Specific Phenotypes for Pantoea sp. MT58 in carbon source experiments

Condition Gene Description Fitness Cons.
Ying_AminoAcid20 IAI47_00335 two-component system sensor histidine kinase QseC -1.6  
Ying_AminoAcid20 IAI47_00595 ribonuclease PH -1.3  
Ying_AminoAcid20 IAI47_00810 ferredoxin--NADP(+) reductase -1.5  
Ying_AminoAcid20 IAI47_03475 cytochrome d ubiquinol oxidase subunit II -1.1  
Ying_AminoAcid20 IAI47_04105 glycerate kinase -3.5  
Ying_AminoAcid20 IAI47_04225 protein-L-isoaspartate(D-aspartate) O-methyltransferase -1.7  
Ying_AminoAcid20 IAI47_04485 thioredoxin TrxC +1.1  
Ying_AminoAcid20 IAI47_05330 L-asparagine permease -1.7  
Ying_AminoAcid20 IAI47_06755 NAD-dependent malic enzyme -1.8  
Ying_AminoAcid20 IAI47_08195 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase -2.4 Yes
Ying_AminoAcid20 IAI47_08205 sodium/proline symporter PutP -1.4 Yes
Ying_AminoAcid20 IAI47_08290 flagellar motor stator protein MotA +1.4  
Ying_AminoAcid20 IAI47_08785 L-serine ammonia-lyase -1.8  
Ying_AminoAcid20 IAI47_08965 asparaginase -2.2  
Ying_AminoAcid20 IAI47_10335 class II fumarate hydratase -1.1 Yes
Ying_AminoAcid20 IAI47_10905 phosphoenolpyruvate synthase -2.8  
Ying_AminoAcid20 IAI47_11080 N-succinylarginine dihydrolase -1.0  
Ying_AminoAcid20 IAI47_11215 type VI secretion system-associated FHA domain protein TagH +1.4  
Ying_AminoAcid20 IAI47_11705 aldehyde dehydrogenase -1.4  
Ying_AminoAcid20 IAI47_13255 imidazolonepropionase -1.6  
Ying_AminoAcid20 IAI47_13260 formimidoylglutamate deiminase -2.1 Yes
Ying_AminoAcid20 IAI47_14670 hypothetical protein -1.9  
Ying_AminoAcid20 IAI47_18505 UDP-N-acetyl-D-mannosamine dehydrogenase -1.6  
Ying_AminoAcid20 IAI47_18510 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) -1.4  
Ying_AminoAcid20 IAI47_19450 hypothetical protein -2.0  
Ying_AminoAcid20 IAI47_20895 LacI family DNA-binding transcriptional regulator -1.6  
Ying_Nucleobase14 IAI47_00810 ferredoxin--NADP(+) reductase variable  
Ying_Nucleobase14 IAI47_00860 DNA-binding transcriptional regulator CytR +2.9 Yes
Ying_Nucleobase14 IAI47_01930 MFS transporter TsgA -2.7  
Ying_Nucleobase14 IAI47_03410 phosphopentomutase -4.5 Yes
Ying_Nucleobase14 IAI47_03415 purine-nucleoside phosphorylase -3.8 Yes
Ying_Nucleobase14 IAI47_05530 NupC/NupG family nucleoside CNT transporter -3.3 Yes
Ying_Nucleobase14 IAI47_06730 HTH-type transcriptional regulator GalS -1.7 Yes
Ying_Nucleobase14 IAI47_06805 hydroxyethylthiazole kinase -1.9  
Ying_Nucleobase14 IAI47_06810 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -3.0  
Ying_Nucleobase14 IAI47_08460 zinc ABC transporter ATP-binding protein ZnuC +1.9  
Ying_Nucleobase14 IAI47_09575 universal stress protein UspE -1.5  
Ying_Nucleobase14 IAI47_10365 adenosine deaminase -1.7  
Ying_Nucleobase14 IAI47_10800 LysR family transcriptional regulator -1.6  
