| Condition | Gene | Description | Fitness | Cons. |
|---|
| Adenosine | MPMX20_00682 | Phosphopentomutase | -3.7 | Yes |
| Adenosine | MPMX20_00683 | Purine nucleoside phosphorylase DeoD-type | -4.2 | Yes |
| Adenosine | MPMX20_01976 | Inner membrane transport protein YdhC | -2.8 | Yes |
| Adenosine | MPMX20_01977 | putative HTH-type transcriptional regulator YahB | -1.9 | Yes |
| Adenosine | MPMX20_03287 | Nucleoside permease NupC | -1.6 | |
| Adenosine | MPMX20_03821 | Nucleoside permease NupG | -1.3 | |
| Beta-Lactose | MPMX20_00460 | Ribonuclease R | -1.6 | |
| Beta-Lactose | MPMX20_00662 | Lichenan permease IIC component | -1.5 | |
| Beta-Lactose | MPMX20_01051 | Lactose operon repressor | +1.4 | |
| Beta-Lactose | MPMX20_01052 | Beta-galactosidase | -2.6 | |
| Beta-Lactose | MPMX20_01384 | Galactokinase | -1.7 | |
| Beta-Lactose | MPMX20_01385 | Galactose-1-phosphate uridylyltransferase | -3.7 | |
| Beta-Lactose | MPMX20_01471 | Glutathione transport system permease protein GsiC | -1.9 | |
| Beta-Lactose | MPMX20_01716 | putative phosphatase YcdX | -1.5 | |
| Beta-Lactose | MPMX20_02562 | hypothetical protein | -1.2 | |
| Beta-Lactose | MPMX20_03221 | 5'-deoxynucleotidase YfbR | -1.9 | |
| Beta-Lactose | MPMX20_04568 | Alpha-galactosidase | +3.8 | |
| Beta-Lactose | MPMX20_04569 | HTH-type transcriptional regulator RafR | +4.1 | |
| Citric Acid | MPMX20_03822 | 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase | -1.6 | |
| Citric Acid | MPMX20_03824 | Citrate lyase alpha chain | -1.6 | |
| Citric Acid | MPMX20_03825 | Citrate lyase subunit beta | -1.9 | |
| Cytidine | MPMX20_00681 | Thymidine phosphorylase | -1.3 | |
| Cytidine | MPMX20_00682 | Phosphopentomutase | -4.0 | Yes |
| Cytidine | MPMX20_01718 | Inner membrane protein YcdZ | -1.1 | |
| Cytidine | MPMX20_03115 | Cytidine deaminase | -3.4 | Yes |
| Cytidine | MPMX20_04449 | Uridine phosphorylase | -4.8 | Yes |
| D,L-Malic Acid | MPMX20_04413 | Aerobic C4-dicarboxylate transport protein | -2.2 | Yes |
| D-Alanine | MPMX20_00484 | D-serine/D-alanine/glycine transporter | -2.7 | Yes |
| D-Alanine | MPMX20_01682 | Lactose operon repressor | -1.8 | |
| D-Alanine | MPMX20_01744 | [Ribosomal protein S5]-alanine N-acetyltransferase | +1.7 | |
| D-Alanine | MPMX20_01922 | Phosphoenolpyruvate synthase | -3.6 | Yes |
| D-Alanine | MPMX20_02699 | D-amino acid dehydrogenase | -3.8 | Yes |
| D-Cellobiose | MPMX20_00051 | 6-phospho-beta-glucosidase GmuD | -1.4 | Yes |
| D-Cellobiose | MPMX20_00052 | Lichenan permease IIC component | -1.4 | Yes |
| D-Cellobiose | MPMX20_02589 | Aldehyde-alcohol dehydrogenase | -1.3 | |
| D-Fructose | MPMX20_03131 | PTS system fructose-specific EIIB'BC component | -2.1 | Yes |
| D-Fructose | MPMX20_03133 | Multiphosphoryl transfer protein | -2.3 | Yes |
| D-Galactose | MPMX20_00598 | HTH-type transcriptional regulator DegA | +2.2 | |
| D-Galactose | MPMX20_01384 | Galactokinase | -4.9 | Yes |
| D-Galactose | MPMX20_01385 | Galactose-1-phosphate uridylyltransferase | -5.5 | Yes |
| D-Galactose | MPMX20_03118 | Galactoside transport system permease protein MglC | -1.3 | |
| D-Galactose | MPMX20_03119 | Galactose/methyl galactoside import ATP-binding protein MglA | -1.6 | |
| D-Galactose | MPMX20_03120 | D-galactose-binding periplasmic protein | -1.3 | |
| D-Galactose | MPMX20_03121 | HTH-type transcriptional regulator GalS | +4.1 | Yes |
| D-Galactose | MPMX20_03648 | putative HTH-type transcriptional regulator YbbH | +1.1 | |
| D-Galactose | MPMX20_03699 | HTH-type transcriptional regulator GalR | +3.6 | Yes |
| D-Galactose | MPMX20_03801 | Galactose-proton symporter | -1.3 | Yes |
| D-Galactose | MPMX20_04569 | HTH-type transcriptional regulator RafR | +7.6 | |
| D-Galacturonic Acid monohydrate | MPMX20_03138 | Polyol:NADP oxidoreductase | -1.5 | |
| D-Galacturonic Acid monohydrate | MPMX20_04000 | Altronate dehydratase | -2.4 | Yes |
| D-Galacturonic Acid monohydrate | MPMX20_04001 | Uronate isomerase | -1.3 | Yes |
