| Condition | Gene | Description | Fitness | Cons. |
|---|
| 2-Deoxy-D-Ribose | RR42_RS05465 | 2-isopropylmalate synthase | -1.5 | |
| 2-Deoxy-D-Ribose | RR42_RS05715 | acyl-CoA dehydrogenase | -2.1 | Yes |
| 2-Deoxy-D-Ribose | RR42_RS05745 | aminoglycoside phosphotransferase | -1.1 | Yes |
| 2-Deoxy-D-Ribose | RR42_RS11080 | phenylacetic acid degradation protein | variable | |
| 2-Deoxy-D-Ribose | RR42_RS13570 | hydroxyacylglutathione hydrolase | -1.1 | |
| 2-Deoxy-D-Ribose | RR42_RS22950 | cytochrome C550 | +1.4 | |
| 2-Deoxy-D-Ribose | RR42_RS29910 | LacI family transcriptional regulator | -1.3 | |
| 2-Deoxy-D-Ribose | RR42_RS33510 | permease | -2.3 | |
| 2-Deoxy-D-Ribose | RR42_RS34380 | dihydrolipoamide dehydrogenase | -1.6 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS00080 | hypothetical protein | -1.2 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS00415 | ABC transporter permease | +1.1 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS02080 | ribosome hibernation promoting factor | +1.1 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS02565 | LysR family transcriptional regulator | +1.7 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS03060 | MFS transporter | -1.1 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS03140 | molybdenum cofactor biosynthesis protein MoaC | -4.4 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS03830 | molybdenum ABC transporter ATPase | -4.2 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS03835 | molybdate ABC transporter permease | -3.2 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS03840 | molybdate ABC transporter substrate-binding protein | -2.8 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS05250 | OHCU decarboxylase | -4.8 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS05255 | allantoinase | -5.4 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS05270 | 5-hydroxyisourate hydrolase | -5.4 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS05275 | membrane protein | -3.5 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS05325 | adenine deaminase | -2.0 | Yes |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS05335 | aldehyde oxidase | -4.0 | Yes |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS05340 | FAD-binding molybdopterin dehydrogenase | -3.5 | Yes |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS05345 | LysR family transcriptional regulator | -3.1 | Yes |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS06665 | reverse transcriptase | +1.2 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS11445 | Fis family transcriptional regulator | -1.4 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS12530 | molybdenum cofactor biosynthesis protein MoaA | -4.2 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS12555 | alkyl hydroperoxide reductase | -2.1 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS14135 | SAM-dependent methyltransferase | +1.1 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS14490 | aconitate hydratase | +1.1 | Yes |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS15445 | 7-cyano-7-deazaguanine synthase | -2.6 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS16140 | TonB-dependent receptor | -1.4 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS17380 | catalase | -2.4 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS18000 | cell division protein ZapD | +1.5 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS19465 | AsnC family transcriptional regulator | -2.7 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS19780 | peptidase M20 | -3.8 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS19785 | allantoate amidohydrolase | -4.4 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS19850 | glyoxylate carboligase | -3.2 | Yes |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS22950 | cytochrome C550 | +1.6 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS29910 | LacI family transcriptional regulator | -1.8 | |
