| Condition | Gene | Description | Fitness | Cons. |
|---|
| 2-Deoxy-D-Ribose | BPHYT_RS01740 | hypothetical protein | -1.2 | Yes |
| 2-Deoxy-D-Ribose | BPHYT_RS01830 | LacI family transcriptional regulator | -2.3 | |
| 2-Deoxy-D-Ribose | BPHYT_RS07000 | acetyl-CoA synthetase | -2.1 | Yes |
| 2-Deoxy-D-Ribose | BPHYT_RS11325 | voltage-gated chloride channel protein ClcB | -1.3 | |
| 2-Deoxy-D-Ribose | BPHYT_RS11365 | TetR family transcriptional regulator | -1.3 | |
| 2-Deoxy-D-Ribose | BPHYT_RS15470 | tRNA (guanine-N(7)-)-methyltransferase | -2.1 | Yes |
| 2-Deoxy-D-Ribose | BPHYT_RS21705 | sulfoacetaldehyde acetyltransferase | -2.5 | |
| 2-Deoxy-D-Ribose | BPHYT_RS22600 | transport protein RbsD/FucU | +2.2 | Yes |
| 2-Deoxy-D-Ribose | BPHYT_RS25785 | sugar ABC transporter permease | +4.3 | Yes |
| 2-Deoxy-D-Ribose | BPHYT_RS25805 | deoxyribose kinase (EC 2.7.1.15) (from data) | -4.0 | Yes |
| 2-Deoxy-D-Ribose | BPHYT_RS25810 | acetaldehyde dehydrogenase (EC 1.2.1.3) (from data) | -6.1 | Yes |
| 2-Deoxy-D-ribonic acid lithium salt | BPHYT_RS01830 | LacI family transcriptional regulator | -1.6 | |
| 2-Deoxy-D-ribonic acid lithium salt | BPHYT_RS07000 | acetyl-CoA synthetase | -1.1 | |
| 2-Deoxy-D-ribonic acid lithium salt | BPHYT_RS09150 | acetyl-CoA acetyltransferase | +3.3 | Yes |
| 2-Deoxy-D-ribonic acid lithium salt | BPHYT_RS10950 | transcriptional regulator | +10.0 | |
| 2-Deoxy-D-ribonic acid lithium salt | BPHYT_RS12875 | oligopeptidase A | -1.6 | |
| 2-Deoxy-D-ribonic acid lithium salt | BPHYT_RS16575 | Xaa-Pro aminopeptidase | -1.4 | |
| 2-Deoxy-D-ribonic acid lithium salt | BPHYT_RS21750 | major facilitator transporter | -1.1 | |
| 2-Deoxy-D-ribonic acid lithium salt | BPHYT_RS34340 | Fis family transcriptional regulator | +2.5 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS02940 | adenine phosphoribosyltransferase | +6.9 | Yes |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS03555 | glutamine-synthetase adenylyltransferase | +4.0 | Yes |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS03880 | LysR family transcriptional regulator | +2.4 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS03980 | mannose-1-phosphate guanyltransferase | +1.6 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS04050 | group 1 glycosyl transferase | +1.3 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS04055 | PST family polysaccharide export protein | +1.8 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS07520 | permease | +1.6 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS07615 | glycogen synthase | +2.5 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS07995 | diguanylate phosphodiesterase | -2.8 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS08580 | ADP-ribose pyrophosphatase | +2.7 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS08835 | glyoxylate carboligase | +2.0 | Yes |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS08840 | LysR family transcriptional regulator | +1.9 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS09400 | spermidine/putrescine ABC transporter ATPase | +1.2 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS09405 | branched-chain amino acid ABC transporter substrate-binding protein | +1.5 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS11325 | voltage-gated chloride channel protein ClcB | +4.1 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS11515 | LysR family transcriptional regulator | +1.3 | Yes |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS11545 | allantoicase | +1.6 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS13655 | GTP pyrophosphokinase | +2.2 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS14655 | Fis family transcriptional regulator | +1.8 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS15080 | FAD-binding molybdopterin dehydrogenase | +2.1 | Yes |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS15085 | aldehyde oxidase | +1.8 | Yes |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS15095 | adenine deaminase | +1.1 | Yes |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS15450 | chromosome partitioning protein | +1.5 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS15455 | hypothetical protein | +1.9 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS16455 | ferritin | +1.2 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS16895 | competence damage-inducible protein A | -1.7 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS17085 | hypoxanthine phosphoribosyltransferase | +2.6 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS18620 | transcriptional regulator | +1.5 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS21240 | LuxR family transcriptional regulator | +1.2 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS21705 | sulfoacetaldehyde acetyltransferase | +1.8 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS21740 | IclR family transcriptional regulator | +2.8 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS21745 | choline dehydrogenase | +3.1 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS21750 | major facilitator transporter | +2.7 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS22235 | sensor histidine kinase | -1.8 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS22240 | hypothetical protein | -1.8 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS22245 | transporter for D-alanine, D-lactate, and pyruvate (MctP) (from data) | -1.5 | Yes |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS33635 | AMP nucleosidase | -2.4 | |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS33980 | aconitate hydratase | +1.3 | Yes |
| 2-Deoxyadenosine 5-monophosphate | BPHYT_RS36565 | hypothetical protein | +1.4 | |
| Azelaic acid | BPHYT_RS03780 | acyl-CoA dehydrogenase | -4.6 | Yes |
| Azelaic acid | BPHYT_RS09560 | 3-hydroxyacyl-CoA dehydrogenase | -2.8 | |
| Azelaic acid | BPHYT_RS20305 | hypothetical protein | -4.4 | Yes |
| Azelaic acid | BPHYT_RS25035 | long-chain fatty acid--CoA ligase | -3.3 | |
| D-Alanine | BPHYT_RS12965 | fatty acid hydroxylase | -1.5 | |
| D-Alanine | BPHYT_RS12970 | hypothetical protein | -1.6 | |
| D-Alanine | BPHYT_RS14785 | AsnC family transcriptional regulator | -3.3 | Yes |
| D-Alanine | BPHYT_RS14790 | D-amino acid dehydrogenase | -3.5 | Yes |
| D-Alanine | BPHYT_RS22240 | hypothetical protein | -1.1 | Yes |
| D-Alanine | BPHYT_RS22245 | transporter for D-alanine, D-lactate, and pyruvate (MctP) (from data) | -1.3 | Yes |
| D-Alanine | BPHYT_RS33220 | group 1 glycosyl transferase | -1.4 | |
| D-Fructose | BPHYT_RS22740 | ABC transporter permease | -1.8 | Yes |
| D-Galactose | BPHYT_RS16405 | galactonate dehydratase [EC: 4.2.1.6] (from data) | -2.6 | Yes |
| D-Galactose | BPHYT_RS16920 | L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) | -2.1 | Yes |
| D-Galactose | BPHYT_RS16925 | D-galactose ABC transporter, permease component (from data) | -1.9 | Yes |
| D-Galactose | BPHYT_RS16930 | D-galactose ABC transporter, ATPase component (from data) | -2.1 | Yes |
| D-Galactose | BPHYT_RS16935 | D-galactose ABC transporter, substrate-binding component (from data) | -2.1 | Yes |