| D-Galacturonic Acid monohydrate | MPMX20_04411 | 2-dehydro-3-deoxygluconokinase | -1.1 | Yes |
| D-Glucosamine Hydrochloride | MPMX20_01324 | Glucosamine-6-phosphate deaminase | -6.3 | Yes |
| D-Glucosamine Hydrochloride | MPMX20_01887 | Hexitol phosphatase B | -1.3 | |
| D-Glucose-6-Phosphate sodium salt | MPMX20_00033 | Transcriptional regulatory protein UhpA | -1.3 | Yes |
| D-Glucose-6-Phosphate sodium salt | MPMX20_00035 | Membrane sensor protein UhpC | -1.4 | Yes |
| D-Glucuronic Acid | MPMX20_03137 | Mannonate dehydratase | -4.3 | Yes |
| D-Glucuronic Acid | MPMX20_03138 | Polyol:NADP oxidoreductase | -2.1 | |
| D-Glucuronic Acid | MPMX20_04001 | Uronate isomerase | -2.3 | Yes |
| D-Glucuronic Acid | MPMX20_04002 | Hexuronate transporter | -2.0 | Yes |
| D-Maltose monohydrate | MPMX20_00250 | Maltose/maltodextrin transport system permease protein MalF | -1.3 | Yes |
| D-Maltose monohydrate | MPMX20_00252 | Maltose/maltodextrin import ATP-binding protein MalK | -1.8 | Yes |
| D-Maltose monohydrate | MPMX20_04303 | 4-alpha-glucanotransferase | -1.5 | Yes |
| D-Maltose monohydrate | MPMX20_04304 | Maltodextrin phosphorylase | -1.9 | Yes |
| D-Maltose monohydrate | MPMX20_04305 | HTH-type transcriptional regulator MalT | -1.7 | Yes |
| D-Mannitol | MPMX20_00135 | PTS system mannitol-specific EIICBA component | -2.3 | Yes |
| D-Mannose | MPMX20_02722 | PTS system mannose-specific EIIAB component | -2.5 | Yes |
| D-Mannose | MPMX20_02723 | PTS system mannose-specific EIIC component | -2.9 | |
| D-Mannose | MPMX20_02724 | PTS system mannose-specific EIID component | -3.0 | Yes |
| D-Mannose | MPMX20_03648 | putative HTH-type transcriptional regulator YbbH | +1.5 | |
| D-Raffinose pentahydrate | MPMX20_01562 | Formate acetyltransferase 1 | -1.3 | |
| D-Raffinose pentahydrate | MPMX20_02348 | Sucrose-6-phosphate hydrolase | -1.1 | Yes |
| D-Raffinose pentahydrate | MPMX20_04711 | hypothetical protein | +1.4 | |
| D-Ribose | MPMX20_04410 | Cyclic di-GMP phosphodiesterase PdeH | +1.3 | |
| D-Ribose | MPMX20_04616 | Ribose import binding protein RbsB | -3.0 | Yes |
| D-Ribose | MPMX20_04617 | Ribose import permease protein RbsC | -2.1 | Yes |
| D-Ribose | MPMX20_04618 | Ribose import ATP-binding protein RbsA | -2.1 | Yes |
| D-Salicin | MPMX20_03108 | 6-phospho-beta-glucosidase BglB | -1.9 | |
| D-Salicin | MPMX20_03109 | PTS system beta-glucoside-specific EIIBCA component | -3.1 | Yes |
| D-Salicin | MPMX20_03110 | Cryptic beta-glucoside bgl operon antiterminator | -3.0 | Yes |
| D-Serine | MPMX20_00023 | D-serine dehydratase | -4.9 | Yes |
| D-Serine | MPMX20_00025 | HTH-type transcriptional regulator DsdC | -2.6 | Yes |
| D-Serine | MPMX20_01922 | Phosphoenolpyruvate synthase | -3.4 | Yes |
| D-Sorbitol | MPMX20_00135 | PTS system mannitol-specific EIICBA component | -1.4 | |
| D-Sorbitol | MPMX20_02031 | NAD(P) transhydrogenase subunit alpha | -1.4 | |
| D-Sorbitol | MPMX20_02032 | NAD(P) transhydrogenase subunit beta | -1.6 | |
| D-Sorbitol | MPMX20_03589 | Sorbitol-6-phosphate 2-dehydrogenase | -3.9 | Yes |
| D-Trehalose dihydrate | MPMX20_00538 | PTS system trehalose-specific EIIBC component | -2.7 | Yes |
| D-Trehalose dihydrate | MPMX20_01561 | Pyruvate formate-lyase 1-activating enzyme | -1.4 | |
| D-Xylose | MPMX20_00161 | Xylose operon regulatory protein | -6.2 | Yes |
| D-Xylose | MPMX20_00162 | Xylose transport system permease protein XylH | -1.3 | Yes |
| D-Xylose | MPMX20_00163 | Xylose import ATP-binding protein XylG | -2.0 | Yes |
| D-Xylose | MPMX20_00164 | D-xylose-binding periplasmic protein | -2.3 | Yes |
| D-Xylose | MPMX20_00165 | Xylose isomerase | -6.6 | Yes |
| D-Xylose | MPMX20_00166 | Xylulose kinase | -6.6 | Yes |
| D-Xylose | MPMX20_01383 | Aldose 1-epimerase | -1.4 | Yes |
| Glucuronamide | MPMX20_00135 | PTS system mannitol-specific EIICBA component | -1.1 | |
| Glucuronamide | MPMX20_00296 | Transcriptional regulatory protein OmpR | +1.5 | |
