31_RS13945 3-deoxy-7-phosphoheptulonate synthase -3.9 Yes
casamino acids EX31_RS14165 Si-specific NAD(P)(+) transhydrogenase -2.5  
casamino acids EX31_RS15150 class I adenylate cyclase -1.8  
casamino acids EX31_RS23430 succinate dehydrogenase flavoprotein subunit -2.1  
casamino acids EX31_RS23435 succinate dehydrogenase iron-sulfur subunit -2.1