Specific Phenotypes for Ralstonia sp. UNC404CL21Col in carbon source experiments

Condition Gene Description Fitness Cons.
1,2-Propanediol ABZR87_RS07530 glutamate/aspartate ABC transporter permease GltK -1.9  
1,2-Propanediol ABZR87_RS15110 NADP-dependent malic enzyme -4.3  
3-Hydroxypropionate ABZR87_RS15110 NADP-dependent malic enzyme -5.0  
3-Hydroxypropionate ABZR87_RS17075 acyl-CoA thioesterase -1.4  
4-Hydroxybenzoic Acid ABZR87_RS00505 LysR family transcriptional regulator -5.0  
4-Hydroxybenzoic Acid ABZR87_RS00510 MFS transporter -5.7  
4-Hydroxybenzoic Acid ABZR87_RS01265 sensor domain-containing diguanylate cyclase -1.3  
4-Hydroxybenzoic Acid ABZR87_RS10040 nicotinate phosphoribosyltransferase -1.9  
4-Hydroxybenzoic Acid ABZR87_RS12085 protocatechuate 3,4-dioxygenase subunit beta -5.2 Yes
4-Hydroxybenzoic Acid ABZR87_RS15740 4-hydroxybenzoate 3-monooxygenase -5.2 Yes
4-Hydroxybenzoic Acid ABZR87_RS15745 LysR family transcriptional regulator -5.6 Yes
4-Hydroxybenzoic Acid ABZR87_RS15780 3-oxoadipate enol-lactonase -5.5 Yes
4-Hydroxybenzoic Acid ABZR87_RS15785 3-carboxy-cis,cis-muconate cycloisomerase -5.1 Yes
4-Hydroxybenzoic Acid ABZR87_RS15880 bifunctional glycoside hydrolase 114/ polysaccharide deacetylase family protein -3.3  
Azelaic acid ABZR87_RS15590 DUF2957 domain-containing protein +1.1  
Beta-alanine ABZR87_RS01340 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha -1.4  
Beta-alanine ABZR87_RS01350 NAD(P) transhydrogenase subunit alpha -1.3  
Beta-alanine ABZR87_RS01355 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta -1.1  
Beta-alanine ABZR87_RS09565 Lrp/AsnC ligand binding domain-containing protein -1.7 Yes
Beta-alanine ABZR87_RS11590 isocitrate lyase -1.3  
Beta-alanine ABZR87_RS13745 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -3.5  
Beta-alanine ABZR87_RS16075 trimeric intracellular cation channel family protein -2.3  
Beta-alanine ABZR87_RS19655 PLP-dependent aminotransferase family protein -4.4  
Beta-alanine ABZR87_RS19660 aspartate aminotransferase family protein -5.2 Yes
Beta-alanine ABZR87_RS19665 CoA-acylating methylmalonate-semialdehyde dehydrogenase -5.4 Yes
Beta-alanine ABZR87_RS19835 D-amino acid dehydrogenase -1.1  
D-Galactose ABZR87_RS01445 galactonate dehydratase -4.8 Yes
D-Galactose ABZR87_RS01465 SMP-30/gluconolactonase/LRE family protein -4.2 Yes
D-Galactose ABZR87_RS01470 L-arabinose ABC transporter permease AraH -4.5 Yes
D-Galactose ABZR87_RS01475 L-arabinose ABC transporter ATP-binding protein AraG -5.2 Yes
D-Galactose ABZR87_RS01480 arabinose ABC transporter substrate-binding protein -3.6 Yes
D-Galactose ABZR87_RS01490 porin -5.8 Yes
D-Galactose ABZR87_RS01495 transcriptional regulator GcvA -5.2  
D-Galactose ABZR87_RS01520 IlvD/Edd family dehydratase +1.2  
D-Galactose ABZR87_RS01525 MFS transporter +1.0  
D-Galactose ABZR87_RS01530 dihydrodipicolinate synthase family protein +1.1 Yes
D-Galactose ABZR87_RS01535 Gfo/Idh/MocA family oxidoreductase +1.2 Yes
D-Galactose ABZR87_RS01540 arabinose ABC transporter substrate-binding protein +1.3  
D-Galactose ABZR87_RS01545 L-arabinose ABC transporter ATP-binding protein AraG +1.0  