| Glucuronamide | MPMX20_00300 | Ribose import binding protein RbsB | +1.6 | |
| Glucuronamide | MPMX20_00301 | Ribose import permease protein RbsC | +1.7 | |
| Glucuronamide | MPMX20_00302 | Ribose import ATP-binding protein RbsA | +1.6 | |
| Glucuronamide | MPMX20_00303 | Sensor histidine kinase RcsC | +1.5 | |
| Glucuronamide | MPMX20_02092 | D-galactonate dehydratase family member | +2.2 | |
| Glucuronamide | MPMX20_02093 | Starvation-sensing protein RspB | +2.2 | |
| Glucuronamide | MPMX20_02094 | Putative transporter YdfJ | +2.1 | |
| Glucuronamide | MPMX20_02095 | Polyol:NADP oxidoreductase | +1.5 | |
| Glucuronamide | MPMX20_03121 | HTH-type transcriptional regulator GalS | -1.3 | |
| Glucuronamide | MPMX20_03137 | Mannonate dehydratase | -2.6 | |
| Glucuronamide | MPMX20_03138 | Polyol:NADP oxidoreductase | -2.5 | |
| Glucuronamide | MPMX20_03699 | HTH-type transcriptional regulator GalR | -3.6 | |
| Glucuronamide | MPMX20_04001 | Uronate isomerase | -2.8 | |
| Glucuronamide | MPMX20_04002 | Hexuronate transporter | -2.9 | |
| Gly-DL-Asp | MPMX20_00193 | Dipeptide transport ATP-binding protein DppD | -1.6 | |
| Gly-Glu | MPMX20_00190 | Periplasmic dipeptide transport protein | -1.6 | |
| Gly-Glu | MPMX20_00191 | Dipeptide transport system permease protein DppB | -1.7 | Yes |
| Gly-Glu | MPMX20_00192 | Dipeptide transport system permease protein DppC | -1.6 | Yes |
| Gly-Glu | MPMX20_00193 | Dipeptide transport ATP-binding protein DppD | -2.2 | |
| Gly-Glu | MPMX20_00194 | Vitamin B12 import ATP-binding protein BtuD | -1.7 | |
| Gly-Glu | MPMX20_00922 | Cytosol non-specific dipeptidase | -2.6 | Yes |
| Gly-Glu | MPMX20_02039 | Indole-3-acetyl-aspartic acid hydrolase | +1.0 | |
| Gly-Glu | MPMX20_03762 | Glycine dehydrogenase (decarboxylating) | -1.5 | Yes |
| Gly-Glu | MPMX20_03764 | Aminomethyltransferase | -1.6 | |
| Glycerol | MPMX20_01110 | putative fimbrial chaperone SfmC | -1.3 | |
| Glycerol | MPMX20_01112 | putative fimbrial-like protein SfmH | -1.7 | |
| Glycerol | MPMX20_01113 | putative fimbrial-like protein SfmF | -1.3 | |
| Glycerol | MPMX20_01755 | Flagellar hook protein FlgE | -1.5 | |
| Glycerol | MPMX20_01930 | Inhibitor of hydrogen peroxide resistance | -1.1 | |
| Glycerol | MPMX20_02783 | Flagellar biosynthesis protein FlhA | -1.5 | |
| Glycerol | MPMX20_02801 | Flagellar transcriptional regulator FlhC | -2.1 | |
| Glycerol | MPMX20_02802 | Flagellar transcriptional regulator FlhD | -1.4 | |
| Glycerol | MPMX20_02854 | Flagellin | -1.3 | |
| Glycerol | MPMX20_02935 | Flagellar M-ring protein | -1.4 | |
| Glycerol | MPMX20_02936 | Flagellar motor switch protein FliG | -1.4 | |
| Glycerol | MPMX20_02937 | Flagellar assembly protein FliH | -1.7 | |
| Glycerol | MPMX20_02940 | Flagellar hook-length control protein | -1.3 | |
| Glycerol | MPMX20_02942 | Flagellar motor switch protein FliM | -1.4 | |
| Glycerol | MPMX20_02943 | Flagellar motor switch protein FliN | -1.8 | |
| Glycerol | MPMX20_02947 | Flagellar biosynthetic protein FliR | -1.3 | |
| Inosine | MPMX20_00682 | Phosphopentomutase | -5.4 | Yes |
| Inosine | MPMX20_00683 | Purine nucleoside phosphorylase DeoD-type | -4.7 | Yes |
| Inosine | MPMX20_01976 | Inner membrane transport protein YdhC | -2.7 | Yes |
| Inosine | MPMX20_01977 | putative HTH-type transcriptional regulator YahB | -2.7 | |
| Inosine | MPMX20_03287 | Nucleoside permease NupC | -2.7 | Yes |
| Inosine | MPMX20_03300 | Purine nucleoside phosphorylase 2 | +1.6 | |
| Itaconic Acid | MPMX20_04413 | Aerobic C4-dicarboxylate transport protein | +1.7 | |
| L-(-)-sorbose | MPMX20_02722 | PTS system mannose-specific EIIAB component | +1.3 | |
| L-Alanine | MPMX20_01922 | Phosphoenolpyruvate synthase | -4.2 | Yes |
| L-Alanine | MPMX20_02274 | hypothetical protein | +1.4 | |
| L-Alanine | MPMX20_02698 | Alanine racemase, catabolic | -4.8 | Yes |
| L-Alanine | MPMX20_02699 | D-amino acid dehydrogenase | -4.1 | Yes |
| L-Arabinose | MPMX20_00755 | L-ribulose-5-phosphate 4-epimerase AraD | -4.5 | Yes |
