Specific Phenotypes for Lysobacter sp. OAE881 in carbon source experiments

Condition	Gene	Description	Fitness	Cons.
D-Cellobiose	ABIE51_RS04855	ATP-binding protein	-2.2
D-Cellobiose	ABIE51_RS08800	LacI family DNA-binding transcriptional regulator	+1.0
D-Cellobiose	ABIE51_RS10155	LacI family DNA-binding transcriptional regulator	+1.7
D-Cellobiose	ABIE51_RS13700	MurR/RpiR family transcriptional regulator	+1.3
D-Galactose	ABIE51_RS09530	pyruvate, water dikinase regulatory protein	-1.7
D-Galactose	ABIE51_RS18840	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-1.9	Yes
D-Glucose-6-Phosphate sodium salt	ABIE51_RS04500	DsbC family protein	-1.6
D-Glucose-6-Phosphate sodium salt	ABIE51_RS17620	phosphatase PAP2 family protein	-2.1
D-Glucose-6-Phosphate sodium salt	ABIE51_RS18840	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-2.2
D-Maltose monohydrate	ABIE51_RS18975	LacI family DNA-binding transcriptional regulator	-1.5	Yes
D-Maltose monohydrate	ABIE51_RS18985	MFS transporter	-1.6	Yes
L-Malic acid disodium salt monohydrate	ABIE51_RS11545	long-chain fatty acid--CoA ligase	+1.6
L-Malic acid disodium salt monohydrate	ABIE51_RS17635	O-antigen ligase	-1.6
Potassium acetate	ABIE51_RS00190	isocitrate lyase	-1.5	Yes
Potassium acetate	ABIE51_RS00195	malate synthase A	-1.5	Yes
Potassium acetate	ABIE51_RS00200	LysR family transcriptional regulator	-1.5	Yes
Potassium acetate	ABIE51_RS18570	MFS transporter	-1.3
Potassium acetate	ABIE51_RS18840	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-1.7
Sodium pyruvate	ABIE51_RS18840	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-1.3
Ying_AminoAcid20	ABIE51_RS00205	lysophospholipid acyltransferase family protein	-1.3
Ying_AminoAcid20	ABIE51_RS00235	2-alkyl-3-oxoalkanoate reductase	-2.7
Ying_AminoAcid20	ABIE51_RS00260	alpha/beta fold hydrolase	-1.6
Ying_AminoAcid20	ABIE51_RS00705	ferredoxin--NADP reductase	-1.9
Ying_AminoAcid20	ABIE51_RS00780	tetratricopeptide repeat protein	+1.7
Ying_AminoAcid20	ABIE51_RS03980	arginase	-1.4
Ying_AminoAcid20	ABIE51_RS04030	dihydrolipoamide acetyltransferase family protein	-1.7
Ying_AminoAcid20	ABIE51_RS04040	alpha-ketoacid dehydrogenase subunit beta	-1.6
Ying_AminoAcid20	ABIE51_RS04045	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	-1.4
Ying_AminoAcid20	ABIE51_RS07475	ribonuclease R	+1.4
Ying_AminoAcid20	ABIE51_RS08685	tetratricopeptide repeat protein	-1.9
Ying_AminoAcid20	ABIE51_RS08790	YciI family protein	-1.8
Ying_AminoAcid20	ABIE51_RS13250	NUDIX hydrolase	+1.4
Ying_AminoAcid20	ABIE51_RS13875	translation elongation factor 4	-2.2
Ying_AminoAcid20	ABIE51_RS15090	XRE family transcriptional regulator	-1.6
Ying_AminoAcid20	ABIE51_RS16505	branched-chain amino acid transaminase	-1.4
Ying_AminoAcid20	ABIE51_RS16765	response regulator transcription factor	+1.6
Ying_AminoAcid20	ABIE51_RS17130	dicarboxylate/amino acid:cation symporter	-1.6