D-Glucose ABZR87_RS19110 MurR/RpiR family transcriptional regulator +1.5  
D-Xylose ABZR87_RS07345 hypothetical protein variable  
D-Xylose ABZR87_RS18215 DNA-binding transcriptional regulator -1.6 Yes
D-Xylose ABZR87_RS18220 D-xylose ABC transporter substrate-binding protein -1.9 Yes
D-Xylose ABZR87_RS18225 D-xylose ABC transporter ATP-binding protein -1.7 Yes
D-Xylose ABZR87_RS18230 sugar ABC transporter permease -1.7 Yes
D-Xylose ABZR87_RS18235 SDR family oxidoreductase -1.9 Yes
D-Xylose ABZR87_RS18240 SMP-30/gluconolactonase/LRE family protein -1.2 Yes
D-Xylose ABZR87_RS18245 fumarylacetoacetate hydrolase family protein -2.2 Yes
D-Xylose ABZR87_RS18260 IlvD/Edd family dehydratase -2.6 Yes
Disodium Glutarate ABZR87_RS16635 MFS family transporter -1.2 Yes
Dodecandioic acid ABZR87_RS00965 bifunctional anthranilate synthase component I family protein/class IV aminotransferase -2.0  
Dodecandioic acid ABZR87_RS02335 ubiquinol oxidase subunit II +1.9  
Dodecandioic acid ABZR87_RS06580 hypothetical protein -1.0  
Dodecandioic acid ABZR87_RS07865 LysR family transcriptional regulator +1.6  
Dodecandioic acid ABZR87_RS09075 DUF3318 domain-containing protein -2.0  
Dodecandioic acid ABZR87_RS10065 hypothetical protein -1.5  
Dodecandioic acid ABZR87_RS12340 8-amino-7-oxononanoate synthase -2.2  
Dodecandioic acid ABZR87_RS22930 universal stress protein -1.4  
Glycerol ABZR87_RS01135 FAD-linked oxidase C-terminal domain-containing protein -1.8  
Glycerol ABZR87_RS01150 glycolate oxidase subunit GlcF -1.7  
Glycerol ABZR87_RS03025 ABC transporter ATP-binding protein -2.4 Yes
Glycerol ABZR87_RS03035 sugar ABC transporter permease -1.7 Yes
Glycerol ABZR87_RS03040 carbohydrate ABC transporter permease -1.9 Yes
Glycerol ABZR87_RS03050 ABC transporter substrate-binding protein -3.8 Yes
Glycerol ABZR87_RS03055 glycerol kinase GlpK -3.9 Yes
Glycerol ABZR87_RS07100 DJ-1/PfpI family protein -1.6 Yes
Heptanoic acid ABZR87_RS00505 LysR family transcriptional regulator -1.9  
Heptanoic acid ABZR87_RS00510 MFS transporter -1.0  
Heptanoic acid ABZR87_RS03935 aminomethyl-transferring glycine dehydrogenase +1.6  
Heptanoic acid ABZR87_RS04970 glycosyltransferase family 39 protein +1.8  
Heptanoic acid ABZR87_RS07115 Na/Pi cotransporter family protein +1.4  
Heptanoic acid ABZR87_RS08775 protein-L-isoaspartate O-methyltransferase -2.4  
Heptanoic acid ABZR87_RS08855 lytic transglycosylase domain-containing protein -1.5  
Heptanoic acid ABZR87_RS09145 cyclopropane-fatty-acyl-phospholipid synthase family protein -1.6  
Heptanoic acid ABZR87_RS09870 VWA domain-containing protein -1.7  
Heptanoic acid ABZR87_RS09880 MoxR family ATPase -1.1  
Heptanoic acid ABZR87_RS09945 recombinase -2.0  
Heptanoic acid ABZR87_RS10520 3',5'-nucleoside bisphosphate phosphatase -1.9  
Heptanoic acid ABZR87_RS10995 NAD-dependent deacylase -1.8  
Heptanoic acid ABZR87_RS12340 8-amino-7-oxononanoate synthase -1.5  
Heptanoic acid ABZR87_RS13215 ATP-binding protein -1.2  
Heptanoic acid ABZR87_RS18985 GGDEF and EAL domain-containing protein +1.4  