| L-Arabinose | MPMX20_00756 | L-arabinose isomerase | -2.0 | Yes |
| L-Arabinose | MPMX20_00757 | Ribulokinase | -1.7 | Yes |
| L-Asparagine | MPMX20_01849 | L-asparaginase 1 | -4.6 | Yes |
| L-Asparagine | MPMX20_01850 | Protease 4 | -3.6 | |
| L-Asparagine | MPMX20_02406 | L-asparagine permease 2 | -2.4 | |
| L-Asparagine | MPMX20_03522 | hypothetical protein | -1.1 | |
| L-Asparagine | MPMX20_03523 | hypothetical protein | -1.2 | |
| L-Asparagine | MPMX20_03525 | Type I secretion system membrane fusion protein PrsE | -1.3 | |
| L-Asparagine | MPMX20_03701 | Glc operon transcriptional activator | -1.7 | |
| L-Asparagine | MPMX20_04290 | Phosphoenolpyruvate carboxykinase (ATP) | -1.4 | |
| L-Asparagine | MPMX20_04332 | hypothetical protein | -1.1 | |
| L-Asparagine | MPMX20_04581 | hypothetical protein | -1.2 | |
| L-Aspartic Acid | MPMX20_00122 | putative protein YibN | -1.5 | |
| L-Aspartic Acid | MPMX20_00309 | HTH-type transcriptional regulator RpiR | +1.4 | |
| L-Aspartic Acid | MPMX20_00555 | HTH-type transcriptional regulator XynR | +1.0 | |
| L-Aspartic Acid | MPMX20_00908 | Glutathione hydrolase-like YwrD proenzyme | +3.0 | |
| L-Aspartic Acid | MPMX20_01305 | Glutamate/aspartate import permease protein GltJ | -1.4 | Yes |
| L-Aspartic Acid | MPMX20_01398 | HTH-type transcriptional repressor NagR | +1.3 | |
| L-Aspartic Acid | MPMX20_02371 | Alcohol dehydrogenase, propanol-preferring | -1.5 | |
| L-Aspartic Acid | MPMX20_02697 | K(+)/H(+) antiporter NhaP2 | +2.3 | |
| L-Aspartic Acid | MPMX20_03417 | hypothetical protein | +2.4 | |
| L-Aspartic Acid | MPMX20_04413 | Aerobic C4-dicarboxylate transport protein | -1.6 | |
| L-Cysteine hydrochloride monohydrate | MPMX20_01039 | DNA-binding transcriptional activator DecR | -4.1 | |
| L-Cysteine hydrochloride monohydrate | MPMX20_01922 | Phosphoenolpyruvate synthase | -2.8 | |
| L-Cysteine hydrochloride monohydrate | MPMX20_04016 | putative serine transporter | -1.3 | |
| L-Glutamic acid monopotassium salt monohydrate | MPMX20_00460 | Ribonuclease R | -1.4 | |
| L-Glutamic acid monopotassium salt monohydrate | MPMX20_00517 | Metalloprotease PmbA | -1.3 | |
| L-Glutamic acid monopotassium salt monohydrate | MPMX20_00908 | Glutathione hydrolase-like YwrD proenzyme | +1.7 | |
| L-Glutamic acid monopotassium salt monohydrate | MPMX20_01304 | Glutamate/aspartate import permease protein GltK | -3.1 | Yes |
| L-Glutamic acid monopotassium salt monohydrate | MPMX20_01305 | Glutamate/aspartate import permease protein GltJ | -2.8 | Yes |
| L-Glutamic acid monopotassium salt monohydrate | MPMX20_01398 | HTH-type transcriptional repressor NagR | +1.5 | |
| L-Glutamic acid monopotassium salt monohydrate | MPMX20_02697 | K(+)/H(+) antiporter NhaP2 | +2.6 | |
| L-Glutamic acid monopotassium salt monohydrate | MPMX20_02752 | Protease 2 | -1.3 | |
| L-Glutamic acid monopotassium salt monohydrate | MPMX20_02759 | Pyruvate kinase II | -1.4 | |
| L-Glutamic acid monopotassium salt monohydrate | MPMX20_03417 | hypothetical protein | +2.1 | |
| L-Glutamic acid monopotassium salt monohydrate | MPMX20_04493 | Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase | -1.7 | |
| L-Glutamine | MPMX20_00174 | hypothetical protein | variable | |
| L-Glutamine | MPMX20_01109 | Type-1 fimbrial protein, A chain | variable | |
| L-Glutamine | MPMX20_02271 | Glutaminase 2 | -6.0 | Yes |
| L-Glutamine | MPMX20_02406 | L-asparagine permease 2 | -6.8 | |
| L-Glutamine | MPMX20_03176 | Phosphotransferase RcsD | +1.2 | |
| L-Glutamine | MPMX20_03303 | hypothetical protein | -1.7 | |
| L-Glutamine | MPMX20_03890 | Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme | -1.8 | Yes |
| L-Glutamine | MPMX20_03987 | 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase | -1.4 | |
| L-Glutamine | MPMX20_04258 | Phosphoribulokinase, plasmid | -1.1 | |
| L-Glutamine | MPMX20_04290 | Phosphoenolpyruvate carboxykinase (ATP) | -1.3 | |
| L-Glutamine | MPMX20_04312 | Glucose-1-phosphate adenylyltransferase | variable | |
