Specific Phenotypes for Parabacteroides merdae CL09T00C40 in carbon source experiments

Condition Gene Description Fitness Cons.
.-Glucan from yeast HMPREF1078_RS13455 DsbA family protein -3.4  
D-Glucose HMPREF1078_RS01480 nucleoside-diphosphate sugar epimerase/dehydratase -1.6  
D-Glucose HMPREF1078_RS01485 endonuclease/exonuclease/phosphatase family protein -1.8  
D-Glucose HMPREF1078_RS03830 Helicase associated domain protein +1.5  
D-Glucose HMPREF1078_RS10675 AMP-binding protein -1.2  
D-Glucose HMPREF1078_RS12065 START-like domain-containing protein -1.5  
D-Maltose monohydrate HMPREF1078_RS01070 DUF4925 domain-containing protein -1.2  
D-Maltose monohydrate HMPREF1078_RS07420 energy-dependent translational throttle protein EttA -1.2  
D-Maltose monohydrate HMPREF1078_RS11295 regulatory protein RecX -2.0  
D-Maltose monohydrate HMPREF1078_RS12890 heavy metal-binding domain-containing protein +1.6  
D-Maltose monohydrate HMPREF1078_RS13225 DUF6340 family protein variable  
D-Maltose monohydrate HMPREF1078_RS14900 S41 family peptidase +1.1  
D-Maltose monohydrate HMPREF1078_RS15820 TetR/AcrR family transcriptional regulator +1.3  
D-Maltose monohydrate HMPREF1078_RS17655 trypsin-like peptidase domain-containing protein +3.1  
D-Xylose HMPREF1078_RS00445 NUDIX domain-containing protein -5.0 Yes
D-Xylose HMPREF1078_RS00450 FGGY family carbohydrate kinase -5.5 Yes
D-Xylose HMPREF1078_RS00455 xylose isomerase -6.2 Yes
D-Xylose HMPREF1078_RS00460 D-xylose transporter XylE -2.2 Yes
D-Xylose HMPREF1078_RS01670 HAMP domain-containing sensor histidine kinase -1.5  
D-Xylose HMPREF1078_RS04375 hypothetical protein -1.4  
D-Xylose HMPREF1078_RS08455 carboxylase +1.4  
D-Xylose HMPREF1078_RS09985 substrate-binding domain-containing protein -1.7  
D-Xylose HMPREF1078_RS17220 TIGR04133 family radical SAM/SPASM protein -2.0  
Dextrin from potato starch HMPREF1078_RS06930 DUF5668 domain-containing protein +2.1  
Dextrin from potato starch HMPREF1078_RS06935 LytTR family DNA-binding domain-containing protein +1.8  
N-Acetyl-D-Glucosamine HMPREF1078_RS01485 endonuclease/exonuclease/phosphatase family protein -1.5  
N-Acetyl-D-Glucosamine HMPREF1078_RS03865 hypothetical protein +1.1  
N-Acetyl-D-Glucosamine HMPREF1078_RS03935 acyltransferase +1.0  
Pectin from citrus peel HMPREF1078_RS11865 RagB/SusD family nutrient uptake outer membrane protein -1.5  
Pectin from citrus peel HMPREF1078_RS11870 TonB-dependent receptor -1.7  
Pectin from citrus peel HMPREF1078_RS11925 RNA polymerase sigma-70 factor -2.4  
Sucrose HMPREF1078_RS00660 HU family DNA-binding protein +1.3  
Sucrose HMPREF1078_RS01290 hypothetical protein +1.6  
Sucrose HMPREF1078_RS01630 YjbH domain-containing protein +2.6  
Sucrose HMPREF1078_RS02480 mechanosensitive ion channel -1.6  
Sucrose HMPREF1078_RS06205 ROK family transcriptional regulator -1.8  
Sucrose HMPREF1078_RS09985 substrate-binding domain-containing protein -1.6  
Sucrose HMPREF1078_RS12065 START-like domain-containing protein -1.5  
Sucrose HMPREF1078_RS12805 glycoside hydrolase family 76 protein -1.5  
Sucrose HMPREF1078_RS12835 S41 family peptidase +1.2  
Sucrose HMPREF1078_RS12890 heavy metal-binding domain-containing protein +2.5  
Sucrose HMPREF1078_RS13170 hypothetical protein -1.4  
Sucrose HMPREF1078_RS13720 family 10 glycosylhydrolase -1.4  
Sucrose HMPREF1078_RS14440 phosphatase PAP2 family protein -1.9  
Sucrose HMPREF1078_RS14940 hypothetical protein -1.7  
Sucrose HMPREF1078_RS15155 hybrid sensor histidine kinase/response regulator transcription factor -1.0  
Sucrose HMPREF1078_RS17140 hypothetical protein +1.6  
Xylan from corncob HMPREF1078_RS00445 NUDIX domain-containing protein -2.8  
Xylan from corncob HMPREF1078_RS00450 FGGY family carbohydrate kinase -3.6  
Xylan from corncob HMPREF1078_RS00455 xylose isomerase -3.1  
Xylan from corncob HMPREF1078_RS00460 D-xylose transporter XylE -1.8  
Xylan from corncob HMPREF1078_RS03625 TldD/PmbA family protein +1.3  
Xylan from corncob HMPREF1078_RS06910 head GIN domain-containing protein -1.3