Heptanoic acid ABZR87_RS19025 MdtB/MuxB family multidrug efflux RND transporter permease subunit +1.2  
Heptanoic acid ABZR87_RS19430 alpha,alpha-trehalose-phosphate synthase (UDP-forming) -1.5  
Heptanoic acid ABZR87_RS19635 cation:proton antiporter +2.3  
Heptanoic acid ABZR87_RS19770 H-NS family nucleoid-associated regulatory protein -1.9  
L-Glutamic acid monopotassium salt monohydrate ABZR87_RS14155 propionate--CoA ligase +1.2  
Lauric acid ABZR87_RS00920 AI-2E family transporter variable  
Lauric acid ABZR87_RS00965 bifunctional anthranilate synthase component I family protein/class IV aminotransferase variable  
Lauric acid ABZR87_RS02115 murein transglycosylase A variable  
Lauric acid ABZR87_RS02165 CYTH domain-containing protein -2.0  
Lauric acid ABZR87_RS03520 ferritin-like domain-containing protein -1.1  
Lauric acid ABZR87_RS04885 lytic transglycosylase domain-containing protein variable  
Lauric acid ABZR87_RS04970 glycosyltransferase family 39 protein variable  
Lauric acid ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein -2.1  
Lauric acid ABZR87_RS08330 isocitrate lyase -1.3  
Lauric acid ABZR87_RS08765 TolC family outer membrane protein variable  
Lauric acid ABZR87_RS08775 protein-L-isoaspartate O-methyltransferase -2.6  
Lauric acid ABZR87_RS08780 TetR/AcrR family transcriptional regulator -1.8  
Lauric acid ABZR87_RS09560 D-amino acid dehydrogenase +1.6  
Lauric acid ABZR87_RS09565 Lrp/AsnC ligand binding domain-containing protein +1.6  
Lauric acid ABZR87_RS09720 Kdo hydroxylase family protein variable  
Lauric acid ABZR87_RS09945 recombinase -3.4  
Lauric acid ABZR87_RS10865 protein-L-isoaspartate(D-aspartate) O-methyltransferase -1.6  
Lauric acid ABZR87_RS11380 C40 family peptidase variable  
Lauric acid ABZR87_RS12840 TonB-dependent siderophore receptor -3.9  
Lauric acid ABZR87_RS12845 sigma-70 family RNA polymerase sigma factor variable  
Lauric acid ABZR87_RS13180 efflux RND transporter permease subunit -2.9  
Lauric acid ABZR87_RS13185 efflux RND transporter periplasmic adaptor subunit variable  
Lauric acid ABZR87_RS13420 D-alanyl-D-alanine endopeptidase variable  
Lauric acid ABZR87_RS13545 amino acid permease variable  
Lauric acid ABZR87_RS14255 lipid A hydroxylase LpxO variable  
Lauric acid ABZR87_RS18755 DUF1488 family protein -1.8  
Lauric acid ABZR87_RS23305 PepSY-associated TM helix domain-containing protein -4.8  
Lauric acid ABZR87_RS23430 LysR substrate-binding domain-containing protein -1.1  
Lauric acid ABZR87_RS23435 malonate decarboxylase subunit alpha -1.6  
Lauric acid ABZR87_RS23450 biotin-independent malonate decarboxylase subunit beta variable  
Lauric acid ABZR87_RS23455 biotin-independent malonate decarboxylase subunit gamma variable  
Lauric acid ABZR87_RS23460 malonate transporter subunit MadL variable  
Lauric acid ABZR87_RS23465 malonate transporter subunit MadM -1.4  
Lauric acid ABZR87_RS23475 malonate decarboxylase subunit epsilon variable  
Octanoic acid ABZR87_RS00010 translocation/assembly module TamB domain-containing protein +1.6  
Octanoic acid ABZR87_RS00015 autotransporter assembly complex family protein +1.3  