| 2-Deoxyadenosine 5-monophosphate | RR42_RS33510 | permease | -2.8 | |
| 4-Hydroxybenzoic Acid | RR42_RS01400 | 5-formyltetrahydrofolate cyclo-ligase | -2.9 | |
| 4-Hydroxybenzoic Acid | RR42_RS02495 | cardiolipin synthase; exported protein | -1.7 | Yes |
| 4-Hydroxybenzoic Acid | RR42_RS03025 | Inner membrane protein (FUSC-like) required for 4-hydroxybenzoate transport, together with NodT, MFP, and DUF1656 proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03030) (from data) | -2.8 | Yes |
| 4-Hydroxybenzoic Acid | RR42_RS03030 | required for 4-hydroxybenzoate transport, together with NodT, MFP, and FUSC proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03025) (from data) | -3.5 | |
| 4-Hydroxybenzoic Acid | RR42_RS03040 | Outer membrane protein (NodT-like) required for 4-hydroxybenzoate transport, together with FUSC, MFP, and DUF1656 proteins (RR42_RS03025, RR42_RS03035, and RR42_RS03030) (from data) | -3.3 | Yes |
| 4-Hydroxybenzoic Acid | RR42_RS21940 | 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) (from data) | -4.3 | Yes |
| 4-Hydroxybenzoic Acid | RR42_RS29055 | AraC family transcriptional regulator | -4.4 | Yes |
| 4-Hydroxybenzoic Acid | RR42_RS32055 | 3-carboxymuconate cycloisomerase PcaB (EC 5.5.1.2) (from data) | -5.4 | Yes |
| 4-Hydroxybenzoic Acid | RR42_RS32060 | protocatechuate 3,4-dioxygenase | -4.8 | Yes |
| 4-Hydroxybenzoic Acid | RR42_RS32065 | protocatechuate 3,4-dioxygenase, beta subunit (EC 1.13.11.3) (from data) | -4.7 | Yes |
| 4-Hydroxybenzoic Acid | RR42_RS35920 | 3-oxoadipate CoA-transferase | -2.2 | Yes |
| D-Fructose | RR42_RS03355 | N-acylmannosamine kinase | -1.9 | |
| D-Fructose | RR42_RS03375 | glucose-6-phosphate dehydrogenase | -3.1 | |
| D-Gluconic Acid sodium salt | RR42_RS06130 | Gluconokinase (EC 2.7.1.12) (from data) | -4.1 | Yes |
| D-Gluconic Acid sodium salt | RR42_RS17690 | 3-dehydroquinate dehydratase | -2.3 | |
| D-Gluconic Acid sodium salt | RR42_RS28835 | gluconate:H+ symporter (gntT) (from data) | -2.5 | Yes |
| D-Gluconic Acid sodium salt | RR42_RS28860 | 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) (from data) | -2.5 | |
| D-Gluconic Acid sodium salt | RR42_RS33205 | UDP-glucose 6-dehydrogenase | -2.3 | |
| D-Gluconic Acid sodium salt | RR42_RS36475 | SpoVR family protein | -1.1 | |
| D-Gluconic Acid sodium salt | RR42_RS36485 | serine/threonine protein kinase | -1.1 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS00770 | 5-methyltetrahydrofolate--homocysteine methyltransferase | -1.3 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS02130 | membrane protein | +1.2 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS02305 | porin | -3.4 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS03105 | integral membrane protein | -3.4 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS03140 | molybdenum cofactor biosynthesis protein MoaC | -2.4 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS03280 | LysR family transcriptional regulator | -4.0 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS03830 | molybdenum ABC transporter ATPase | -2.1 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS05250 | OHCU decarboxylase | -3.2 | Yes |
