Specific Phenotypes for Phocaeicola vulgatus CL09T03C04 in carbon source experiments

Condition Gene Description Fitness Cons.
(+)-Arabinogalactan HMPREF1058_RS07330 efflux RND transporter permease subunit -1.4  
(+)-Arabinogalactan HMPREF1058_RS07605 radical SAM protein +2.1  
(+)-Arabinogalactan HMPREF1058_RS08365 glycoside hydrolase family 127 protein +1.4  
(+)-Arabinogalactan HMPREF1058_RS08440 RagB/SusD family nutrient uptake outer membrane protein -1.8  
(+)-Arabinogalactan HMPREF1058_RS08445 TonB-dependent receptor -1.6  
(+)-Arabinogalactan HMPREF1058_RS08450 response regulator -2.0  
(+)-Arabinogalactan HMPREF1058_RS08895 right-handed parallel beta-helix repeat-containing protein +1.0 Yes
(+)-Arabinogalactan HMPREF1058_RS10540 glycoside hydrolase family 97 protein -1.8 Yes
(+)-Arabinogalactan HMPREF1058_RS18540 HEPN domain-containing protein +1.1  
2'-fucosyllactose HMPREF1058_RS11780 glycoside hydrolase N-terminal domain-containing protein -1.3  
2'-fucosyllactose HMPREF1058_RS12270 L-fucose:H+ symporter permease -1.1  
2'-fucosyllactose HMPREF1058_RS12275 L-fucose isomerase -1.3  
3'-fucosyllactose HMPREF1058_RS11450 hypothetical protein +1.3  
3'-fucosyllactose HMPREF1058_RS12275 L-fucose isomerase -1.5  
3'-fucosyllactose HMPREF1058_RS14950 helix-turn-helix domain-containing protein +1.1  
3'-fucosyllactose HMPREF1058_RS18775 S9 family peptidase +1.5  
3'-sialyllactose sodium salt HMPREF1058_RS07425 SusD family outer membrane lipoprotein NanU -1.7  
3'-sialyllactose sodium salt HMPREF1058_RS07430 TonB-dependent receptor -1.9  
3'-sialyllactose sodium salt HMPREF1058_RS08670 SusD family outer membrane lipoprotein NanU -2.1  
3'-sialyllactose sodium salt HMPREF1058_RS08675 TonB-dependent receptor -2.1  
6'-O-sialyllactose sodium salt HMPREF1058_RS07425 SusD family outer membrane lipoprotein NanU -1.4  
6'-O-sialyllactose sodium salt HMPREF1058_RS07430 TonB-dependent receptor -1.3  
6'-O-sialyllactose sodium salt HMPREF1058_RS08670 SusD family outer membrane lipoprotein NanU -2.2  
6'-O-sialyllactose sodium salt HMPREF1058_RS08675 TonB-dependent receptor -2.2  
Amylose from potato HMPREF1058_RS12300 SusE domain-containing protein +4.6  
Arabinan from Sugar Beet HMPREF1058_RS02180 efflux RND transporter periplasmic adaptor subunit -1.6  
Arabinan from Sugar Beet HMPREF1058_RS08395 carbohydrate binding domain-containing protein -1.1  
Arabinan from Sugar Beet HMPREF1058_RS08430 RagB/SusD family nutrient uptake outer membrane protein -1.4  
Arabinan from Sugar Beet HMPREF1058_RS08435 TonB-dependent receptor -1.6  
Arabinan from Sugar Beet HMPREF1058_RS08440 RagB/SusD family nutrient uptake outer membrane protein -1.2  
Arabinan from Sugar Beet HMPREF1058_RS08445 TonB-dependent receptor -1.0  
Arabinan from Sugar Beet HMPREF1058_RS08450 response regulator -2.0  
Arabinan from Sugar Beet HMPREF1058_RS10390 hypothetical protein -1.2  
Arabinan from Sugar Beet HMPREF1058_RS10535 response regulator -2.6  
Arabinan from Sugar Beet HMPREF1058_RS10545 TonB-dependent receptor -1.7  
Arabinan from Sugar Beet HMPREF1058_RS10550 RagB/SusD family nutrient uptake outer membrane protein -2.0  
Arabinan from Sugar Beet HMPREF1058_RS10555 bacterial Ig-like domain-containing protein -1.8  
Arabinan from Sugar Beet HMPREF1058_RS10560 arabinan endo-1,5-alpha-L-arabinosidase -3.4  
Arabinan from Sugar Beet HMPREF1058_RS10895 LTA synthase family protein -1.4  