| L-Glutamine | MPMX20_04314 | 1,4-alpha-glucan branching enzyme GlgB | variable | |
| L-Glutamine | MPMX20_04451 | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase | variable | |
| L-Histidine | MPMX20_00805 | Aromatic amino acid transport protein AroP | +2.3 | |
| L-Histidine | MPMX20_01396 | Imidazolonepropionase | -4.7 | Yes |
| L-Histidine | MPMX20_01397 | Formimidoylglutamase | -5.9 | |
| L-Histidine | MPMX20_01398 | HTH-type transcriptional repressor NagR | +1.6 | |
| L-Histidine | MPMX20_01399 | Urocanate hydratase | -5.1 | Yes |
| L-Histidine | MPMX20_01400 | Histidine ammonia-lyase | -3.2 | Yes |
| L-Histidine | MPMX20_01840 | hypothetical protein | +1.3 | |
| L-Histidine | MPMX20_02406 | L-asparagine permease 2 | +1.7 | |
| L-Histidine | MPMX20_04290 | Phosphoenolpyruvate carboxykinase (ATP) | -1.6 | |
| L-Malic acid disodium salt monohydrate | MPMX20_02853 | hypothetical protein | -1.0 | |
| L-Malic acid disodium salt monohydrate | MPMX20_04412 | Protein YhjJ | -1.4 | |
| L-Malic acid disodium salt monohydrate | MPMX20_04413 | Aerobic C4-dicarboxylate transport protein | -1.9 | Yes |
| L-Phenylalanine | MPMX20_00231 | Malate synthase A | -2.7 | |
| L-Phenylalanine | MPMX20_00232 | Isocitrate lyase | -2.2 | |
| L-Phenylalanine | MPMX20_00233 | Isocitrate dehydrogenase kinase/phosphatase | -1.3 | |
| L-Phenylalanine | MPMX20_02151 | 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase | -1.6 | Yes |
| L-Phenylalanine | MPMX20_02454 | Transcriptional regulatory protein TyrR | -1.8 | Yes |
| L-Phenylalanine | MPMX20_03283 | Indole-3-pyruvate decarboxylase | -1.3 | |
| L-Proline | MPMX20_00122 | putative protein YibN | -1.8 | |
| L-Proline | MPMX20_00723 | Transcriptional activator protein NhaR | +1.7 | |
| L-Proline | MPMX20_01104 | Maltose regulon regulatory protein MalI | -1.7 | |
| L-Proline | MPMX20_01128 | Ribose operon repressor | -1.7 | |
| L-Proline | MPMX20_01204 | hypothetical protein | -1.5 | |
| L-Proline | MPMX20_01682 | Lactose operon repressor | -2.3 | |
| L-Proline | MPMX20_01702 | Bifunctional protein PutA | -4.8 | Yes |
| L-Proline | MPMX20_01703 | Sodium/proline symporter | -4.8 | Yes |
| L-Proline | MPMX20_01922 | Phosphoenolpyruvate synthase | +1.5 | Yes |
| L-Proline | MPMX20_02562 | hypothetical protein | -1.3 | |
| L-Proline | MPMX20_02752 | Protease 2 | -1.0 | |
| L-Proline | MPMX20_02759 | Pyruvate kinase II | -1.5 | |
| L-Proline | MPMX20_03701 | Glc operon transcriptional activator | -2.2 | |
| L-Proline | MPMX20_04050 | Ribosomal RNA small subunit methyltransferase I | -1.5 | |
| L-Proline | MPMX20_04118 | Cytosol aminopeptidase | -1.9 | |
| L-Proline | MPMX20_04290 | Phosphoenolpyruvate carboxykinase (ATP) | +1.4 | |
| L-Proline | MPMX20_04330 | High-affinity branched-chain amino acid transport ATP-binding protein LivF | -1.8 | |
| L-Proline | MPMX20_04331 | Lipopolysaccharide export system ATP-binding protein LptB | -1.5 | |
| L-Proline | MPMX20_04332 | hypothetical protein | -1.5 | Yes |
| L-Proline | MPMX20_04333 | High-affinity branched-chain amino acid transport system permease protein LivH | -1.2 | |
| L-Proline | MPMX20_04336 | Leu/Ile/Val-binding protein | -1.5 | |
| L-Proline | MPMX20_04342 | Ribosomal RNA small subunit methyltransferase D | -1.4 | |
| L-Proline | MPMX20_04389 | HTH-type transcriptional regulator KipR | -1.6 | |
| L-Rhamnose monohydrate | MPMX20_04560 | L-rhamnose-proton symporter | -2.6 | Yes |
| L-Rhamnose monohydrate | MPMX20_04561 | HTH-type transcriptional activator RhaR | -3.0 | Yes |
| L-Rhamnose monohydrate | MPMX20_04562 | HTH-type transcriptional activator RhaS | -3.3 | Yes |
| L-Rhamnose monohydrate | MPMX20_04563 | L-Rhamnulokinase | -3.3 | Yes |
| L-Rhamnose monohydrate | MPMX20_04564 | L-rhamnose isomerase | -4.7 | Yes |
| L-Rhamnose monohydrate | MPMX20_04565 | Rhamnulose-1-phosphate aldolase | -5.4 | Yes |
| L-Serine | MPMX20_00023 | D-serine dehydratase | -1.3 | |