| Deoxyribonucleic acid from herring sperm | RR42_RS05255 | allantoinase | -3.5 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS05270 | 5-hydroxyisourate hydrolase | -3.2 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS05275 | membrane protein | -2.0 | Yes |
| Deoxyribonucleic acid from herring sperm | RR42_RS05335 | aldehyde oxidase | -1.8 | Yes |
| Deoxyribonucleic acid from herring sperm | RR42_RS05340 | FAD-binding molybdopterin dehydrogenase | -2.3 | Yes |
| Deoxyribonucleic acid from herring sperm | RR42_RS05345 | LysR family transcriptional regulator | -1.9 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS05350 | tungsten ABC transporter substrate-binding protein | +1.1 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS05415 | membrane protein | +1.8 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS12965 | glycerol-3-phosphate transporter permease | -1.1 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS12970 | glycerol-3-phosphate ABC transporter substrate-binding protein | -1.1 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS13915 | ATPase | +1.1 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS13960 | hypothetical protein | -1.5 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS14425 | leucine ABC transporter substrate-binding protein | -1.3 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS14490 | aconitate hydratase | -4.1 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS17380 | catalase | -2.2 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS18330 | sulfonate ABC transporter permease | -1.7 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS18900 | membrane protein | -2.0 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS19780 | peptidase M20 | -3.0 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS19785 | allantoate amidohydrolase | -3.5 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS19850 | glyoxylate carboligase | -2.2 | Yes |
| Deoxyribonucleic acid from herring sperm | RR42_RS20020 | cytochrome C | +2.1 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS30405 | GntR family transcriptional regulator | -1.8 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS31385 | GntR family transcriptional regulator | variable | |
| Deoxyribonucleic acid from herring sperm | RR42_RS31760 | IclR family transcriptional regulator | variable | |
| Deoxyribonucleic acid from herring sperm | RR42_RS33090 | fumarate hydratase | variable | |
| Deoxyribonucleic acid from herring sperm | RR42_RS36130 | phytanoyl-CoA dioxygenase | +1.8 | |
| Deoxyribonucleic acid from herring sperm | RR42_RS36695 | heavy metal resistance protein CzcA | variable | |
| Disodium Glutarate | RR42_RS07285 | ABC transporter substrate-binding protein | -2.5 | |
| Disodium Glutarate | RR42_RS12505 | TetR family transcriptional regulator | +1.2 | |
| Disodium Glutarate | RR42_RS20275 | ABC transporter permease | -1.0 | |
| Disodium Glutarate | RR42_RS20530 | phosphoenolpyruvate carboxykinase | +1.2 | |
| Disodium Glutarate | RR42_RS25845 | isocitrate lyase | -1.4 | |
| Disodium Glutarate | RR42_RS36125 | IclR family transcriptional regulator | +2.2 | Yes |
| Dodecandioic acid | RR42_RS05590 | hypothetical protein | -4.3 | |
| Dodecandioic acid | RR42_RS21405 | LysR family transcriptional regulator | -3.1 | Yes |