Arabinan from Sugar Beet HMPREF1058_RS15060 outer membrane beta-barrel protein +1.6  
Arabinoxylan (Rye Flour) HMPREF1058_RS03605 glycosyltransferase family 2 protein +1.4  
Arabinoxylan (Rye Flour) HMPREF1058_RS06500 acyltransferase +2.2  
Arabinoxylan (Rye Flour) HMPREF1058_RS16180 YjbH domain-containing protein +1.8  
Arabinoxylan (Rye Flour) HMPREF1058_RS16185 undecaprenyl-phosphate glucose phosphotransferase +2.2  
Arabinoxylan (Rye Flour) HMPREF1058_RS18055 TolC family protein -1.6  
Arabinoxylan (Rye Flour) HMPREF1058_RS18295 response regulator variable  
Beta-Lactose HMPREF1058_RS02385 FecR family protein +2.0  
Beta-Lactose HMPREF1058_RS07425 SusD family outer membrane lipoprotein NanU +1.5  
Beta-Lactose HMPREF1058_RS08930 DUF4981 domain-containing protein -2.0 Yes
Beta-Lactose HMPREF1058_RS11450 hypothetical protein variable  
Beta-Lactose HMPREF1058_RS11470 porin family protein +1.5  
Beta-Lactose HMPREF1058_RS14470 hypothetical protein -2.0  
Beta-Lactose HMPREF1058_RS14840 aminopeptidase variable  
Beta-Lactose HMPREF1058_RS14945 hypothetical protein +1.1  
Beta-Lactose HMPREF1058_RS17350 hypothetical protein variable  
Beta-Lactose HMPREF1058_RS18775 S9 family peptidase +2.5  
Bimuno HMPREF1058_RS11190 rubrerythrin family protein +1.3  
Bioecolians HMPREF1058_RS06315 hypothetical protein -1.5  
D-Arabinose HMPREF1058_RS12270 L-fucose:H+ symporter permease -5.5 Yes
D-Arabinose HMPREF1058_RS12275 L-fucose isomerase -6.4 Yes
D-Arabinose HMPREF1058_RS12280 GntR family transcriptional regulator -1.7  
D-Arabinose HMPREF1058_RS12905 kinase +5.2  
D-Arabinose HMPREF1058_RS14050 peptidoglycan DD-metalloendopeptidase family protein variable  
D-Arabinose HMPREF1058_RS15325 BACON domain-containing protein +1.1  
D-Arabinose HMPREF1058_RS18645 glycosyl transferase +1.1  
D-Arabinose HMPREF1058_RS18775 S9 family peptidase variable  
D-Galactose HMPREF1058_RS00470 redox-sensing transcriptional repressor Rex variable  
D-Galactose HMPREF1058_RS01230 redoxin domain-containing protein -3.6  
D-Galactose HMPREF1058_RS01250 DUF4738 domain-containing protein -1.4  
D-Galactose HMPREF1058_RS02930 OmpA family protein -2.9  
D-Galactose HMPREF1058_RS04660 response regulator -1.5  
D-Galactose HMPREF1058_RS06315 hypothetical protein -1.9  
D-Galactose HMPREF1058_RS07370 N-acetylglucosamine-6-phosphate deacetylase +1.4  
D-Galactose HMPREF1058_RS12800 TonB-dependent receptor -1.7  
D-Galactose HMPREF1058_RS12815 sodium-dependent transporter +2.2  
D-Galactose HMPREF1058_RS13880 MATE family efflux transporter -1.4  
D-Galactose HMPREF1058_RS13940 hypothetical protein +1.4  
D-Galactose HMPREF1058_RS14300 rRNA cytosine-C5-methyltransferase variable  
D-Galactose HMPREF1058_RS15010 dicarboxylate/amino acid:cation symporter +1.6  
D-Galactose HMPREF1058_RS15585 transporter substrate-binding domain-containing protein -3.1  
D-Galactose HMPREF1058_RS15690 ATP-binding cassette domain-containing protein +1.7  
D-Galactose HMPREF1058_RS15850 transglycosylase SLT domain-containing protein -3.6  
D-Galactose HMPREF1058_RS16370 porin variable  
D-Galactose HMPREF1058_RS17625 TonB-dependent receptor -2.2  
D-Galactose HMPREF1058_RS17630 DUF4625 domain-containing protein -2.4  
D-Galactose HMPREF1058_RS18020 dicarboxylate/amino acid:cation symporter +1.3  
D-Galactose HMPREF1058_RS18030 glucose-6-phosphate dehydrogenase +1.5  
D-Galactose HMPREF1058_RS18800 copper-translocating P-type ATPase variable Yes