| D-Galactose | BPHYT_RS16940 | short-chain dehydrogenase | -2.2 | Yes |
| D-Galactose | BPHYT_RS16945 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase | -6.2 | Yes |
| D-Galactose | BPHYT_RS16955 | IclR family transcriptional regulator | -3.1 | Yes |
| D-Galacturonic Acid monohydrate | BPHYT_RS24155 | 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) | -2.2 | Yes |
| D-Gluconic Acid sodium salt | BPHYT_RS11290 | 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) (from data) | -2.4 | Yes |
| D-Gluconic Acid sodium salt | BPHYT_RS16720 | Gluconokinase (EC 2.7.1.12) (from data) | -5.6 | Yes |
| D-Gluconic Acid sodium salt | BPHYT_RS16725 | gluconate:H+ symporter (gntT) (from data) | -4.1 | Yes |
| D-Glucosamine Hydrochloride | BPHYT_RS01695 | L-glyceraldehyde 3-phosphate reductase | +1.1 | |
| D-Glucosamine Hydrochloride | BPHYT_RS02735 | Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) | -3.6 | Yes |
| D-Glucosamine Hydrochloride | BPHYT_RS06885 | NADP-dependent aryl-alcohol dehydrogenase | +1.1 | |
| D-Glucosamine Hydrochloride | BPHYT_RS15780 | ABC transporter ATP-binding protein | -1.2 | Yes |
| D-Glucosamine Hydrochloride | BPHYT_RS15795 | hypothetical protein | -1.7 | Yes |
| D-Glucosamine Hydrochloride | BPHYT_RS15800 | GntR family transcriptional regulator | +7.0 | Yes |
| D-Glucosamine Hydrochloride | BPHYT_RS15805 | carnitine dehydratase | -1.2 | Yes |
| D-Glucosamine Hydrochloride | BPHYT_RS16505 | HAD family hydrolase | -2.0 | Yes |
| D-Glucosamine Hydrochloride | BPHYT_RS19055 | COF family hydrolase | -2.3 | |
| D-Glucosamine Hydrochloride | BPHYT_RS22485 | NADP-dependent aryl-alcohol dehydrogenase | +1.6 | |
| D-Glucose | BPHYT_RS15490 | coproporphyrinogen III oxidase | variable | |
| D-Glucose | BPHYT_RS33635 | AMP nucleosidase | +2.3 | Yes |
| D-Glucose | BPHYT_RS34170 | methyltransferase | +1.2 | |
| D-Ribose | BPHYT_RS20675 | LysR family transcriptional regulator | -3.5 | |
| D-Ribose | BPHYT_RS20685 | ribose ABC transporter ATPase | -2.8 | Yes |
| D-Sorbitol | BPHYT_RS16095 | ABC transporter for D-Sorbitol, ATPase component (from data) | -4.1 | Yes |
| D-Sorbitol | BPHYT_RS16105 | ABC transporter for D-Sorbitol, permease component 1 (from data) | -3.5 | Yes |
| D-Sorbitol | BPHYT_RS16110 | ABC transporter for D-Sorbitol, permease component 2 (from data) | -4.0 | Yes |
| D-Sorbitol | BPHYT_RS16115 | ABC transporter for D-Sorbitol, periplasmic substrate-binding component (from data) | -3.8 | Yes |
| D-Sorbitol | BPHYT_RS16120 | sorbitol dehydrogenase, D-fructose forming (EC 1.1.1.14) (from data) | -3.9 | Yes |
| D-Xylose | BPHYT_RS03975 | AraC family transcriptional regulator | +1.3 | |
| D-Xylose | BPHYT_RS03980 | mannose-1-phosphate guanyltransferase | +1.3 | |
| D-Xylose | BPHYT_RS04055 | PST family polysaccharide export protein | +1.4 | |
| D-Xylose | BPHYT_RS14655 | Fis family transcriptional regulator | +1.7 | |
| D-Xylose | BPHYT_RS17865 | membrane protein | -1.8 | |
| D-Xylose | BPHYT_RS27100 | RNase II stability modulator | -2.5 | |
| D-Xylose | BPHYT_RS32825 | Xylose isomerase (EC 5.3.1.5) (from data) | -4.5 | Yes |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS01465 | lysine transporter LysE | +1.2 | Yes |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS02940 | adenine phosphoribosyltransferase | +5.4 | Yes |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS03555 | glutamine-synthetase adenylyltransferase | +3.5 | Yes |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS03865 | FAD-binding molybdopterin dehydrogenase | -1.1 | Yes |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS03870 | xanthine dehydrogenase, molybdopterin binding subunit (EC 1.17.1.4) (from data) | -1.2 | Yes |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS03880 | LysR family transcriptional regulator | -1.3 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS05060 | membrane protein | +1.1 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS11545 | allantoicase | -1.7 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS12520 | nicotinate phosphoribosyltransferase | +2.2 | Yes |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS12830 | dihydrolipoamide dehydrogenase | -1.3 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS14535 | nicotinate phosphoribosyltransferase | -1.3 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS15095 | adenine deaminase | +1.4 | Yes |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS15100 | guanine deaminase | -1.3 | Yes |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS15450 | chromosome partitioning protein | +2.4 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS15455 | hypothetical protein | +2.9 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS15575 | CDP-6-deoxy-delta-3,4-glucoseen reductase | +1.5 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS15715 | ATP-dependent Clp protease adapter protein ClpS | -1.4 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS16300 | hypothetical protein | -1.8 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS16895 | competence damage-inducible protein A | -1.6 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS17085 | hypoxanthine phosphoribosyltransferase | +2.8 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS21240 | LuxR family transcriptional regulator | +1.1 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS22245 | transporter for D-alanine, D-lactate, and pyruvate (MctP) (from data) | -1.3 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS29965 | amidase | +1.2 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS33635 | AMP nucleosidase | -1.9 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS34660 | DNA-binding protein | -1.3 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS36555 | hypothetical protein | +1.7 | |
| Deoxyribonucleic acid from herring sperm | BPHYT_RS36565 | hypothetical protein | +1.6 | |
| Disodium Glutarate | BPHYT_RS03780 | acyl-CoA dehydrogenase | -5.1 | |
| Disodium Glutarate | BPHYT_RS11175 | alpha-ketoglutarate transporter | -2.6 | Yes |
| Disodium Glutarate | BPHYT_RS13985 | CoA transferase | -3.0 | |
| Disodium Glutarate | BPHYT_RS18620 | transcriptional regulator | +1.8 | |
| Disodium Glutarate | BPHYT_RS19975 | IclR family transcriptional regulator | -3.1 | |
| Disodium Glutarate | BPHYT_RS20305 | hypothetical protein | -5.7 | |
| Disodium Glutarate | BPHYT_RS29425 | IclR family transcriptional regulator | +2.0 | Yes |
| Disodium Glutarate | BPHYT_RS32820 | xylose ABC transporter substrate-binding protein | +3.3 | |
| Dodecandioic acid | BPHYT_RS13540 | LysR family transcriptional regulator | -2.2 | Yes |
| Dodecandioic acid | BPHYT_RS17295 | long-chain fatty acid--CoA ligase | -1.8 | Yes |
| Dodecandioic acid | BPHYT_RS20305 | hypothetical protein | -2.0 | |
| Dodecandioic acid | BPHYT_RS25035 | long-chain fatty acid--CoA ligase | -3.1 | |
| Gly-Glu | BPHYT_RS09435 | MarR family transcriptional regulator | +2.4 | |
| Gly-Glu | BPHYT_RS17155 | peptidase A24 | -1.1 | |
| Gly-Glu | BPHYT_RS18805 | flagellar basal body protein FliL | +1.6 | |
| Gly-Glu | BPHYT_RS19330 | glycine cleavage system P protein (EC 1.4.4.2) (from data) | -1.9 | Yes |