| Dodecandioic acid | RR42_RS36915 | LysR family transcriptional regulator | -1.1 | |
| Ethanol | RR42_RS03065 | membrane protein | -1.6 | |
| Ethanol | RR42_RS03070 | histidine kinase | -2.2 | |
| Ethanol | RR42_RS03075 | transcriptional regulator | -2.6 | |
| Ethanol | RR42_RS03345 | recombinase XerD | -1.5 | |
| Ethanol | RR42_RS13875 | sodium:solute symporter | -1.3 | |
| Ethanol | RR42_RS17505 | NAD synthetase | -2.5 | |
| Ethanol | RR42_RS34260 | Alcohol dehydrogenase (EC 1.1.1.1) (from data) | -2.0 | |
| Heptanoic acid | RR42_RS03025 | Inner membrane protein (FUSC-like) required for 4-hydroxybenzoate transport, together with NodT, MFP, and DUF1656 proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03030) (from data) | -2.1 | |
| Heptanoic acid | RR42_RS03030 | required for 4-hydroxybenzoate transport, together with NodT, MFP, and FUSC proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03025) (from data) | -2.2 | |
| Heptanoic acid | RR42_RS03040 | Outer membrane protein (NodT-like) required for 4-hydroxybenzoate transport, together with FUSC, MFP, and DUF1656 proteins (RR42_RS03025, RR42_RS03035, and RR42_RS03030) (from data) | -2.7 | |
| Heptanoic acid | RR42_RS15280 | long-chain fatty acid--CoA ligase | -1.9 | |
| Heptanoic acid | RR42_RS37325 | cellulose synthase | +2.0 | |
| Heptanoic acid | RR42_RS37335 | cellulose synthase BcsB subunit | +1.8 | |
| Heptanoic acid | RR42_RS37340 | cellulose synthase | +1.9 | |
| Heptanoic acid | RR42_RS37345 | chromosome partitioning protein ParA | +1.8 | |
| Heptanoic acid | RR42_RS37350 | hypothetical protein | +2.0 | |
| Heptanoic acid | RR42_RS37355 | cellulose synthase | +1.2 | |
| Hexanoic acid | RR42_RS04580 | Butyryl-CoA dehydrogenase (EC 1.3.8.1) (from data) | -3.7 | Yes |
| Hexanoic acid | RR42_RS15280 | long-chain fatty acid--CoA ligase | -1.3 | |
| L-Alanine | RR42_RS34260 | Alcohol dehydrogenase (EC 1.1.1.1) (from data) | -1.2 | |
| L-Asparagine | RR42_RS03985 | histidine kinase | -1.3 | Yes |
| L-Histidine | RR42_RS00775 | methionine synthase | -1.0 | |
| L-Histidine | RR42_RS11460 | pyrroloquinoline quinone biosynthesis protein PqqB | +3.6 | Yes |
| L-Histidine | RR42_RS11465 | pyrroloquinoline quinone biosynthesis protein PqqC | +3.5 | |
| L-Histidine | RR42_RS14030 | DNA recombination protein RecO | -1.9 | Yes |
| L-Histidine | RR42_RS14635 | proline-specific permease | +3.4 | Yes |
| L-Histidine | RR42_RS14640 | histidine ammonia-lyase | +2.5 | Yes |
| L-Histidine | RR42_RS16895 | N-formylglutamate deformylase (EC 3.5.1.68) (from data) | -2.4 | Yes |
| L-Histidine | RR42_RS16905 | Imidazolonepropionase (EC 3.5.2.7) (from data) | -3.1 | Yes |
| L-Leucine | RR42_RS04880 | coproporphyrinogen III oxidase | -1.6 | |
| L-Leucine | RR42_RS23735 | phenylacetyl-CoA 1,2-epoxidase, structural subunit (EC 1.14.13.149) (from data) | -1.0 | |
| L-Leucine | RR42_RS28800 | isocitrate dehydrogenase | +1.3 | |
| L-Leucine | RR42_RS34245 | branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused (from data) | -2.7 | Yes |
| L-Phenylalanine | RR42_RS20365 | phenylalanine-4-hydroxylase | -5.0 | Yes |
| L-Phenylalanine | RR42_RS31275 | Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) | -2.3 | Yes |
| L-Phenylalanine | RR42_RS33490 | Aromatic-amino-acid aminotransferase (EC 2.6.1.57) (from data) | -2.0 | Yes |
| L-Proline | RR42_RS02565 | LysR family transcriptional regulator | -1.4 | |
| L-Proline | RR42_RS03070 | histidine kinase | -1.6 | |