D-Galacturonic Acid monohydrate HMPREF1058_RS06690 glycosyltransferase family 2 protein +1.6  
D-Galacturonic Acid monohydrate HMPREF1058_RS06695 glycosyltransferase +1.3  
D-Galacturonic Acid monohydrate HMPREF1058_RS06730 ABC transporter ATP-binding protein -1.6  
D-Galacturonic Acid monohydrate HMPREF1058_RS10895 LTA synthase family protein +1.2  
D-Galacturonic Acid monohydrate HMPREF1058_RS11190 rubrerythrin family protein variable  
D-Galacturonic Acid monohydrate HMPREF1058_RS11450 hypothetical protein +1.3  
D-Galacturonic Acid monohydrate HMPREF1058_RS11740 signal peptidase I +1.4  
D-Galacturonic Acid monohydrate HMPREF1058_RS18215 serine protease +1.1  
D-Glucosamine Hydrochloride HMPREF1058_RS15050 DUF5009 domain-containing protein -1.6 Yes
D-Glucose HMPREF1058_RS04690 cation:proton antiporter variable  
D-Glucose HMPREF1058_RS12815 sodium-dependent transporter +2.4  
D-Glucose HMPREF1058_RS13000 hypothetical protein +1.4  
D-Glucose HMPREF1058_RS13345 TrkH family potassium uptake protein variable  
D-Glucose HMPREF1058_RS14335 citrate/2-methylcitrate synthase variable  
D-Glucose HMPREF1058_RS14470 hypothetical protein variable  
D-Glucose HMPREF1058_RS14995 AhpC/TSA family protein variable  
D-Glucose HMPREF1058_RS16275 FAD-dependent oxidoreductase +1.7  
D-Glucose HMPREF1058_RS17625 TonB-dependent receptor variable  
D-Glucose HMPREF1058_RS17630 DUF4625 domain-containing protein variable  
D-Glucose HMPREF1058_RS18020 dicarboxylate/amino acid:cation symporter +1.7  
D-Glucose HMPREF1058_RS18030 glucose-6-phosphate dehydrogenase variable  
D-Glucose HMPREF1058_RS18035 6-phosphogluconolactonase variable  
D-Glucose HMPREF1058_RS18270 fructose-bisphosphatase class III variable Yes
D-Glucose HMPREF1058_RS18555 sodium:solute symporter variable  
D-Glucose HMPREF1058_RS19000 type II toxin-antitoxin system RelE/ParE family toxin variable  
D-Glucuronic Acid HMPREF1058_RS11750 SDR family oxidoreductase -5.4  
D-Glucuronic Acid HMPREF1058_RS11755 mannonate dehydratase -4.4 Yes
D-Maltose monohydrate HMPREF1058_RS04610 ATP-binding protein -1.9  
D-Mannose HMPREF1058_RS01785 patatin-like phospholipase family protein variable  
D-Mannose HMPREF1058_RS02930 OmpA family protein variable  
D-Mannose HMPREF1058_RS04690 cation:proton antiporter variable Yes
D-Mannose HMPREF1058_RS05860 insulinase family protein variable  
D-Mannose HMPREF1058_RS06295 aspartate ammonia-lyase variable  
D-Mannose HMPREF1058_RS12075 hypothetical protein -1.5  
D-Mannose HMPREF1058_RS12570 HIT family protein -1.4  
D-Mannose HMPREF1058_RS12815 sodium-dependent transporter +1.6  
D-Mannose HMPREF1058_RS14050 peptidoglycan DD-metalloendopeptidase family protein +1.4  
D-Mannose HMPREF1058_RS14335 citrate/2-methylcitrate synthase -2.3  
D-Mannose HMPREF1058_RS14470 hypothetical protein variable  
D-Mannose HMPREF1058_RS15010 dicarboxylate/amino acid:cation symporter +1.7  
D-Mannose HMPREF1058_RS16275 FAD-dependent oxidoreductase +1.4  
D-Mannose HMPREF1058_RS16370 porin variable  
D-Mannose HMPREF1058_RS17625 TonB-dependent receptor -1.7  
D-Mannose HMPREF1058_RS18020 dicarboxylate/amino acid:cation symporter +1.5  
D-Mannose HMPREF1058_RS18035 6-phosphogluconolactonase -3.8  
D-Mannose HMPREF1058_RS18120 formate C-acetyltransferase variable  
D-Mannose HMPREF1058_RS18270 fructose-bisphosphatase class III variable Yes