| Gly-Glu | BPHYT_RS19535 | XRE family transcriptional regulator | -3.0 | |
| Gly-Glu | BPHYT_RS19540 | sensor histidine kinase | -2.1 | |
| Gly-Glu | BPHYT_RS26405 | glycogen synthase | +1.1 | |
| L-Alanine | BPHYT_RS08455 | ribonuclease R | -1.5 | |
| L-Alanine | BPHYT_RS14785 | AsnC family transcriptional regulator | -5.9 | Yes |
| L-Alanine | BPHYT_RS14790 | D-amino acid dehydrogenase | -4.5 | Yes |
| L-Arabinose | BPHYT_RS16915 | L-arabinono-1,4-lactonase; galactonolactonase (from data) | -2.0 | Yes |
| L-Arabinose | BPHYT_RS16920 | L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) | -2.3 | Yes |
| L-Arabinose | BPHYT_RS19705 | LysR family transcriptional regulator | -2.7 | |
| L-Arabinose | BPHYT_RS19720 | arabinose ABC transporter ATP-binding protein | -2.4 | Yes |
| L-Arabinose | BPHYT_RS19730 | L-arabonate dehydratase (EC 4.2.1.25) (from data) | -2.8 | Yes |
| L-Arginine | BPHYT_RS07680 | ABC transporter for L-Arginine, permease component 1 (from data) | -3.1 | Yes |
| L-Arginine | BPHYT_RS07720 | Succinylglutamate desuccinylase (EC 3.5.1.96) (from data) | -3.6 | Yes |
| L-Arginine | BPHYT_RS07735 | ABC transporter for L-Arginine, periplasmic substrate-binding component (from data) | -3.2 | |
| L-Asparagine | BPHYT_RS01885 | branched-chain amino acid ABC transporter substrate-binding protein | -3.0 | |
| L-Asparagine | BPHYT_RS08815 | L-asparaginase (EC 3.5.1.1) (from data) | -4.0 | Yes |
| L-Asparagine | BPHYT_RS15590 | amino acid ABC transporter ATPase | -3.1 | |
| L-Asparagine | BPHYT_RS15595 | ABC transporter | -2.8 | |
| L-Asparagine | BPHYT_RS15600 | ABC transporter ATP-binding protein | -3.0 | |
| L-Asparagine | BPHYT_RS15605 | ABC transporter permease | -2.7 | |
| L-Asparagine | BPHYT_RS15610 | branched-chain amino acid ABC transporter substrate-binding protein | -2.2 | Yes |
| L-Asparagine | BPHYT_RS17540 | L-aspartate/L-glutamate/L-glutamine:H+ symporter (from data) | -1.6 | Yes |
| L-Asparagine | BPHYT_RS19355 | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase | +1.7 | |
| L-Fucose | BPHYT_RS26970 | L-lactate dehydrogenase, LldF subunit (from data) | -2.6 | |
| L-Fucose | BPHYT_RS34210 | 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) (from data) | -4.6 | Yes |
| L-Fucose | BPHYT_RS34215 | 2-keto-3-deoxy-L-fuconate 4-dehydrogenase FucDH (from data) | -5.1 | Yes |
| L-Fucose | BPHYT_RS34225 | L-fucose dehydrogenase (EC 1.1.1.122) (from data) | -5.1 | Yes |
| L-Fucose | BPHYT_RS34230 | L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) | -4.7 | |
| L-Fucose | BPHYT_RS34250 | ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) | -6.0 | Yes |
| L-Glutamine | BPHYT_RS01885 | branched-chain amino acid ABC transporter substrate-binding protein | -2.6 | |
| L-Glutamine | BPHYT_RS02305 | methionine synthase | -1.9 | |
| L-Glutamine | BPHYT_RS02310 | 5-methyltetrahydrofolate--homocysteine methyltransferase | -1.9 | |
| L-Glutamine | BPHYT_RS03210 | cardiolipin synthetase | +1.2 | |
| L-Glutamine | BPHYT_RS05675 | hypothetical protein | -1.3 | |
| L-Glutamine | BPHYT_RS15590 | amino acid ABC transporter ATPase | -2.9 | |
| L-Glutamine | BPHYT_RS15595 | ABC transporter | -2.8 | Yes |
| L-Glutamine | BPHYT_RS15600 | ABC transporter ATP-binding protein | -2.4 | |
| L-Glutamine | BPHYT_RS15605 | ABC transporter permease | -2.2 | |
| L-Glutamine | BPHYT_RS15610 | branched-chain amino acid ABC transporter substrate-binding protein | -1.6 | |
| L-Glutamine | BPHYT_RS17540 | L-aspartate/L-glutamate/L-glutamine:H+ symporter (from data) | -1.9 | |