| L-Proline | RR42_RS03075 | transcriptional regulator | -1.6 | |
| L-Proline | RR42_RS11460 | pyrroloquinoline quinone biosynthesis protein PqqB | -1.5 | |
| L-Proline | RR42_RS11465 | pyrroloquinoline quinone biosynthesis protein PqqC | -1.8 | |
| L-Proline | RR42_RS20125 | L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) | -4.2 | Yes |
| L-Proline | RR42_RS30405 | GntR family transcriptional regulator | -1.1 | |
| L-Threonine | RR42_RS25930 | glycine dehydrogenase (deaminating) (EC 1.4.1.10) (from data) | -4.9 | |
| L-Threonine | RR42_RS28295 | 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) (from data) | -2.3 | |
| L-Threonine | RR42_RS28300 | L-threonine 3-dehydrogenase (EC 1.1.1.103) (from data) | -2.5 | |
| L-Threonine | RR42_RS28305 | L-threonine:H+ symporter (from data) | -1.6 | |
| L-Threonine | RR42_RS36130 | phytanoyl-CoA dioxygenase | -1.6 | |
| L-Tryptophan | RR42_RS05715 | acyl-CoA dehydrogenase | -1.6 | |
| L-Tryptophan | RR42_RS13535 | 2-aminobenzoate-CoA ligase (EC 6.2.1.32) (from data) | -1.2 | Yes |
| L-Tryptophan | RR42_RS13550 | 3-hydroxyacyl-CoA dehydrogenase | -3.7 | Yes |
| L-Tryptophan | RR42_RS13555 | anthraniloyl-CoA monooxygenase (EC 1.14.13.40) (from data) | -3.3 | Yes |
| L-Tryptophan | RR42_RS15375 | AsnC family transcriptional regulator | -3.6 | Yes |
| L-Tryptophan | RR42_RS15385 | Kynureninase (EC 3.7.1.3) (from data) | -3.9 | Yes |
| L-Tryptophan | RR42_RS15390 | Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) | -3.4 | Yes |
| L-Tryptophan | RR42_RS17505 | NAD synthetase | -2.0 | |
| Octanoic acid | RR42_RS03025 | Inner membrane protein (FUSC-like) required for 4-hydroxybenzoate transport, together with NodT, MFP, and DUF1656 proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03030) (from data) | -2.5 | |
| Octanoic acid | RR42_RS03030 | required for 4-hydroxybenzoate transport, together with NodT, MFP, and FUSC proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03025) (from data) | -2.4 | |
| Octanoic acid | RR42_RS03040 | Outer membrane protein (NodT-like) required for 4-hydroxybenzoate transport, together with FUSC, MFP, and DUF1656 proteins (RR42_RS03025, RR42_RS03035, and RR42_RS03030) (from data) | -2.5 | |
| Octanoic acid | RR42_RS03245 | D-alanyl-D-alanine carboxypeptidase | -1.3 | |
| Octanoic acid | RR42_RS04580 | Butyryl-CoA dehydrogenase (EC 1.3.8.1) (from data) | -4.0 | |
| Octanoic acid | RR42_RS06225 | phosphoesterase | -1.5 | |
| Octanoic acid | RR42_RS17305 | ion transporter | -1.4 | Yes |
| Octanoic acid | RR42_RS37325 | cellulose synthase | +1.5 | |
| Octanoic acid | RR42_RS37335 | cellulose synthase BcsB subunit | +1.5 | |
| Octanoic acid | RR42_RS37340 | cellulose synthase | +1.5 | |
| Octanoic acid | RR42_RS37345 | chromosome partitioning protein ParA | +1.6 | |
| Octanoic acid | RR42_RS37350 | hypothetical protein | +1.6 | |
| Phenylacetic acid | RR42_RS05760 | 3-hydroxyacyl-CoA dehydrogenase | -2.7 | Yes |
| Phenylacetic acid | RR42_RS05985 | esterase | -2.0 | |
| Phenylacetic acid | RR42_RS18250 | enoyl-CoA hydratase | -1.7 | Yes |
| Phenylacetic acid | RR42_RS21185 | AMP nucleosidase | -1.2 | |
| Phenylacetic acid | RR42_RS23725 | phenylacetate-CoA oxygenase | -3.8 | Yes |
| Phenylacetic acid | RR42_RS23735 | phenylacetyl-CoA 1,2-epoxidase, structural subunit (EC 1.14.13.149) (from data) | -2.9 | Yes |
| Phenylacetic acid | RR42_RS23745 | phenylacetic acid degradation protein | -4.0 | Yes |
| Phenylacetic acid | RR42_RS23750 | aldehyde dehydrogenase | -2.5 | Yes |