D-Mannose HMPREF1058_RS18555 sodium:solute symporter variable  
D-Xylose HMPREF1058_RS02385 FecR family protein variable  
D-Xylose HMPREF1058_RS04675 amidophosphoribosyltransferase variable  
D-Xylose HMPREF1058_RS06660 NUDIX hydrolase -3.1 Yes
D-Xylose HMPREF1058_RS06715 glycosyltransferase variable  
D-Xylose HMPREF1058_RS06720 glycosyltransferase variable  
D-Xylose HMPREF1058_RS06725 glycosyl transferase variable  
D-Xylose HMPREF1058_RS06730 ABC transporter ATP-binding protein variable  
D-Xylose HMPREF1058_RS06735 ABC transporter permease variable  
D-Xylose HMPREF1058_RS07100 D-xylose transporter XylE -4.0 Yes
D-Xylose HMPREF1058_RS13025 hypothetical protein variable  
D-Xylose HMPREF1058_RS14300 rRNA cytosine-C5-methyltransferase variable  
D-Xylose HMPREF1058_RS15325 BACON domain-containing protein +1.8  
D-Xylose HMPREF1058_RS18775 S9 family peptidase +1.9  
Dextrin from potato starch HMPREF1058_RS02180 efflux RND transporter periplasmic adaptor subunit variable  
Dextrin from potato starch HMPREF1058_RS02570 carbonic anhydrase -1.2  
Dextrin from potato starch HMPREF1058_RS05945 DUF4836 family protein variable  
Dextrin from potato starch HMPREF1058_RS05950 ATP-binding cassette domain-containing protein +1.8  
Dextrin from potato starch HMPREF1058_RS05955 hypothetical protein +1.8  
Dextrin from potato starch HMPREF1058_RS07325 efflux RND transporter periplasmic adaptor subunit -1.3  
Dextrin from potato starch HMPREF1058_RS07370 N-acetylglucosamine-6-phosphate deacetylase variable  
Dextrin from potato starch HMPREF1058_RS09715 hypothetical protein +1.4  
FSL HMPREF1058_RS07425 SusD family outer membrane lipoprotein NanU -1.5  
FSL HMPREF1058_RS08560 alpha-L-fucosidase -2.6  
FSL HMPREF1058_RS08670 SusD family outer membrane lipoprotein NanU -1.7  
FSL HMPREF1058_RS08675 TonB-dependent receptor -1.8  
Fructooligosaccharides from chicory HMPREF1058_RS05945 DUF4836 family protein +1.4  
Fructooligosaccharides from chicory HMPREF1058_RS05950 ATP-binding cassette domain-containing protein +1.6  
Fructooligosaccharides from chicory HMPREF1058_RS11450 hypothetical protein +1.0  
Fructooligosaccharides from chicory HMPREF1058_RS12090 tetratricopeptide repeat protein +1.7  
Fructooligosaccharides from chicory HMPREF1058_RS12095 TonB-dependent receptor +1.9  
Fructooligosaccharides from chicory HMPREF1058_RS18775 S9 family peptidase +2.8  
Galactan from Potato HMPREF1058_RS00045 SusC/RagA family TonB-linked outer membrane protein -1.1 Yes
Galactan from Potato HMPREF1058_RS02820 TonB-dependent receptor -1.0  
Galactan from Potato HMPREF1058_RS02825 RagB/SusD family nutrient uptake outer membrane protein -1.2  
Galactan from Potato HMPREF1058_RS04675 amidophosphoribosyltransferase +1.7  
Galactan from Potato HMPREF1058_RS14300 rRNA cytosine-C5-methyltransferase +2.0  
Galactan from Potato HMPREF1058_RS15060 outer membrane beta-barrel protein +2.2  
Galactan from Potato HMPREF1058_RS16630 DMP19 family protein +1.4  
Galactose 1-phosphate dipotassium salt pentahydrate HMPREF1058_RS06725 glycosyl transferase +1.5  
Galactose 1-phosphate dipotassium salt pentahydrate HMPREF1058_RS08570 family 20 glycosylhydrolase +1.5  
Galactose 1-phosphate dipotassium salt pentahydrate HMPREF1058_RS09715 hypothetical protein +1.7  
Galactose 1-phosphate dipotassium salt pentahydrate HMPREF1058_RS09720 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme +3.3  
