Specific Phenotypes for Bifidobacterium breve UCC2003 in carbon source experiments

Condition Gene Description Fitness Cons.
3'-fucosyllactose BBR_RS18470 MFS transporter -1.9  
Actilight BBR_RS10860 4-alpha-glucanotransferase -1.5  
Beta-Lactose BBR_RS18470 MFS transporter -1.7  
D-Cellobiose BBR_RS10810 hypothetical protein -3.3  
D-Cellobiose BBR_RS10815 sugar ABC transporter permease -3.3  
D-Cellobiose BBR_RS10820 carbohydrate ABC transporter permease -3.6  
D-Cellobiose BBR_RS10825 beta-glucosidase -6.1 Yes
D-Galactose BBR_RS11200 LacI family transcriptional regulator +1.1  
D-Galactose BBR_RS11735 LacI family transcriptional regulator +6.2  
D-Galactose BBR_RS15185 NAD(P) transhydrogenase subunit alpha +5.0  
D-Galactose BBR_RS15190 NAD(P) transhydrogenase subunit alpha +5.0  
D-Galactose BBR_RS15195 NAD(P) transhydrogenase subunit beta +5.0  
D-Galactose BBR_RS18480 LacI family DNA-binding transcriptional regulator +9.8  
D-Galactose BBR_RS19505 LacI family transcriptional regulator -1.1  
D-Galactose BBR_RS20640 hypothetical protein +1.0  
D-Ribose BBR_RS17750 ribokinase -3.3 Yes
D-Ribose BBR_RS17755 D-ribose pyranase -3.0 Yes
D-Ribose BBR_RS17760 D-ribose ABC transporter substrate-binding protein -2.9  
D-Ribose BBR_RS17770 sugar ABC transporter ATP-binding protein -2.5 Yes
D-Trehalose dihydrate BBR_RS10430 LacI family transcriptional regulator +2.4  
Difucosyllactose BBR_RS10825 beta-glucosidase -1.4  
Difucosyllactose BBR_RS13175 deoxyguanosinetriphosphate triphosphohydrolase -2.1  
Difucosyllactose BBR_RS14505 hypothetical protein +2.1  
Fibersol-2-AG-fiber BBR_RS10815 sugar ABC transporter permease +1.3  
Fibersol-2-AG-fiber BBR_RS10820 carbohydrate ABC transporter permease +1.0  
ISOThrive-prebiotic lot A BBR_RS18130 glucokinase -1.4  
Inulin from chicory BBR_RS10365 LacI family DNA-binding transcriptional regulator -2.2  
Inulin from chicory BBR_RS10400 carbohydrate ABC transporter permease -2.0  
Inulin from chicory BBR_RS10405 sugar ABC transporter permease -1.7  
Inulin from chicory BBR_RS10430 LacI family transcriptional regulator +1.1  
Inulin from chicory BBR_RS10825 beta-glucosidase -1.7  
Inulin from chicory BBR_RS11160 FadR family transcriptional regulator -2.0  
Inulin from chicory BBR_RS12140 LacI family transcriptional regulator -1.5  
Inulin from chicory BBR_RS12515 LacI family transcriptional regulator -1.6  
Inulin from chicory BBR_RS14440 Cof-type HAD-IIB family hydrolase -1.7  
L-Fucose BBR_RS10430 LacI family transcriptional regulator +2.5  
L-Fucose BBR_RS19480 dihydrodipicolinate synthase family protein -1.9  
L-Fucose BBR_RS19485 amidohydrolase -1.7 Yes
L-Fucose BBR_RS19490 MFS transporter -1.8 Yes
L-Fucose BBR_RS19495 KR domain-containing protein -2.2  
L-Fucose BBR_RS19500 fuconate dehydratase -2.0 Yes
L-Fucose BBR_RS21115 hypothetical protein -1.3  
Lacto-N-fucopentaose II BBR_RS13095 beta-galactosidase -1.6  
Lacto-N-neotetraose BBR_RS16865 glucosamine-6-phosphate deaminase -1.1  
Lacto-N-neotetraose BBR_RS18475 DUF4981 domain-containing protein -2.3  
Lacto-N-neotetraose BBR_RS18490 sugar ABC transporter substrate-binding protein -3.0  
Lacto-N-neotetraose BBR_RS18500 beta-N-acetylhexosaminidase -6.6  
Lacto-N-tetraose BBR_RS13095 beta-galactosidase -6.5  
Lacto-N-tetraose BBR_RS16865 glucosamine-6-phosphate deaminase -1.4  
Lacto-N-tetraose BBR_RS18500 beta-N-acetylhexosaminidase -6.7  
Lacto-N-tetraose BBR_RS18665 carbohydrate ABC transporter permease -1.0  
Lacto-N-tetraose BBR_RS18675 Solute-binding protein of ABC transporter system for sugars -1.1  
Melibiose BBR_RS18480 LacI family DNA-binding transcriptional regulator +3.7  
Prebiotin-prebiotic BBR_RS10430 LacI family transcriptional regulator +2.3  
PreticX-prebiotic BBR_RS10815 sugar ABC transporter permease -1.0  
PreticX-prebiotic BBR_RS10820 carbohydrate ABC transporter permease -1.0  
PreticX-prebiotic BBR_RS10825 beta-glucosidase -1.7  
Promitor-fiber BBR_RS10825 beta-glucosidase -1.7  
Promitor-fiber BBR_RS10835 DUF3459 domain-containing protein -1.1  
Sialyllacto-N-tetraose a BBR_RS13095 beta-galactosidase -1.5  
Sialyllacto-N-tetraose a BBR_RS18500 beta-N-acetylhexosaminidase -1.2  
Sucrose BBR_RS10400 carbohydrate ABC transporter permease -2.1  
Sucrose BBR_RS10405 sugar ABC transporter permease -1.9  
Sucrose BBR_RS10430 LacI family transcriptional regulator +1.4  
Sucrose BBR_RS12140 LacI family transcriptional regulator -1.8  
Sucrose BBR_RS14440 Cof-type HAD-IIB family hydrolase -1.5  
Sunfiber-fiber BBR_RS10430 LacI family transcriptional regulator +1.8  
Yacontrol-prebiotic BBR_RS10360 DUF624 domain-containing protein -1.3  
Yacontrol-prebiotic BBR_RS10365 LacI family DNA-binding transcriptional regulator -1.7  
amylopectin from maize BBR_RS10430 LacI family transcriptional regulator +2.4  
amylopectin from maize BBR_RS11160 FadR family transcriptional regulator +1.9  
amylopectin from maize BBR_RS12140 LacI family transcriptional regulator -1.8  
amylopectin from maize BBR_RS14810 ROK family protein -1.4  
p-lacto-N-neo-hexaose BBR_RS18490 sugar ABC transporter substrate-binding protein +1.3