| Phenylacetic acid | RR42_RS23755 | phenylacetate--CoA ligase | -1.8 | Yes |
| Pimelic acid | RR42_RS01545 | TetR family transcriptional regulator | -1.3 | |
| Pimelic acid | RR42_RS04880 | coproporphyrinogen III oxidase | -1.6 | |
| Pimelic acid | RR42_RS05745 | aminoglycoside phosphotransferase | +1.2 | |
| Pimelic acid | RR42_RS06465 | O-acetylhomoserine aminocarboxypropyltransferase | -1.7 | |
| Pimelic acid | RR42_RS07540 | ABC transporter permease | -1.1 | |
| Pimelic acid | RR42_RS07545 | branched-chain amino acid ABC transporter substrate-binding protein | -1.0 | |
| Pimelic acid | RR42_RS08660 | hypothetical protein | -1.9 | |
| Pimelic acid | RR42_RS10610 | hypothetical protein | -1.2 | |
| Pimelic acid | RR42_RS11130 | mannosyltransferase | -1.8 | Yes |
| Pimelic acid | RR42_RS11135 | branched-chain amino acid ABC transporter substrate-binding protein | -1.8 | |
| Pimelic acid | RR42_RS11140 | ABC transporter permease | -1.7 | Yes |
| Pimelic acid | RR42_RS11145 | ABC transporter permease | -2.4 | |
| Pimelic acid | RR42_RS11150 | branched-chain amino acid ABC transporter substrate-binding protein | -1.8 | Yes |
| Pimelic acid | RR42_RS11155 | long-chain fatty acid--CoA ligase | -1.8 | Yes |
| Pimelic acid | RR42_RS14840 | IclR family transcriptional regulator | +1.3 | |
| Pimelic acid | RR42_RS18535 | ABC transporter substrate-binding protein | -4.0 | |
| Pimelic acid | RR42_RS18540 | long-chain fatty acid--CoA ligase | -1.8 | |
| Pimelic acid | RR42_RS31120 | cupin | +2.4 | |
| Pimelic acid | RR42_RS31130 | hypothetical protein | +1.9 | |
| Pimelic acid | RR42_RS31160 | IclR family transcriptional regulator | +5.2 | |
| Pimelic acid | RR42_RS31385 | GntR family transcriptional regulator | -2.4 | |
| Pimelic acid | RR42_RS34770 | ABC transporter substrate-binding protein | -1.8 | |
| Pimelic acid | RR42_RS34780 | IclR family transcriptional regulator | +1.7 | |
| Pimelic acid | RR42_RS34870 | hypothetical protein | -1.4 | |
| Pimelic acid | RR42_RS35085 | MarR family transcriptional regulator | -1.6 | |
| Pimelic acid | RR42_RS36695 | heavy metal resistance protein CzcA | -3.8 | |
| Protocatechuic Acid | RR42_RS04545 | deacetylase | -1.6 | |
| Protocatechuic Acid | RR42_RS05985 | esterase | -1.5 | |
| Protocatechuic Acid | RR42_RS13370 | microcin ABC transporter ATP-binding protein | +2.1 | |
| Protocatechuic Acid | RR42_RS13375 | peptide ABC transporter permease | +2.3 | |
| Protocatechuic Acid | RR42_RS13380 | microcin ABC transporter permease | +2.2 | |
| Protocatechuic Acid | RR42_RS13385 | peptide ABC transporter substrate-binding protein | +2.1 | |
| Protocatechuic Acid | RR42_RS15395 | IclR family transcriptional regulator | -1.5 | |
| Protocatechuic Acid | RR42_RS18805 | peptidase | +1.7 | |
| Protocatechuic Acid | RR42_RS21940 | 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) (from data) | +5.9 | |
| Protocatechuic Acid | RR42_RS26235 | GntR family transcriptional regulator | -2.0 | |
| Protocatechuic Acid | RR42_RS26295 | GntR family transcriptional regulator | +1.5 | |
| Protocatechuic Acid | RR42_RS28940 | Bcr/CflA family drug resistance efflux transporter | +1.6 | |
| Protocatechuic Acid | RR42_RS30505 | salicylate hydroxylase | +3.6 | |
| Protocatechuic Acid | RR42_RS30515 | 5-carboxymethyl-2-hydroxymuconate isomerase | +5.2 | |
| Protocatechuic Acid | RR42_RS30520 | gentisate 1,2-dioxygenase | +3.1 | |
| Protocatechuic Acid | RR42_RS30525 | LysR family transcriptional regulator | +2.2 | |