Ying_Nucleobase14 IAI47_10805 Bcr/CflA family multidrug efflux MFS transporter -1.6 Yes
Ying_Nucleobase14 IAI47_14670 hypothetical protein variable  
Ying_Nucleobase14 IAI47_16320 DNA-binding transcriptional repressor DeoR +1.5  
Ying_Nucleobase14 IAI47_18090 thiamine phosphate synthase -2.9  
Ying_Nucleobase14 IAI47_18300 uridine phosphorylase -3.4 Yes
Ying_Nucleobase14 IAI47_20695 HesA/MoeB/ThiF family protein variable  
Ying_Nucleobase14 IAI47_20700 thiazole synthase -3.0  
Ying_Nucleobase14 IAI47_20710 FAD-dependent oxidoreductase -2.4  
Ying_OrganicAcid7 IAI47_01020 acetolactate synthase 2 catalytic subunit -3.0  
Ying_OrganicAcid7 IAI47_01025 acetolactate synthase 2 small subunit -3.4  
Ying_OrganicAcid7 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) -1.7  
Ying_OrganicAcid7 IAI47_02365 amino acid ABC transporter permease +1.2  
Ying_OrganicAcid7 IAI47_02375 amino acid ABC transporter substrate-binding protein +1.0  
Ying_OrganicAcid7 IAI47_03715 LysR family transcriptional regulator ArgP -2.0  
Ying_OrganicAcid7 IAI47_04225 protein-L-isoaspartate(D-aspartate) O-methyltransferase -1.9  
Ying_OrganicAcid7 IAI47_06200 tripartite tricarboxylate transporter permease -1.1  
Ying_OrganicAcid7 IAI47_06205 tripartite tricarboxylate transporter TctB family protein -1.1  
Ying_OrganicAcid7 IAI47_06210 tripartite tricarboxylate transporter substrate binding protein -1.2  
Ying_OrganicAcid7 IAI47_06215 transcriptional regulator TctD -1.1  
Ying_OrganicAcid7 IAI47_06220 sensor histidine kinase -1.2  
Ying_OrganicAcid7 IAI47_08955 DUF1315 family protein -1.5  
Ying_OrganicAcid7 IAI47_09215 cob(I)yrinic acid a,c-diamide adenosyltransferase -1.2  
Ying_OrganicAcid7 IAI47_10905 phosphoenolpyruvate synthase -1.5 Yes
Ying_OrganicAcid7 IAI47_12765 aspartate/tyrosine/aromatic aminotransferase variable  
Ying_OrganicAcid7 IAI47_14670 hypothetical protein -1.4  
Ying_OrganicAcid7 IAI47_17525 tartrate dehydrogenase -1.0  
Ying_OrganicAcid7 IAI47_18585 dicarboxylate/amino acid:cation symporter -2.7 Yes
Ying_OrganicAcid7 IAI47_20415 two-component system response regulator DcuR -1.8 Yes
Ying_Others16 IAI47_00290 F0F1 ATP synthase subunit I -1.9  
Ying_Others16 IAI47_00885 bifunctional aspartate kinase/homoserine dehydrogenase II -1.5  
Ying_Others16 IAI47_01325 glutathione-disulfide reductase +1.6  
Ying_Others16 IAI47_01915 phosphoglycolate phosphatase variable  
Ying_Others16 IAI47_01975 phosphoribulokinase -1.1  
Ying_Others16 IAI47_03455 alpha,alpha-trehalase TreF -1.3  
Ying_Others16 IAI47_03920 phosphoenolpyruvate--protein phosphotransferase +1.9  
Ying_Others16 IAI47_04025 transcriptional regulator GcvA +1.5  
Ying_Others16 IAI47_04225 protein-L-isoaspartate(D-aspartate) O-methyltransferase -2.0  