| L-Serine | MPMX20_01922 | Phosphoenolpyruvate synthase | -3.1 | |
| L-Serine | MPMX20_02697 | K(+)/H(+) antiporter NhaP2 | +1.6 | |
| L-Serine | MPMX20_02719 | L-serine dehydratase 1 | -4.1 | Yes |
| L-Serine | MPMX20_03762 | Glycine dehydrogenase (decarboxylating) | +3.0 | |
| L-Serine | MPMX20_03764 | Aminomethyltransferase | +2.6 | |
| L-Threonine | MPMX20_00116 | L-threonine 3-dehydrogenase | -2.3 | Yes |
| L-Threonine | MPMX20_00232 | Isocitrate lyase | -1.3 | |
| N-Acetyl-D-Glucosamine | MPMX20_01324 | Glucosamine-6-phosphate deaminase | -5.8 | Yes |
| Potassium acetate | MPMX20_00231 | Malate synthase A | -4.9 | Yes |
| Potassium acetate | MPMX20_00232 | Isocitrate lyase | -4.4 | Yes |
| Potassium acetate | MPMX20_00233 | Isocitrate dehydrogenase kinase/phosphatase | -1.3 | Yes |
| Potassium acetate | MPMX20_01398 | HTH-type transcriptional repressor NagR | +1.1 | |
| Potassium acetate | MPMX20_01801 | NAD-dependent protein deacylase | -1.8 | Yes |
| Potassium acetate | MPMX20_02212 | HTH-type transcriptional regulator GbpR | +1.6 | |
| Potassium acetate | MPMX20_02697 | K(+)/H(+) antiporter NhaP2 | +1.9 | |
| Potassium acetate | MPMX20_03453 | Peptidyl-lysine N-acetyltransferase Pat | +1.3 | Yes |
| Potassium acetate | MPMX20_03692 | Phosphoenolpyruvate-dependent phosphotransferase system | +1.2 | |
| Potassium acetate | MPMX20_04400 | Cytoplasmic trehalase | +1.1 | |
| Potassium acetate | MPMX20_04493 | Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase | -1.5 | Yes |
| Sodium D,L-Lactate | MPMX20_00129 | L-lactate dehydrogenase | -1.4 | Yes |
| Sodium D,L-Lactate | MPMX20_00131 | L-lactate permease | -1.1 | Yes |
| Sodium D,L-Lactate | MPMX20_01922 | Phosphoenolpyruvate synthase | -4.0 | Yes |
| Sodium D-Lactate | MPMX20_00115 | 2-amino-3-ketobutyrate coenzyme A ligase | +1.5 | |
| Sodium D-Lactate | MPMX20_00129 | L-lactate dehydrogenase | +1.8 | |
| Sodium D-Lactate | MPMX20_00131 | L-lactate permease | -2.2 | Yes |
| Sodium D-Lactate | MPMX20_00289 | Cation/acetate symporter ActP | +3.1 | Yes |
| Sodium D-Lactate | MPMX20_00290 | Inner membrane protein YjcH | +3.6 | Yes |
| Sodium D-Lactate | MPMX20_00894 | hypothetical protein | -1.2 | |
| Sodium D-Lactate | MPMX20_01104 | Maltose regulon regulatory protein MalI | -1.5 | |
| Sodium D-Lactate | MPMX20_01398 | HTH-type transcriptional repressor NagR | +1.0 | |
| Sodium D-Lactate | MPMX20_01471 | Glutathione transport system permease protein GsiC | -2.5 | |
| Sodium D-Lactate | MPMX20_01922 | Phosphoenolpyruvate synthase | -2.1 | Yes |
| Sodium D-Lactate | MPMX20_02212 | HTH-type transcriptional regulator GbpR | +1.5 | Yes |
| Sodium D-Lactate | MPMX20_02577 | Protein YciI | +2.4 | |
| Sodium D-Lactate | MPMX20_02697 | K(+)/H(+) antiporter NhaP2 | +1.4 | |
| Sodium D-Lactate | MPMX20_02743 | putative protein YebV | +2.9 | |
| Sodium D-Lactate | MPMX20_03101 | Quinone-dependent D-lactate dehydrogenase | -3.6 | Yes |
| Sodium D-Lactate | MPMX20_03113 | hypothetical protein | -2.4 | Yes |
| Sodium D-Lactate | MPMX20_03303 | hypothetical protein | +1.9 | |
| Sodium D-Lactate | MPMX20_03357 | Exopolyphosphatase | -1.7 | |
| Sodium D-Lactate | MPMX20_03692 | Phosphoenolpyruvate-dependent phosphotransferase system | +1.3 | |
| Sodium D-Lactate | MPMX20_04258 | Phosphoribulokinase, plasmid | -1.6 | |
| Sodium D-Lactate | MPMX20_04581 | hypothetical protein | -1.7 | |
| Sodium D-Lactate | MPMX20_04612 | HTH-type transcriptional repressor NanR | +1.4 | |
| Sodium Fumarate dibasic | MPMX20_00091 | hypothetical protein | +1.5 | |
| Sodium Fumarate dibasic | MPMX20_00122 | putative protein YibN | -2.4 | |
| Sodium Fumarate dibasic | MPMX20_00695 | Trifunctional NAD biosynthesis/regulator protein NadR | +1.3 | |
| Sodium Fumarate dibasic | MPMX20_00702 | Adenosylcobalamin/alpha-ribazole phosphatase | -1.3 | |
| Sodium Fumarate dibasic | MPMX20_00908 | Glutathione hydrolase-like YwrD proenzyme | +1.9 | |
| Sodium Fumarate dibasic | MPMX20_00972 | Anti-adapter protein IraP | +1.3 | |