| Protocatechuic Acid | RR42_RS30955 | histidine kinase | +2.0 | |
| Protocatechuic Acid | RR42_RS31695 | hypothetical protein | +7.0 | |
| Protocatechuic Acid | RR42_RS32060 | protocatechuate 3,4-dioxygenase | -4.6 | Yes |
| Protocatechuic Acid | RR42_RS32065 | protocatechuate 3,4-dioxygenase, beta subunit (EC 1.13.11.3) (from data) | -4.2 | Yes |
| Protocatechuic Acid | RR42_RS32565 | MFS transporter | -1.8 | |
| Protocatechuic Acid | RR42_RS32970 | benzoylformate decarboxylase | +5.1 | Yes |
| Protocatechuic Acid | RR42_RS34380 | dihydrolipoamide dehydrogenase | -2.4 | |
| Protocatechuic Acid | RR42_RS35455 | membrane protein | +1.7 | |
| Protocatechuic Acid | RR42_RS37040 | sulfite reductase subunit alpha | +3.2 | |
| Protocatechuic Acid | RR42_RS37050 | ABC transporter permease | +2.4 | |
| Protocatechuic Acid | RR42_RS37055 | hypothetical protein | +3.2 | |
| Protocatechuic Acid | RR42_RS37060 | membrane protein | +3.4 | |
| Sodium D-Lactate | RR42_RS03060 | MFS transporter | -1.3 | Yes |
| Sodium D-Lactate | RR42_RS03070 | histidine kinase | -1.6 | Yes |
| Sodium D-Lactate | RR42_RS03075 | transcriptional regulator | -1.6 | |
| Sodium D-Lactate | RR42_RS17290 | LysR family transcriptional regulator | -1.9 | |
| Sodium D-Lactate | RR42_RS17300 | D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) (from data) | -2.2 | Yes |
| Sodium adipate | RR42_RS01545 | TetR family transcriptional regulator | -1.7 | |
| Sodium adipate | RR42_RS02080 | ribosome hibernation promoting factor | +1.7 | |
| Sodium adipate | RR42_RS02330 | trehalose-6-phosphate synthase | -1.7 | |
| Sodium adipate | RR42_RS02900 | LysR family transcriptional regulator | +1.2 | |
| Sodium adipate | RR42_RS07515 | transcriptional regulator | +1.4 | |
| Sodium adipate | RR42_RS07535 | ABC transporter permease | -1.4 | |
| Sodium adipate | RR42_RS07540 | ABC transporter permease | -1.5 | |
| Sodium adipate | RR42_RS07545 | branched-chain amino acid ABC transporter substrate-binding protein | -1.7 | |
| Sodium adipate | RR42_RS09500 | dehydrogenase | -1.6 | |
| Sodium adipate | RR42_RS10610 | hypothetical protein | -1.3 | |
| Sodium adipate | RR42_RS11095 | 3-hydroxyacyl-CoA dehydrogenase | +2.8 | |
| Sodium adipate | RR42_RS11130 | mannosyltransferase | -2.2 | |
| Sodium adipate | RR42_RS11135 | branched-chain amino acid ABC transporter substrate-binding protein | -2.0 | |
| Sodium adipate | RR42_RS11140 | ABC transporter permease | -2.0 | |
| Sodium adipate | RR42_RS11145 | ABC transporter permease | -3.1 | |
| Sodium adipate | RR42_RS11150 | branched-chain amino acid ABC transporter substrate-binding protein | -2.2 | |
| Sodium adipate | RR42_RS11155 | long-chain fatty acid--CoA ligase | -1.4 | |
| Sodium adipate | RR42_RS12660 | hypothetical protein | +1.3 | |
| Sodium adipate | RR42_RS14065 | serine peptidase | +1.5 | |
| Sodium adipate | RR42_RS15155 | CoA-transferase | +2.1 | |
| Sodium adipate | RR42_RS15585 | lytic transglycosylase | -1.3 | |
| Sodium adipate | RR42_RS18150 | long-chain fatty acid--CoA ligase | -1.2 | |
| Sodium adipate | RR42_RS20420 | maltoporin | -1.4 | |
| Sodium adipate | RR42_RS20530 | phosphoenolpyruvate carboxykinase | -1.1 | |
| Sodium adipate | RR42_RS21255 | LysR family transcriptional regulator | +3.6 | |
| Sodium adipate | RR42_RS21260 | isovaleryl-CoA dehydrogenase | +1.5 | |
| Sodium adipate | RR42_RS21405 | LysR family transcriptional regulator | -3.3 | Yes |
| Sodium adipate | RR42_RS21425 | hypothetical protein | -2.1 | |