Ying_Others16 IAI47_04575 spermidine N1-acetyltransferase -3.8 Yes
Ying_Others16 IAI47_04910 MurR/RpiR family transcriptional regulator +2.6  
Ying_Others16 IAI47_05255 thioredoxin-dependent thiol peroxidase +1.5  
Ying_Others16 IAI47_06755 NAD-dependent malic enzyme -2.7  
Ying_Others16 IAI47_08915 potassium/proton antiporter +1.2  
Ying_Others16 IAI47_09575 universal stress protein UspE variable  
Ying_Others16 IAI47_09590 LysR family transcriptional regulator variable Yes
Ying_Others16 IAI47_10905 phosphoenolpyruvate synthase -1.8  
Ying_Others16 IAI47_11075 succinylglutamate desuccinylase -4.1  
Ying_Others16 IAI47_11085 succinylglutamate-semialdehyde dehydrogenase -3.7  
Ying_Others16 IAI47_11090 arginine N-succinyltransferase -1.8  
Ying_Others16 IAI47_11095 aspartate aminotransferase family protein -1.4  
Ying_Others16 IAI47_12055 aminodeoxychorismate lyase -1.7  
Ying_Others16 IAI47_13375 D-lactate dehydrogenase -1.5  
Ying_Others16 IAI47_16245 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB +1.4  
Ying_Others16 IAI47_16865 aspartate carbamoyltransferase regulatory subunit -1.8  
Ying_Others16 IAI47_17635 amidohydrolase -1.1  
Ying_Others16 IAI47_17695 PTS N-acetylmuramic acid transporter subunit IIBC -4.1  
Ying_Others16 IAI47_17700 N-acetylmuramic acid 6-phosphate etherase -4.2  
Ying_Others16 IAI47_17715 acetate--CoA ligase -1.9  
Ying_Others16 IAI47_18375 EamA family transporter RarD -1.8  
Ying_Others16 IAI47_19475 4-aminobutyrate--2-oxoglutarate transaminase -1.1  
Ying_Others16 IAI47_21330 aldehyde dehydrogenase family protein -1.9  
Ying_all64 IAI47_00370 ribokinase -1.3  
Ying_all64 IAI47_07895 hypothetical protein -1.5  
Ying_all64 IAI47_11950 NAD-dependent protein deacylase -1.6  
Ying_all64 IAI47_12480 autoinducer synthase -1.5  
Ying_all64 IAI47_12495 D-serine/D-alanine/glycine transporter -1.9 Yes
Ying_sugar7 IAI47_00595 ribonuclease PH -1.3 Yes
Ying_sugar7 IAI47_01815 hypothetical protein variable  
Ying_sugar7 IAI47_02465 metalloprotease TldD -2.0  
Ying_sugar7 IAI47_02765 metalloprotease PmbA -1.8  
Ying_sugar7 IAI47_03555 oxidative damage protection protein -1.5  
Ying_sugar7 IAI47_07895 hypothetical protein -2.5  
Ying_sugar7 IAI47_09300 crotonase/enoyl-CoA hydratase family protein -1.7  
Ying_sugar7 IAI47_09840 glycosyltransferase family 4 protein variable  
Ying_sugar7 IAI47_12480 autoinducer synthase -2.4  
Ying_sugar7 IAI47_12935 leucyl/phenylalanyl-tRNA--protein transferase -1.6  
Ying_sugar7 IAI47_12950 ATP-dependent Clp protease adapter ClpS -1.3  
Ying_sugar7 IAI47_16400 GGDEF domain-containing protein -1.4  
Ying_sugar7 IAI47_16955 N-acetyltransferase -1.5  
Ying_sugar7 IAI47_17780 hypothetical protein -1.3  
Ying_sugar7 IAI47_17785 oligosaccharide flippase family protein -1.3  
Ying_sugar7 IAI47_18675 MarR family transcriptional regulator -2.0