Galactose 1-phosphate dipotassium salt pentahydrate HMPREF1058_RS09725 NAD/NADP octopine/nopaline dehydrogenase family protein +3.0  
Galactose 1-phosphate dipotassium salt pentahydrate HMPREF1058_RS09740 glycosyltransferase family 4 protein +2.3  
Galactose 1-phosphate dipotassium salt pentahydrate HMPREF1058_RS12825 alkaline phosphatase -5.2  
Galactose 1-phosphate dipotassium salt pentahydrate HMPREF1058_RS14595 dihydrofolate reductase +1.5  
Galactose 1-phosphate dipotassium salt pentahydrate HMPREF1058_RS17065 sugar MFS transporter +1.2  
ISOT LC742-071714 HMPREF1058_RS06490 YjbH domain-containing protein +1.4  
ISOT LC742-071714 HMPREF1058_RS11450 hypothetical protein +1.4  
L-Fucose HMPREF1058_RS08865 L-rhamnose isomerase -3.5  
L-Fucose HMPREF1058_RS08870 L-rhamnose/proton symporter RhaT -3.0  
L-Fucose HMPREF1058_RS08915 AraC family transcriptional regulator -3.4 Yes
L-Fucose HMPREF1058_RS12270 L-fucose:H+ symporter permease -5.4 Yes
L-Fucose HMPREF1058_RS12275 L-fucose isomerase -6.1 Yes
L-Fucose HMPREF1058_RS12280 GntR family transcriptional regulator -2.2  
L-Rhamnose monohydrate HMPREF1058_RS08865 L-rhamnose isomerase -6.4 Yes
L-Rhamnose monohydrate HMPREF1058_RS08870 L-rhamnose/proton symporter RhaT -6.6 Yes
L-Rhamnose monohydrate HMPREF1058_RS08915 AraC family transcriptional regulator -6.1 Yes
L-Rhamnose monohydrate HMPREF1058_RS18775 S9 family peptidase +1.7  
Mannan from Saccharomyces cerevisiae HMPREF1058_RS02415 RagB/SusD family nutrient uptake outer membrane protein -1.4  
Mannan from Saccharomyces cerevisiae HMPREF1058_RS02420 TonB-dependent receptor -1.0  
Mannan from Saccharomyces cerevisiae HMPREF1058_RS06250 AMP-binding protein -1.7  
Mannan from Saccharomyces cerevisiae HMPREF1058_RS06295 aspartate ammonia-lyase -1.5  
Mannan from Saccharomyces cerevisiae HMPREF1058_RS11190 rubrerythrin family protein +1.7  
N-Acetyl-D-Glucosamine HMPREF1058_RS02995 peptidylprolyl isomerase variable  
N-Acetyl-D-Glucosamine HMPREF1058_RS06045 large-conductance mechanosensitive channel protein MscL variable  
N-Acetyl-D-Glucosamine HMPREF1058_RS08690 hypothetical protein variable  
N-Acetyl-D-Glucosamine HMPREF1058_RS08695 RagB/SusD family nutrient uptake outer membrane protein variable  
N-Acetyl-D-Glucosamine HMPREF1058_RS12815 sodium-dependent transporter +2.4  
N-Acetyl-D-Glucosamine HMPREF1058_RS15010 dicarboxylate/amino acid:cation symporter variable  
N-Acetyl-D-Glucosamine HMPREF1058_RS17625 TonB-dependent receptor variable  
N-Acetyl-D-Glucosamine HMPREF1058_RS17630 DUF4625 domain-containing protein -1.7  
N-Acetyl-D-Glucosamine HMPREF1058_RS18020 dicarboxylate/amino acid:cation symporter variable  
Pectic galactan from potato HMPREF1058_RS00310 zinc-binding alcohol dehydrogenase family protein -1.2  
Pectic galactan from potato HMPREF1058_RS03600 oligosaccharide repeat unit polymerase +2.0  
Pectic galactan from potato HMPREF1058_RS03605 glycosyltransferase family 2 protein +3.0  
Pectic galactan from potato HMPREF1058_RS03610 glycosyltransferase family 4 protein +2.7  
Pectic galactan from potato HMPREF1058_RS03620 glycosyltransferase +2.2  
Pectic galactan from potato HMPREF1058_RS03625 polysaccharide pyruvyl transferase family protein +2.9  
Pectic galactan from potato HMPREF1058_RS06500 acyltransferase +2.4  
Pectic galactan from potato HMPREF1058_RS07325 efflux RND transporter periplasmic adaptor subunit -1.5  
Pectic galactan from potato HMPREF1058_RS07330 efflux RND transporter permease subunit -1.3  