| Sodium adipate | RR42_RS21430 | alpha-ketoglutarate permease | -1.5 | Yes |
| Sodium adipate | RR42_RS21530 | IclR family transcriptional regulator | -1.9 | |
| Sodium adipate | RR42_RS22490 | IclR family transcriptional regulator | +7.5 | |
| Sodium adipate | RR42_RS24265 | hypothetical protein | -1.0 | |
| Sodium adipate | RR42_RS24350 | malyl-CoA thiolesterase | +1.5 | |
| Sodium adipate | RR42_RS27395 | GntR family transcriptional regulator | +2.7 | |
| Sodium adipate | RR42_RS27405 | aminotransferase | +1.4 | |
| Sodium adipate | RR42_RS29230 | TetR family transcriptional regulator | +1.2 | |
| Sodium adipate | RR42_RS29410 | acetyl-CoA carboxylase | +1.8 | |
| Sodium adipate | RR42_RS29420 | 3-methylcrotonyl-CoA carboxylase | +1.2 | |
| Sodium adipate | RR42_RS29970 | IclR family transcriptional regulator | +4.1 | |
| Sodium adipate | RR42_RS31120 | cupin | +1.4 | |
| Sodium adipate | RR42_RS31160 | IclR family transcriptional regulator | +2.5 | |
| Sodium adipate | RR42_RS32250 | ABC transporter | -1.4 | |
| Sodium adipate | RR42_RS35485 | hypothetical protein | -1.2 | |
| Sodium adipate | RR42_RS35905 | LacI family transcriptional regulator | -3.5 | |
| Sodium adipate | RR42_RS35920 | 3-oxoadipate CoA-transferase | +5.5 | |
| Sodium adipate | RR42_RS35945 | DNA-binding protein | +1.1 | |
| Sodium adipate | RR42_RS36125 | IclR family transcriptional regulator | +7.7 | |
| Sodium adipate | RR42_RS36595 | acyl-CoA dehydrogenase | +2.1 | |
| Sodium adipate | RR42_RS36695 | heavy metal resistance protein CzcA | -3.7 | |
| Sodium adipate | RR42_RS37010 | cyclase | +1.2 | |
| Sodium butyrate | RR42_RS04580 | Butyryl-CoA dehydrogenase (EC 1.3.8.1) (from data) | -2.7 | Yes |
| Sodium butyrate | RR42_RS27905 | AraC family transcriptional regulator | -2.0 | |
| Sodium propionate | RR42_RS01040 | cobalamin biosynthesis protein CobW | -1.2 | |
| Sodium propionate | RR42_RS10135 | biofilm PGA synthesis protein PgaC | -1.3 | |
| Sodium propionate | RR42_RS10140 | 8-amino-7-oxononanoate synthase | -1.3 | |
| Sodium propionate | RR42_RS25655 | pyruvate carboxylase | -1.8 | |
| Sodium propionate | RR42_RS27910 | Crp/Fnr family transcriptional regulator | +1.6 | |
| Sodium pyruvate | RR42_RS20510 | small component of pyruvate transporter (ybdD-like) (from data) | -2.7 | Yes |
| Sodium pyruvate | RR42_RS20515 | large component of pyruvate transporter (cstA-like) (from data) | -2.3 | Yes |
| Sodium pyruvate | RR42_RS20520 | histidine kinase | -2.2 | Yes |
| Sodium pyruvate | RR42_RS20525 | LuxR family transcriptional regulator | -1.9 | Yes |
| Sodium succinate dibasic hexahydrate | RR42_RS08660 | hypothetical protein | -1.6 | |
| Suberic acid | RR42_RS10995 | hypothetical protein | -1.3 | |
| Suberic acid | RR42_RS21405 | LysR family transcriptional regulator | -3.5 | |
| Suberic acid | RR42_RS31160 | IclR family transcriptional regulator | +1.1 | |
| Trisodium citrate dihydrate | RR42_RS20625 | histidine kinase | -2.0 | |
| Trisodium citrate dihydrate | RR42_RS20635 | iron ABC transporter substrate-binding protein | -1.5 | Yes |
| Trisodium citrate dihydrate | RR42_RS27010 | D-3-phosphoglycerate dehydrogenase | -1.6 | |
| Trisodium citrate dihydrate | RR42_RS29530 | malate permease | -1.4 | Yes |
| Valeric acid | RR42_RS10140 | 8-amino-7-oxononanoate synthase | -1.3 | |
| a-Ketoglutaric acid disodium salt hydrate | RR42_RS14000 | excinuclease ABC subunit C | +1.4 | |
| a-Ketoglutaric acid disodium salt hydrate | RR42_RS15395 | IclR family transcriptional regulator | +2.0 | |