Specific Phenotypes for Dyella japonica UNC79MFTsu3.2 in carbon source experiments

Condition Gene Description Fitness Cons.
D-Cellobiose ABZR86_RS01675 sugar phosphate isomerase/epimerase -1.4  
D-Cellobiose ABZR86_RS01680 nucleoside permease -1.1  
D-Fructose ABZR86_RS01165 IclR family transcriptional regulator +6.2  
D-Fructose ABZR86_RS02750 cytochrome c -1.5  
D-Fructose ABZR86_RS09870 cytochrome c1 -2.0  
D-Fructose ABZR86_RS11090 GH92 family glycosyl hydrolase +1.4  
D-Fructose ABZR86_RS11100 fructose porter FruP (from data) -4.0 Yes
D-Fructose ABZR86_RS11105 Fructokinase (EC 2.7.1.4) (from data) -6.0 Yes
D-Fructose ABZR86_RS11110 AGE family epimerase/isomerase -2.2 Yes
D-Fructose ABZR86_RS12910 SURF1 family protein -1.5  
D-Fructose ABZR86_RS16315 efflux RND transporter periplasmic adaptor subunit +3.8  
D-Fructose ABZR86_RS16320 efflux RND transporter permease subunit +3.8  
D-Fructose ABZR86_RS22155 nitroreductase -1.3  
D-Galactose ABZR86_RS00775 peroxiredoxin -1.2  
D-Galactose ABZR86_RS01165 IclR family transcriptional regulator -3.5  
D-Galactose ABZR86_RS01205 D-galactanolactonase (from data) -4.2 Yes
D-Galactose ABZR86_RS01210 SDR family oxidoreductase -5.4 Yes
D-Galactose ABZR86_RS01215 galactonate dehydratase -5.1 Yes
D-Galactose ABZR86_RS01220 2-dehydro-3-deoxy-6-phosphogalactonate aldolase -6.0 Yes
D-Galactose ABZR86_RS01225 2-dehydro-3-deoxygalactonokinase dgoK (EC 2.7.1.58) (from data) -4.9 Yes
D-Galactose ABZR86_RS01235 aldose epimerase family protein +1.5 Yes
D-Galactose ABZR86_RS01750 heavy metal translocating P-type ATPase -1.6 Yes
D-Galactose ABZR86_RS01820 YoaK family protein +1.5  
D-Galactose ABZR86_RS05675 MASE1 domain-containing protein +1.8  
D-Galactose ABZR86_RS06685 acireductone dioxygenase -2.7  
D-Galactose ABZR86_RS07535 acyl-CoA dehydrogenase family protein +2.3  
D-Galactose ABZR86_RS08650 FUSC family protein -1.5  
D-Galactose ABZR86_RS09890 lytic transglycosylase domain-containing protein +1.2  
D-Galactose ABZR86_RS10010 class I SAM-dependent methyltransferase +1.3  
D-Galactose ABZR86_RS10350 methyl-accepting chemotaxis protein +1.5  
D-Galactose ABZR86_RS11030 HAMP domain-containing sensor histidine kinase +1.3  
D-Galactose ABZR86_RS11070 sigma-54 dependent transcriptional regulator +1.8  
D-Galactose ABZR86_RS11100 fructose porter FruP (from data) +2.7  
D-Galactose ABZR86_RS11105 Fructokinase (EC 2.7.1.4) (from data) -7.4  
D-Galactose ABZR86_RS11110 AGE family epimerase/isomerase +1.3  
D-Galactose ABZR86_RS12490 AMP nucleosidase -1.1  
D-Galactose ABZR86_RS12655 sensor histidine kinase +1.1  
D-Galactose ABZR86_RS13645 phasin family protein +2.1  
D-Galactose ABZR86_RS14005 hypothetical protein -1.9  
D-Galactose ABZR86_RS14370 hypothetical protein -1.1  
D-Galactose ABZR86_RS15600 NAD(P)-dependent oxidoreductase -1.1  
D-Galactose ABZR86_RS15740 DUF1481 domain-containing protein -1.8  
D-Galactose ABZR86_RS16515 MFS transporter -3.2  
D-Galactose ABZR86_RS16810 methylglyoxal synthase -4.4  
D-Galactose ABZR86_RS18530 glycosyltransferase +1.3  
D-Galactose ABZR86_RS18535 lipopolysaccharide biosynthesis protein +2.2  
D-Galactose ABZR86_RS18550 glycosyltransferase family 4 protein +1.2  
D-Galactose ABZR86_RS18555 asparagine synthase (glutamine-hydrolyzing) +1.6  
D-Galactose ABZR86_RS18890 energy transducer TonB +1.8  
D-Galactose ABZR86_RS21255 DUF2007 domain-containing protein -1.5  
D-Glucose ABZR86_RS08455 C39 family peptidase -1.3  
L-Alanine ABZR86_RS00470 methionine ABC transporter permease -1.3  
L-Alanine ABZR86_RS01395 Alanine dehydrogenase (EC 1.4.1.1) (from data) -3.6 Yes
L-Alanine ABZR86_RS01400 Lrp/AsnC family transcriptional regulator -2.1 Yes
L-Alanine ABZR86_RS01750 heavy metal translocating P-type ATPase -1.3  
L-Alanine ABZR86_RS15585 3-hydroxybutyrate dehydrogenase -1.1  
L-Alanine ABZR86_RS15715 glutamine amidotransferase -2.6  
L-Alanine ABZR86_RS19810 ribosome-associated translation inhibitor RaiA -1.1  
L-Alanine ABZR86_RS21660 amino acid permease +1.9  
L-Alanine ABZR86_RS22180 DMT family transporter -1.6  
L-Proline ABZR86_RS00460 nicotinate phosphoribosyltransferase -1.4  
N-Acetyl-D-Glucosamine ABZR86_RS16060 sugar MFS transporter -2.5 Yes
Sodium pyruvate ABZR86_RS08475 2-methylcitrate synthase -1.3  
Sodium pyruvate ABZR86_RS15190 PAS domain-containing hybrid sensor histidine kinase/response regulator -2.5 Yes
Sodium pyruvate ABZR86_RS15195 response regulator transcription factor -2.4 Yes
Sodium pyruvate ABZR86_RS19265 YbdD/YjiX family protein -2.3 Yes
Sodium pyruvate ABZR86_RS19270 carbon starvation CstA family protein -2.2 Yes
a-Cyclodextrin ABZR86_RS16980 TonB-dependent receptor -3.2  
a-Cyclodextrin ABZR86_RS16985 Alpha-amylase (EC 3.2.1.1) (from data) -3.7 Yes
a-Cyclodextrin ABZR86_RS17005 MFS transporter -3.6 Yes
a-Cyclodextrin ABZR86_RS17010 LacI family DNA-binding transcriptional regulator -3.3 Yes