Pectic galactan from potato HMPREF1058_RS07335 TolC family protein -1.5  
Pectic galactan from potato HMPREF1058_RS16150 glycosyltransferase +2.3  
Pectic galactan from potato HMPREF1058_RS16185 undecaprenyl-phosphate glucose phosphotransferase +2.6  
Pectic galactan from potato HMPREF1058_RS17500 beta-glycosidase +1.1  
Pectic galactan from potato HMPREF1058_RS17730 hypothetical protein -1.1  
Pectic galactan from potato HMPREF1058_RS18295 response regulator -1.3  
Pectic galactan from potato HMPREF1058_RS18310 RagB/SusD family nutrient uptake outer membrane protein -1.3  
Pectic galactan from potato HMPREF1058_RS18335 sigma-70 family RNA polymerase sigma factor -2.7 Yes
Pectin from apple HMPREF1058_RS14455 DUF4861 domain-containing protein +1.9  
Polygalacturonic acid sodium salt HMPREF1058_RS05950 ATP-binding cassette domain-containing protein +1.9  
Polygalacturonic acid sodium salt HMPREF1058_RS07975 family 10 glycosylhydrolase +1.4  
PreticX HMPREF1058_RS03790 OmpA family protein -1.6  
PreticX HMPREF1058_RS11265 glycoside hydrolase family 3 C-terminal domain-containing protein -1.3  
Promitor HMPREF1058_RS00470 redox-sensing transcriptional repressor Rex +1.5  
Promitor HMPREF1058_RS14950 helix-turn-helix domain-containing protein +1.4  
Promitor HMPREF1058_RS14995 AhpC/TSA family protein +1.4  
Promitor HMPREF1058_RS15060 outer membrane beta-barrel protein +1.7  
Red Arabinan from sugar-beet HMPREF1058_RS00040 RagB/SusD family nutrient uptake outer membrane protein -1.1  
Red Arabinan from sugar-beet HMPREF1058_RS02815 FecR family protein +1.3  
Red Arabinan from sugar-beet HMPREF1058_RS03300 superoxide dismutase +1.4  
Red Arabinan from sugar-beet HMPREF1058_RS06295 aspartate ammonia-lyase variable  
Red Arabinan from sugar-beet HMPREF1058_RS08450 response regulator -1.4  
Red Arabinan from sugar-beet HMPREF1058_RS10535 response regulator -2.4 Yes
Red Arabinan from sugar-beet HMPREF1058_RS10545 TonB-dependent receptor -2.0  
Red Arabinan from sugar-beet HMPREF1058_RS10550 RagB/SusD family nutrient uptake outer membrane protein -2.1  
Red Arabinan from sugar-beet HMPREF1058_RS10555 bacterial Ig-like domain-containing protein -1.7  
Red Arabinan from sugar-beet HMPREF1058_RS10560 arabinan endo-1,5-alpha-L-arabinosidase -3.2  
Rhamnogalacturonan I from potato pectic fiber HMPREF1058_RS13545 RagB/SusD family nutrient uptake outer membrane protein -1.8  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1058_RS00050 RagB/SusD family nutrient uptake outer membrane protein -1.3  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1058_RS00310 zinc-binding alcohol dehydrogenase family protein -1.5 Yes
Rhamnogalacturonan from soy bean pectic fibre HMPREF1058_RS07320 AraC family transcriptional regulator variable  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1058_RS07325 efflux RND transporter periplasmic adaptor subunit variable  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1058_RS07330 efflux RND transporter permease subunit variable  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1058_RS07335 TolC family protein variable  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1058_RS17465 beta-galactosidase variable  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1058_RS17730 hypothetical protein variable  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1058_RS18295 response regulator variable  
