Specific Phenotypes for Escherichia coli Nissle 1917 in carbon source experiments

Condition Gene Description Fitness Cons.
Casamino-acids ECOLIN_RS14195 phosphoribosylglycinamide formyltransferase -4.5 Yes
Casamino-acids ECOLIN_RS23035 thiamine phosphate synthase -1.2 Yes
Casamino-acids ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC -1.6 Yes
Casamino-acids ECOLIN_RS24045 aspartate ammonia-lyase -2.2 Yes
D-Glucose ECOLIN_RS00405 leu operon leader peptide +1.9  
D-Glucose ECOLIN_RS11310 H-NS family nucleoid-associated regulatory protein +2.4  
D-Glucose ECOLIN_RS15385 sulfate adenylyltransferase subunit CysD +1.7 Yes
D-Glucose ECOLIN_RS16700 N(6)-hydroxylysine O-acetyltransferase IucB +1.0  
D-Glucose ECOLIN_RS18535 cell division protein ZapE +2.6  
D-Glucose ECOLIN_RS21650 acetolactate synthase 2 catalytic subunit +1.6  
D-Glucose ECOLIN_RS21695 guanosine-5'-triphosphate,3'-diphosphate diphosphatase +3.1  
D-Glucose ECOLIN_RS31555 pheA operon leader peptide PheL +1.9  
L-Arabinose ECOLIN_RS00045 transaldolase +2.6  
L-Arabinose ECOLIN_RS00325 L-ribulose-5-phosphate 4-epimerase -2.4 Yes
L-Arabinose ECOLIN_RS00340 arabinose operon transcriptional regulator AraC +2.9 Yes
L-Arabinose ECOLIN_RS00405 leu operon leader peptide +3.5  
L-Arabinose ECOLIN_RS00835 bifunctional glycosyl transferase/transpeptidase -3.6 Yes
L-Arabinose ECOLIN_RS08950 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta +3.2  
L-Arabinose ECOLIN_RS11310 H-NS family nucleoid-associated regulatory protein +2.9  
L-Arabinose ECOLIN_RS13965 oxygen-dependent coproporphyrinogen oxidase +1.5  
L-Arabinose ECOLIN_RS15525 two-component sensor histidine kinase BarA +1.9  
L-Arabinose ECOLIN_RS15945 arabinose-proton symporter AraE +2.6 Yes
L-Arabinose ECOLIN_RS16690 NADPH-dependent L-lysine N(6)-monooxygenase IucD +2.2  
L-Arabinose ECOLIN_RS16695 NIS family aerobactin synthetase IucC +1.4  
L-Arabinose ECOLIN_RS16700 N(6)-hydroxylysine O-acetyltransferase IucB +2.2  
L-Arabinose ECOLIN_RS16705 aerobactin synthase IucA +2.4  
L-Arabinose ECOLIN_RS18535 cell division protein ZapE +5.1  
L-Arabinose ECOLIN_RS19240 bifunctional acetylornithine/succinyldiaminopimelate transaminase +1.5  
L-Arabinose ECOLIN_RS21650 acetolactate synthase 2 catalytic subunit +2.1  
L-Arabinose ECOLIN_RS21695 guanosine-5'-triphosphate,3'-diphosphate diphosphatase +3.8  
L-Arabinose ECOLIN_RS22835 phosphoenolpyruvate carboxylase +1.4 Yes
L-Arabinose ECOLIN_RS23015 2-iminoacetate synthase ThiH -1.2  
L-Arabinose ECOLIN_RS23035 thiamine phosphate synthase -1.2 Yes
L-Arabinose ECOLIN_RS25210 murein transglycosylase -4.0 Yes
L-Rhamnose ECOLIN_RS00840 ferrichrome porin FhuA +1.1  
L-Rhamnose ECOLIN_RS17620 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase -1.1 Yes
L-Rhamnose ECOLIN_RS20000 damage-inducible type I toxin DinQ +1.5  
L-Rhamnose ECOLIN_RS21350 tryptophanase leader peptide +1.1  
L-Rhamnose ECOLIN_RS21355 tryptophanase +1.2  
L-Rhamnose ECOLIN_RS21360 low affinity tryptophan permease TnaB +1.3  
L-Rhamnose ECOLIN_RS22480 rhamnulose-1-phosphate aldolase -1.4 Yes
L-Rhamnose ECOLIN_RS22485 L-rhamnose isomerase +5.5 Yes
L-Rhamnose ECOLIN_RS22490 rhamnulokinase +5.4 Yes
L-Rhamnose ECOLIN_RS22500 HTH-type transcriptional activator RhaS +8.3 Yes
L-Rhamnose ECOLIN_RS22505 HTH-type transcriptional activator RhaR +8.6 Yes
L-Rhamnose ECOLIN_RS22510 L-rhamnose/proton symporter RhaT +4.9 Yes
L-Rhamnose ECOLIN_RS22835 phosphoenolpyruvate carboxylase -1.5  
Sodium-DL-Lactate ECOLIN_RS00010 bifunctional aspartate kinase/homoserine dehydrogenase I -2.7  
Sodium-DL-Lactate ECOLIN_RS14700 bifunctional chorismate mutase/prephenate dehydrogenase -3.8  
Sodium-DL-Lactate ECOLIN_RS14705 3-deoxy-7-phosphoheptulonate synthase AroF -1.5 Yes
Sodium-DL-Lactate ECOLIN_RS15385 sulfate adenylyltransferase subunit CysD -1.8 Yes
Sodium-DL-Lactate ECOLIN_RS19285 siroheme synthase CysG -1.9  
Sodium-DL-Lactate ECOLIN_RS20570 L-lactate permease -1.5 Yes
Sodium-DL-Lactate ECOLIN_RS21670 threonine ammonia-lyase, biosynthetic -3.0  
Sodium-DL-Lactate ECOLIN_RS22835 phosphoenolpyruvate carboxylase -3.1 Yes