Octanoic acid ABZR87_RS00150 leucyl aminopeptidase -1.5  
Octanoic acid ABZR87_RS00505 LysR family transcriptional regulator -5.4  
Octanoic acid ABZR87_RS00510 MFS transporter -4.8  
Octanoic acid ABZR87_RS00920 AI-2E family transporter +2.6  
Octanoic acid ABZR87_RS00965 bifunctional anthranilate synthase component I family protein/class IV aminotransferase -3.9  
Octanoic acid ABZR87_RS01135 FAD-linked oxidase C-terminal domain-containing protein -1.5  
Octanoic acid ABZR87_RS01140 ion transporter -1.7 Yes
Octanoic acid ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase +2.2  
Octanoic acid ABZR87_RS01560 ribonuclease domain-containing protein -2.2  
Octanoic acid ABZR87_RS02165 CYTH domain-containing protein -3.0  
Octanoic acid ABZR87_RS02190 DsbC family protein +1.9  
Octanoic acid ABZR87_RS02365 ClpXP protease specificity-enhancing factor -3.6  
Octanoic acid ABZR87_RS03250 c-type cytochrome -1.5  
Octanoic acid ABZR87_RS03280 porin +1.2  
Octanoic acid ABZR87_RS03390 Lrp/AsnC family transcriptional regulator -1.6  
Octanoic acid ABZR87_RS03765 sulfur oxidation c-type cytochrome SoxA -1.2  
Octanoic acid ABZR87_RS04290 SET domain-containing protein-lysine N-methyltransferase -1.6  
Octanoic acid ABZR87_RS04380 ABC transporter permease subunit -1.7  
Octanoic acid ABZR87_RS04385 AAA-associated domain-containing protein -1.6  
Octanoic acid ABZR87_RS04970 glycosyltransferase family 39 protein +6.3  
Octanoic acid ABZR87_RS05105 zinc metallochaperone GTPase ZigA -2.8  
Octanoic acid ABZR87_RS05505 response regulator +1.6  
Octanoic acid ABZR87_RS07455 endonuclease/exonuclease/phosphatase family protein -2.0  
Octanoic acid ABZR87_RS07530 glutamate/aspartate ABC transporter permease GltK -2.0  
Octanoic acid ABZR87_RS07725 SprT family zinc-dependent metalloprotease -1.4  
Octanoic acid ABZR87_RS08775 protein-L-isoaspartate O-methyltransferase -4.0  
Octanoic acid ABZR87_RS08810 tRNA-Gly -2.7  
Octanoic acid ABZR87_RS09105 IclR family transcriptional regulator -1.6  
Octanoic acid ABZR87_RS09145 cyclopropane-fatty-acyl-phospholipid synthase family protein -1.7  
Octanoic acid ABZR87_RS09195 thioredoxin +1.7  
Octanoic acid ABZR87_RS09525 histone deacetylase family protein -2.1  
Octanoic acid ABZR87_RS09680 TerC family protein +1.7  
Octanoic acid ABZR87_RS09720 Kdo hydroxylase family protein -3.3  
Octanoic acid ABZR87_RS09805 MASE1 domain-containing protein -2.2  
Octanoic acid ABZR87_RS09870 VWA domain-containing protein -3.2  
Octanoic acid ABZR87_RS09880 MoxR family ATPase -3.0  
Octanoic acid ABZR87_RS09885 cytochrome c -2.6  
Octanoic acid ABZR87_RS10430 circularly permuted type 2 ATP-grasp protein -1.5  
Octanoic acid ABZR87_RS10570 peptidylprolyl isomerase -1.9  
Octanoic acid ABZR87_RS10995 NAD-dependent deacylase -2.4  
Octanoic acid ABZR87_RS11395 peroxiredoxin -2.6  
Octanoic acid ABZR87_RS11590 isocitrate lyase -2.4  
Octanoic acid ABZR87_RS12340 8-amino-7-oxononanoate synthase -3.0  
Octanoic acid ABZR87_RS12550 NADP-dependent oxidoreductase -2.0  
Octanoic acid ABZR87_RS13700 MerR family transcriptional regulator +1.5  