Rhamnogalacturonan from soy bean pectic fibre HMPREF1058_RS18465 glycosyltransferase family 4 protein +1.4  
Sialyllacto-N-tetraose a HMPREF1058_RS08670 SusD family outer membrane lipoprotein NanU -2.2  
Sialyllacto-N-tetraose a HMPREF1058_RS08675 TonB-dependent receptor -2.2  
Sialyllacto-N-tetraose a HMPREF1058_RS10505 DUF4981 domain-containing protein -3.9  
Sialyllacto-N-tetraose a HMPREF1058_RS12815 sodium-dependent transporter +1.5  
Sialyllacto-N-tetraose a HMPREF1058_RS15060 outer membrane beta-barrel protein +1.6  
Sialyllacto-N-tetraose c HMPREF1058_RS07425 SusD family outer membrane lipoprotein NanU -1.3  
Sialyllacto-N-tetraose c HMPREF1058_RS07430 TonB-dependent receptor -1.4  
Sialyllacto-N-tetraose c HMPREF1058_RS08670 SusD family outer membrane lipoprotein NanU -1.6  
Sialyllacto-N-tetraose c HMPREF1058_RS08675 TonB-dependent receptor -1.4  
Sialyllacto-N-tetraose c HMPREF1058_RS12815 sodium-dependent transporter +2.9  
Sialyllacto-N-tetraose c HMPREF1058_RS15060 outer membrane beta-barrel protein +1.6  
Sialyllacto-N-tetraose d HMPREF1058_RS07425 SusD family outer membrane lipoprotein NanU -1.4  
Sialyllacto-N-tetraose d HMPREF1058_RS07430 TonB-dependent receptor -1.4  
Sucrose HMPREF1058_RS02185 ABC transporter permease -1.2  
Sucrose HMPREF1058_RS02930 OmpA family protein -2.9  
Sucrose HMPREF1058_RS03760 UDP-N-acetyl glucosamine 2-epimerase variable  
Sucrose HMPREF1058_RS04690 cation:proton antiporter variable  
Sucrose HMPREF1058_RS05860 insulinase family protein variable  
Sucrose HMPREF1058_RS06045 large-conductance mechanosensitive channel protein MscL -1.4  
Sucrose HMPREF1058_RS12800 TonB-dependent receptor variable  
Sucrose HMPREF1058_RS13880 MATE family efflux transporter -1.4  
Sucrose HMPREF1058_RS14335 citrate/2-methylcitrate synthase -2.1  
Sucrose HMPREF1058_RS14470 hypothetical protein variable  
Sucrose HMPREF1058_RS15065 MATE family efflux transporter -1.4  
Sucrose HMPREF1058_RS15585 transporter substrate-binding domain-containing protein -1.7  
Sucrose HMPREF1058_RS17145 5-formyltetrahydrofolate cyclo-ligase -1.4  
Sucrose HMPREF1058_RS18000 nitronate monooxygenase variable  
Sucrose HMPREF1058_RS18035 6-phosphogluconolactonase -3.0  
Sucrose HMPREF1058_RS18800 copper-translocating P-type ATPase -1.7  
Sunfiber HMPREF1058_RS18140 hypothetical protein -1.0  
Tara gum HMPREF1058_RS05910 galactose mutarotase -1.5  
Tara gum HMPREF1058_RS18140 hypothetical protein -1.7  
Vitafiber HMPREF1058_RS04220 class I SAM-dependent methyltransferase +1.2  
Vitagos 5650 HMPREF1058_RS02570 carbonic anhydrase -1.4  
Vitagos 5650 HMPREF1058_RS17625 TonB-dependent receptor -1.5  
Wako Isomaltooligosaccharides HMPREF1058_RS02570 carbonic anhydrase -1.1  
Xylan from corn core HMPREF1058_RS07100 D-xylose transporter XylE -1.4  
a-Cyclodextrin HMPREF1058_RS09200 hypothetical protein +1.2  
a-Cyclodextrin HMPREF1058_RS14470 hypothetical protein -1.7  
a-Cyclodextrin HMPREF1058_RS15925 aminoacyl-histidine dipeptidase variable  
amylopectin from maize HMPREF1058_RS12300 SusE domain-containing protein +3.9  
beta-Cyclodextrin HMPREF1058_RS02570 carbonic anhydrase -2.0  
beta-Cyclodextrin HMPREF1058_RS03605 glycosyltransferase family 2 protein -1.7  
beta-Cyclodextrin HMPREF1058_RS05030 M23 family metallopeptidase -1.9  
beta-Cyclodextrin HMPREF1058_RS05950 ATP-binding cassette domain-containing protein +1.5  