| Sodium Fumarate dibasic | MPMX20_01204 | hypothetical protein | -1.6 | |
| Sodium Fumarate dibasic | MPMX20_01230 | HTH-type transcriptional regulator BetI | +1.7 | |
| Sodium Fumarate dibasic | MPMX20_01308 | Magnesium and cobalt efflux protein CorC | -1.5 | |
| Sodium Fumarate dibasic | MPMX20_01702 | Bifunctional protein PutA | -1.4 | |
| Sodium Fumarate dibasic | MPMX20_01795 | Transcription-repair-coupling factor | +1.6 | |
| Sodium Fumarate dibasic | MPMX20_02018 | Maltose regulon regulatory protein MalI | -1.6 | |
| Sodium Fumarate dibasic | MPMX20_02594 | putative NTE family protein | -2.6 | |
| Sodium Fumarate dibasic | MPMX20_02759 | Pyruvate kinase II | -2.1 | |
| Sodium Fumarate dibasic | MPMX20_03118 | Galactoside transport system permease protein MglC | -1.5 | |
| Sodium Fumarate dibasic | MPMX20_03121 | HTH-type transcriptional regulator GalS | -2.8 | |
| Sodium Fumarate dibasic | MPMX20_03141 | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase | -1.5 | |
| Sodium Fumarate dibasic | MPMX20_03324 | NADP-dependent malic enzyme | -1.3 | Yes |
| Sodium Fumarate dibasic | MPMX20_03357 | Exopolyphosphatase | +1.9 | |
| Sodium Fumarate dibasic | MPMX20_03423 | Transcriptional regulatory protein QseF | -1.4 | |
| Sodium Fumarate dibasic | MPMX20_03481 | Inner membrane protein YpjD | -1.3 | |
| Sodium Fumarate dibasic | MPMX20_03699 | HTH-type transcriptional regulator GalR | -1.6 | |
| Sodium Fumarate dibasic | MPMX20_03762 | Glycine dehydrogenase (decarboxylating) | +1.5 | |
| Sodium Fumarate dibasic | MPMX20_04290 | Phosphoenolpyruvate carboxykinase (ATP) | -2.6 | |
| Sodium Fumarate dibasic | MPMX20_04389 | HTH-type transcriptional regulator KipR | -1.6 | |
| Sodium Fumarate dibasic | MPMX20_04412 | Protein YhjJ | -1.6 | |
| Sodium Fumarate dibasic | MPMX20_04413 | Aerobic C4-dicarboxylate transport protein | -4.2 | Yes |
| Sodium Fumarate dibasic | MPMX20_04418 | Cellulose synthase catalytic subunit [UDP-forming] | +1.0 | |
| Sodium Fumarate dibasic | MPMX20_04419 | Cellulose biosynthesis protein BcsQ | +1.3 | |
| Sodium Fumarate dibasic | MPMX20_04420 | Protein YhjR | +1.1 | |
| Sodium Fumarate dibasic | MPMX20_04450 | Carboxymethylenebutenolidase | +1.4 | |
| Sodium Fumarate dibasic | MPMX20_04492 | ATP-dependent RNA helicase RhlB | +1.6 | |
| Sodium Fumarate dibasic | MPMX20_04569 | HTH-type transcriptional regulator RafR | -2.0 | |
| Sodium L-Lactate | MPMX20_00129 | L-lactate dehydrogenase | -2.1 | Yes |
| Sodium L-Lactate | MPMX20_00130 | Putative L-lactate dehydrogenase operon regulatory protein | -1.5 | Yes |
| Sodium L-Lactate | MPMX20_00131 | L-lactate permease | -1.5 | Yes |
| Sodium L-Lactate | MPMX20_01758 | Flagellar L-ring protein | -1.4 | |
| Sodium L-Lactate | MPMX20_01759 | Flagellar P-ring protein | -1.4 | |
| Sodium L-Lactate | MPMX20_01922 | Phosphoenolpyruvate synthase | -5.1 | Yes |
| Sodium octanoate | MPMX20_01109 | Type-1 fimbrial protein, A chain | -1.0 | |
| Sodium octanoate | MPMX20_01721 | Curli production assembly/transport component CsgE | -1.7 | |
| Sodium octanoate | MPMX20_03116 | hypothetical protein | -1.7 | |
| Sodium propionate | MPMX20_02225 | Protein YciF | -1.2 | |
| Sodium propionate | MPMX20_04718 | Antirestriction protein KlcA | -1.5 | |
| Sodium pyruvate | MPMX20_00631 | Pyruvate/proton symporter BtsT | -1.2 | Yes |
| Sodium pyruvate | MPMX20_01922 | Phosphoenolpyruvate synthase | -3.6 | Yes |
| Sodium succinate dibasic hexahydrate | MPMX20_00122 | putative protein YibN | -2.8 | |
| Sodium succinate dibasic hexahydrate | MPMX20_02594 | putative NTE family protein | -2.1 | |
| Sodium succinate dibasic hexahydrate | MPMX20_02759 | Pyruvate kinase II | -1.4 | Yes |
| Sodium succinate dibasic hexahydrate | MPMX20_03121 | HTH-type transcriptional regulator GalS | -2.4 | Yes |
| Sodium succinate dibasic hexahydrate | MPMX20_03141 | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase | -1.3 | |