Octanoic acid ABZR87_RS14255 lipid A hydroxylase LpxO -3.1  
Octanoic acid ABZR87_RS15055 adenosine deaminase -1.7  
Octanoic acid ABZR87_RS15190 PHB depolymerase family esterase +1.2  
Octanoic acid ABZR87_RS17175 sensor histidine kinase -1.4  
Octanoic acid ABZR87_RS17210 glycogen debranching protein GlgX -2.1  
Octanoic acid ABZR87_RS17220 maltose alpha-D-glucosyltransferase +1.0  
Octanoic acid ABZR87_RS18760 hypothetical protein +2.1  
Octanoic acid ABZR87_RS18835 cytochrome d ubiquinol oxidase subunit II -1.9  
Octanoic acid ABZR87_RS18840 cytochrome ubiquinol oxidase subunit I -1.7  
Octanoic acid ABZR87_RS19015 efflux transporter outer membrane subunit +2.1  
Octanoic acid ABZR87_RS19025 MdtB/MuxB family multidrug efflux RND transporter permease subunit +2.4  
Octanoic acid ABZR87_RS19030 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit +2.4  
Octanoic acid ABZR87_RS19430 alpha,alpha-trehalose-phosphate synthase (UDP-forming) -2.0  
Octanoic acid ABZR87_RS19595 Gfo/Idh/MocA family oxidoreductase -1.4  
Octanoic acid ABZR87_RS19625 TonB-dependent siderophore receptor -1.4  
Octanoic acid ABZR87_RS19635 cation:proton antiporter +6.1  
Octanoic acid ABZR87_RS19770 H-NS family nucleoid-associated regulatory protein -3.6  
Octanoic acid ABZR87_RS20095 class II glutamine amidotransferase +1.4  
Octanoic acid ABZR87_RS21475 efflux RND transporter permease subunit +1.4  
Octanoic acid ABZR87_RS23535 RNA polymerase factor sigma-54 +2.7  
Pimelic acid ABZR87_RS02560 tripartite tricarboxylate transporter substrate binding protein +1.3  
Pimelic acid ABZR87_RS04195 branched-chain amino acid ABC transporter permease -3.6  
Pimelic acid ABZR87_RS04200 branched-chain amino acid ABC transporter permease -3.8  
Pimelic acid ABZR87_RS04205 ABC transporter substrate-binding protein -1.3  
Pimelic acid ABZR87_RS04210 ABC transporter ATP-binding protein -3.7  
Pimelic acid ABZR87_RS04215 ABC transporter ATP-binding protein -4.5  
Pimelic acid ABZR87_RS12600 ABC transporter ATP-binding protein -4.1 Yes
Pimelic acid ABZR87_RS12610 branched-chain amino acid ABC transporter permease -4.1 Yes
Pimelic acid ABZR87_RS12620 branched-chain amino acid ABC transporter substrate-binding protein -3.5 Yes
Pimelic acid ABZR87_RS12625 3-(methylthio)propionyl-CoA ligase -2.8 Yes
Pimelic acid ABZR87_RS17560 ABC transporter substrate-binding protein -3.9  
Pimelic acid ABZR87_RS21680 TetR/AcrR family transcriptional regulator +1.4  
Protocatechuic Acid ABZR87_RS00150 leucyl aminopeptidase variable  
Protocatechuic Acid ABZR87_RS05510 glutathione S-transferase -1.6  
Protocatechuic Acid ABZR87_RS12085 protocatechuate 3,4-dioxygenase subunit beta -6.1 Yes
Protocatechuic Acid ABZR87_RS15460 benzoylformate decarboxylase +7.4 Yes
Protocatechuic Acid ABZR87_RS15750 ABC transporter substrate-binding protein -2.9 Yes
Protocatechuic Acid ABZR87_RS15755 ABC transporter ATP-binding protein -2.4 Yes
Protocatechuic Acid ABZR87_RS15765 branched-chain amino acid ABC transporter permease -2.5 Yes
Protocatechuic Acid ABZR87_RS15770 branched-chain amino acid ABC transporter permease -2.7 Yes