Ying_AminoAcid20	ABIE51_RS17435	serine/threonine protein kinase	+1.2
Ying_OrganicAcid7	ABIE51_RS01525	histidine phosphatase family protein	-1.3
Ying_OrganicAcid7	ABIE51_RS01625	GntR family transcriptional regulator	+1.3
Ying_OrganicAcid7	ABIE51_RS01655	DcaP family trimeric outer membrane transporter	-1.3
Ying_OrganicAcid7	ABIE51_RS01675	PAS domain-containing hybrid sensor histidine kinase/response regulator	-3.9
Ying_OrganicAcid7	ABIE51_RS05590	hypothetical protein	+1.3
Ying_OrganicAcid7	ABIE51_RS06390	C40 family peptidase	-1.7
Ying_OrganicAcid7	ABIE51_RS06790	YhdP family protein	-1.2
Ying_OrganicAcid7	ABIE51_RS13765	EAL domain-containing protein	-1.1
Ying_OrganicAcid7	ABIE51_RS13790	acyl-CoA dehydrogenase family protein	-1.4
Ying_OrganicAcid7	ABIE51_RS15525	carbon starvation CstA family protein	-3.7
Ying_OrganicAcid7	ABIE51_RS15530	YbdD/YjiX family protein	-4.0
Ying_OrganicAcid7	ABIE51_RS16275	TonB-dependent receptor	-1.3
Ying_all64	ABIE51_RS00840	ATP-binding protein	-1.6
Ying_all64	ABIE51_RS00845	response regulator	-1.8
Ying_all64	ABIE51_RS03625	sugar porter family MFS transporter	-1.3
Ying_all64	ABIE51_RS04270	YdcH family protein	-1.1
Ying_all64	ABIE51_RS06415	N-formylglutamate deformylase	-1.3
Ying_all64	ABIE51_RS08000	hypothetical protein	+1.4
Ying_all64	ABIE51_RS12550	thiamine pyrophosphate-dependent enzyme	-1.1
Ying_all64	ABIE51_RS16430	nucleoside transporter C-terminal domain-containing protein	-1.3
Ying_sugar7	ABIE51_RS01580	glucokinase	-1.8
Ying_sugar7	ABIE51_RS01985	DNA helicase II	-2.8
Ying_sugar7	ABIE51_RS03010	S9 family peptidase	-1.4
Ying_sugar7	ABIE51_RS04905	lactoylglutathione lyase	-1.8
Ying_sugar7	ABIE51_RS04910	alpha,alpha-trehalose-phosphate synthase (UDP-forming)	+1.5
Ying_sugar7	ABIE51_RS07790	CinA family protein	-1.5
Ying_sugar7	ABIE51_RS07800	recombinase RecA	-1.9
Ying_sugar7	ABIE51_RS08255	LysR family transcriptional regulator	-1.7
Ying_sugar7	ABIE51_RS09040	ABC transporter ATP-binding protein	-1.0
Ying_sugar7	ABIE51_RS11445	replication-associated recombination protein A	-1.4
Ying_sugar7	ABIE51_RS11655	DNA repair protein RecN	-2.2
Ying_sugar7	ABIE51_RS12455	excinuclease ABC subunit UvrC	-1.9
Ying_sugar7	ABIE51_RS16680	flagellar hook capping FlgD N-terminal domain-containing protein	+1.6
Ying_sugar7	ABIE51_RS16730	flagellar filament capping protein FliD	-1.4
Ying_sugar7	ABIE51_RS16765	response regulator transcription factor	+1.7
Ying_sugar7	ABIE51_RS17230	ATP-dependent DNA helicase RecG	-3.5
Ying_sugar7	ABIE51_RS17420	acetylornithine/succinyldiaminopimelate transaminase	-2.9	Yes
Ying_sugar7	ABIE51_RS18675	NAD(P)-dependent oxidoreductase	-2.4
casamino acids	ABIE51_RS08255	LysR family transcriptional regulator	-2.3
casamino acids	ABIE51_RS13160	carboxyl transferase domain-containing protein	-2.0
casamino acids	ABIE51_RS13200	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	-1.8