| Sodium succinate dibasic hexahydrate | MPMX20_03324 | NADP-dependent malic enzyme | -1.5 | Yes |
| Sodium succinate dibasic hexahydrate | MPMX20_03445 | L-aspartate oxidase | -1.6 | |
| Sodium succinate dibasic hexahydrate | MPMX20_03699 | HTH-type transcriptional regulator GalR | -1.5 | |
| Sodium succinate dibasic hexahydrate | MPMX20_04290 | Phosphoenolpyruvate carboxykinase (ATP) | -2.8 | Yes |
| Sodium succinate dibasic hexahydrate | MPMX20_04412 | Protein YhjJ | -1.4 | |
| Sodium succinate dibasic hexahydrate | MPMX20_04413 | Aerobic C4-dicarboxylate transport protein | -4.5 | Yes |
| Sodium succinate dibasic hexahydrate | MPMX20_04569 | HTH-type transcriptional regulator RafR | -1.6 | |
| Sucrose | MPMX20_01562 | Formate acetyltransferase 1 | -1.3 | |
| Sucrose | MPMX20_02348 | Sucrose-6-phosphate hydrolase | -1.7 | Yes |
| Sucrose | MPMX20_02589 | Aldehyde-alcohol dehydrogenase | -1.6 | |
| Thymidine | MPMX20_00680 | Deoxyribose-phosphate aldolase | -5.2 | |
| Thymidine | MPMX20_00681 | Thymidine phosphorylase | -5.1 | |
| Thymidine | MPMX20_00682 | Phosphopentomutase | -4.7 | |
| Thymidine | MPMX20_03821 | Nucleoside permease NupG | -3.0 | |
| Thymine | MPMX20_00122 | putative protein YibN | -1.4 | |
| Trisodium citrate dihydrate | MPMX20_03822 | 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase | -1.7 | |
| Trisodium citrate dihydrate | MPMX20_03823 | Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase | -1.8 | |
| Trisodium citrate dihydrate | MPMX20_03824 | Citrate lyase alpha chain | -2.0 | |
| Trisodium citrate dihydrate | MPMX20_03825 | Citrate lyase subunit beta | -2.0 | |
| Tween 20 | MPMX20_00231 | Malate synthase A | -4.2 | Yes |
| Tween 20 | MPMX20_00232 | Isocitrate lyase | -3.6 | Yes |
| Tween 20 | MPMX20_00233 | Isocitrate dehydrogenase kinase/phosphatase | -1.9 | Yes |
| Tween 20 | MPMX20_02711 | Long-chain-fatty-acid--CoA ligase | -2.5 | Yes |
| Tween 20 | MPMX20_02758 | HTH-type transcriptional regulator HexR | -2.1 | |
| Tween 20 | MPMX20_03113 | hypothetical protein | -3.0 | |
| Tween 20 | MPMX20_03114 | Inner membrane protein YohK | -3.6 | Yes |
| Tween 20 | MPMX20_03268 | Fatty acid oxidation complex subunit alpha | -1.1 | |
| Tween 20 | MPMX20_03271 | Long-chain fatty acid transport protein | -1.8 | Yes |
| Tween 20 | MPMX20_04436 | Fatty acid oxidation complex subunit alpha | -3.6 | Yes |
| Tween 20 | MPMX20_04437 | 3-ketoacyl-CoA thiolase | -2.7 | Yes |
| Uridine | MPMX20_00682 | Phosphopentomutase | -2.0 | Yes |
| Uridine | MPMX20_03115 | Cytidine deaminase | +2.4 | Yes |
| Uridine | MPMX20_04449 | Uridine phosphorylase | -2.9 | Yes |
| a-Ketoglutaric acid disodium salt hydrate | MPMX20_00122 | putative protein YibN | -1.9 | |
| a-Ketoglutaric acid disodium salt hydrate | MPMX20_00908 | Glutathione hydrolase-like YwrD proenzyme | +1.8 | |
| a-Ketoglutaric acid disodium salt hydrate | MPMX20_03141 | Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase | -1.6 | |
| a-Ketoglutaric acid disodium salt hydrate | MPMX20_04277 | Cell division protein DamX | -1.7 | |
| a-Ketoglutaric acid disodium salt hydrate | MPMX20_04413 | Aerobic C4-dicarboxylate transport protein | -2.5 | Yes |
| m-Inositol | MPMX20_03366 | 5-deoxy-glucuronate isomerase | -2.8 | Yes |
| m-Inositol | MPMX20_03367 | Inosose dehydratase | -2.1 | Yes |
| m-Inositol | MPMX20_03368 | 5-dehydro-2-deoxygluconokinase | -2.5 | Yes |
| m-Inositol | MPMX20_03369 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase | -2.8 | Yes |
| m-Inositol | MPMX20_03370 | Ribose import permease protein RbsC | -2.9 | Yes |
| m-Inositol | MPMX20_03371 | Ribose import ATP-binding protein RbsA | -2.9 | Yes |
| m-Inositol | MPMX20_03373 | Myo-inositol 2-dehydrogenase | -3.3 | Yes |
| m-Inositol | MPMX20_03374 | 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase | -2.8 | Yes |
| m-Inositol | MPMX20_03375 | Putative 3-oxopropanoate dehydrogenase | -3.6 | Yes |
| m-Inositol | MPMX20_04166 | Sodium/pantothenate symporter | -1.0 | |