Protocatechuic Acid ABZR87_RS15775 4-carboxymuconolactone decarboxylase -8.0  
Protocatechuic Acid ABZR87_RS15780 3-oxoadipate enol-lactonase -5.8 Yes
Protocatechuic Acid ABZR87_RS15785 3-carboxy-cis,cis-muconate cycloisomerase -7.2 Yes
Protocatechuic Acid ABZR87_RS19820 IclR family transcriptional regulator C-terminal domain-containing protein +2.6  
Sebacic acid ABZR87_RS00965 bifunctional anthranilate synthase component I family protein/class IV aminotransferase -3.9  
Sebacic acid ABZR87_RS04220 choline dehydrogenase -2.0  
Sebacic acid ABZR87_RS04385 AAA-associated domain-containing protein -2.5  
Sebacic acid ABZR87_RS06580 hypothetical protein -1.2  
Sebacic acid ABZR87_RS07115 Na/Pi cotransporter family protein +1.5  
Sebacic acid ABZR87_RS07390 ABC transporter ATP-binding protein/permease +1.2  
Sebacic acid ABZR87_RS08855 lytic transglycosylase domain-containing protein -2.1  
Sebacic acid ABZR87_RS09880 MoxR family ATPase -1.3  
Sebacic acid ABZR87_RS10995 NAD-dependent deacylase -1.8  
Sebacic acid ABZR87_RS12340 8-amino-7-oxononanoate synthase -2.5  
Sebacic acid ABZR87_RS15190 PHB depolymerase family esterase +1.9  
Sebacic acid ABZR87_RS15590 DUF2957 domain-containing protein +1.7  
Sebacic acid ABZR87_RS19660 aspartate aminotransferase family protein -2.3  
Sebacic acid ABZR87_RS22425 nitronate monooxygenase family protein -1.9  
Sodium acetate ABZR87_RS07595 anhydro-N-acetylmuramic acid kinase +1.3  
Sodium acetate ABZR87_RS07690 aminoglycoside phosphotransferase family protein +1.2  
Sodium acetate ABZR87_RS13745 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -1.4  
Sodium adipate ABZR87_RS16635 MFS family transporter -3.8 Yes
Sodium butyrate ABZR87_RS17455 AraC family transcriptional regulator -3.5 Yes
Sodium butyrate ABZR87_RS17465 AMP-binding protein -2.2 Yes
Sodium butyrate ABZR87_RS17470 CoA-acylating methylmalonate-semialdehyde dehydrogenase -2.2  
Sodium butyrate ABZR87_RS17475 3-hydroxyisobutyrate dehydrogenase -3.9 Yes
Sodium propionate ABZR87_RS07950 sodium/substrate symporter small subunit -1.2  
Sodium propionate ABZR87_RS14355 sodium:solute symporter family protein -1.2 Yes
Sodium succinate dibasic hexahydrate ABZR87_RS06625 dicarboxylate/amino acid:cation symporter -5.2 Yes
Sodium succinate dibasic hexahydrate ABZR87_RS06630 sensor histidine kinase -1.4 Yes
Sodium succinate dibasic hexahydrate ABZR87_RS06635 sigma-54 dependent transcriptional regulator -3.3 Yes
Suberic acid ABZR87_RS12610 branched-chain amino acid ABC transporter permease -2.5  
Suberic acid ABZR87_RS12620 branched-chain amino acid ABC transporter substrate-binding protein -1.5  
Trans-2-methyl-2-butenoic acid ABZR87_RS06305 acetyl-CoA C-acetyltransferase -6.3  
Trans-2-methyl-2-butenoic acid ABZR87_RS06320 isovaleryl-CoA dehydrogenase -3.0  
Trans-2-methyl-2-butenoic acid ABZR87_RS17455 AraC family transcriptional regulator -3.9  
Trans-2-methyl-2-butenoic acid ABZR87_RS17460 acyl-CoA dehydrogenase -2.7  
Trans-2-methyl-2-butenoic acid ABZR87_RS17465 AMP-binding protein -2.8  
Trans-2-methyl-2-butenoic acid ABZR87_RS17475 3-hydroxyisobutyrate dehydrogenase -1.7