beta-Cyclodextrin HMPREF1058_RS09370 DUF3467 domain-containing protein +1.8  
beta-Cyclodextrin HMPREF1058_RS09715 hypothetical protein +1.4  
beta-Cyclodextrin HMPREF1058_RS14050 peptidoglycan DD-metalloendopeptidase family protein +1.4  
beta-Cyclodextrin HMPREF1058_RS14300 rRNA cytosine-C5-methyltransferase +1.6  
beta-Cyclodextrin HMPREF1058_RS14470 hypothetical protein -2.0  
beta-Cyclodextrin HMPREF1058_RS15060 outer membrane beta-barrel protein +1.5  
beta-Cyclodextrin HMPREF1058_RS16720 nitroreductase family protein +1.4  
beta-Cyclodextrin HMPREF1058_RS17065 sugar MFS transporter +1.2  
beta-Cyclodextrin HMPREF1058_RS21680 ATP-binding cassette domain-containing protein -1.7  
dextran HMPREF1058_RS08990 GH92 family glycosyl hydrolase -1.1  
polygalacturonic acid HMPREF1058_RS01225 HAD family phosphatase +2.2  
polygalacturonic acid HMPREF1058_RS01920 hypothetical protein variable  
polygalacturonic acid HMPREF1058_RS06710 DUF4422 domain-containing protein variable  
polygalacturonic acid HMPREF1058_RS06715 glycosyltransferase variable  
polygalacturonic acid HMPREF1058_RS06720 glycosyltransferase variable  
polygalacturonic acid HMPREF1058_RS06725 glycosyl transferase variable  
polygalacturonic acid HMPREF1058_RS06730 ABC transporter ATP-binding protein variable  
polygalacturonic acid HMPREF1058_RS06735 ABC transporter permease variable  
polygalacturonic acid HMPREF1058_RS06740 glycosyltransferase variable  
polygalacturonic acid HMPREF1058_RS06765 glycosyltransferase family 1 protein variable  
polygalacturonic acid HMPREF1058_RS07095 PD40 domain-containing protein +1.4  
polygalacturonic acid HMPREF1058_RS07320 AraC family transcriptional regulator -2.0  
polygalacturonic acid HMPREF1058_RS07325 efflux RND transporter periplasmic adaptor subunit variable  
polygalacturonic acid HMPREF1058_RS07330 efflux RND transporter permease subunit variable  
polygalacturonic acid HMPREF1058_RS07335 TolC family protein variable  
polygalacturonic acid HMPREF1058_RS09170 DUF4252 domain-containing protein variable  
polygalacturonic acid HMPREF1058_RS09175 RNA polymerase sigma factor variable  
polygalacturonic acid HMPREF1058_RS09740 glycosyltransferase family 4 protein +1.5  
polygalacturonic acid HMPREF1058_RS10805 FecR family protein +2.2  
polygalacturonic acid HMPREF1058_RS11410 PD40 domain-containing protein +1.3  
polygalacturonic acid HMPREF1058_RS11565 murein L,D-transpeptidase catalytic domain family protein variable  
polygalacturonic acid HMPREF1058_RS11830 hypothetical protein +1.9  
polygalacturonic acid HMPREF1058_RS13065 hypothetical protein variable  
polygalacturonic acid HMPREF1058_RS13545 RagB/SusD family nutrient uptake outer membrane protein -3.0  
polygalacturonic acid HMPREF1058_RS14300 rRNA cytosine-C5-methyltransferase +2.6  
polygalacturonic acid HMPREF1058_RS15385 metallophosphoesterase variable  
polygalacturonic acid HMPREF1058_RS15510 xanthan lyase variable  
polygalacturonic acid HMPREF1058_RS17300 putative colanic acid biosynthesis acetyltransferase variable  
polygalacturonic acid HMPREF1058_RS17625 TonB-dependent receptor -2.2 Yes
polygalacturonic acid HMPREF1058_RS17630 DUF4625 domain-containing protein variable Yes
polygalacturonic acid HMPREF1058_RS17655 AbgT family transporter +3.8  
polygalacturonic acid HMPREF1058_RS17785 hypothetical protein variable  
polygalacturonic acid HMPREF1058_RS18775 S9 family peptidase +2.5