| L-Glutamine | BPHYT_RS18310 | malic enzyme | -1.5 | Yes |
| L-Glutamine | BPHYT_RS18620 | transcriptional regulator | -1.7 | |
| L-Glutamine | BPHYT_RS18625 | allophanate hydrolase | -1.2 | Yes |
| L-Glutamine | BPHYT_RS19355 | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase | +3.5 | |
| L-Glutamine | BPHYT_RS22695 | TetR family transcriptional regulator | -1.4 | |
| L-Histidine | BPHYT_RS07555 | Histidine ammonia-lyase (EC 4.3.1.3) (from data) | -9.1 | Yes |
| L-Histidine | BPHYT_RS07585 | N-formylglutamate deformylase (EC 3.5.1.68) (from data) | -7.6 | Yes |
| L-Histidine | BPHYT_RS09375 | (2Fe-2S)-binding protein | -1.3 | |
| L-Histidine | BPHYT_RS15590 | amino acid ABC transporter ATPase | -1.6 | |
| L-Histidine | BPHYT_RS24000 | L-histidine ABC transporter, substrate-binding component (from data) | -1.2 | |
| L-Malic acid disodium salt monohydrate | BPHYT_RS02510 | C4-dicarboxylate ABC transporter | -4.1 | Yes |
| L-Malic acid disodium salt monohydrate | BPHYT_RS02515 | ATPase | -3.6 | Yes |
| L-Malic acid disodium salt monohydrate | BPHYT_RS02520 | Fis family transcriptional regulator | -3.0 | Yes |
| L-Phenylalanine | BPHYT_RS01920 | AsnC family transcriptional regulator | -6.7 | Yes |
| L-Phenylalanine | BPHYT_RS02015 | phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) (from data) | -5.0 | Yes |
| L-Phenylalanine | BPHYT_RS13545 | 3-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) (from data) | -2.1 | Yes |
| L-Phenylalanine | BPHYT_RS14905 | Aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) | -1.2 | |
| L-Phenylalanine | BPHYT_RS17335 | 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data) | -6.3 | Yes |
| L-Phenylalanine | BPHYT_RS17340 | 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) | -6.3 | Yes |
| L-Phenylalanine | BPHYT_RS17345 | bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data) | -1.9 | Yes |
| L-Proline | BPHYT_RS15595 | ABC transporter | -4.0 | Yes |
| L-Proline | BPHYT_RS15600 | ABC transporter ATP-binding protein | -4.7 | |
| L-Proline | BPHYT_RS15605 | ABC transporter permease | -5.0 | |
| L-Proline | BPHYT_RS15610 | branched-chain amino acid ABC transporter substrate-binding protein | -2.7 | Yes |
| L-Proline | BPHYT_RS19355 | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase | -5.5 | Yes |
| L-Rhamnose monohydrate | BPHYT_RS26970 | L-lactate dehydrogenase, LldF subunit (from data) | -1.7 | Yes |
| L-Rhamnose monohydrate | BPHYT_RS28235 | L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) (from data) | -2.9 | Yes |
| L-Rhamnose monohydrate | BPHYT_RS34210 | 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) (from data) | -5.6 | Yes |
| L-Rhamnose monohydrate | BPHYT_RS34225 | L-fucose dehydrogenase (EC 1.1.1.122) (from data) | -4.6 | |
| L-Rhamnose monohydrate | BPHYT_RS34230 | L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) | -2.3 | |
| L-Rhamnose monohydrate | BPHYT_RS34245 | ABC transporter for L-rhamnose/L-fucose/xylitol, ATPase component (from data) | -2.5 | |
| L-Rhamnose monohydrate | BPHYT_RS34250 | ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) | -2.9 | |
| L-Tryptophan | BPHYT_RS03780 | acyl-CoA dehydrogenase | -3.7 | Yes |
| L-Tryptophan | BPHYT_RS09150 | acetyl-CoA acetyltransferase | -1.3 | |
| L-Tryptophan | BPHYT_RS14785 | AsnC family transcriptional regulator | -1.9 | Yes |
| L-Tryptophan | BPHYT_RS16030 | Kynureninase (EC 3.7.1.3) (from data) | -4.6 | Yes |
| L-Tryptophan | BPHYT_RS35445 | 2-aminobenzoate-CoA ligase [EC: 6.2.1.32] (from data) | -2.0 | Yes |
| L-Tryptophan | BPHYT_RS35460 | acyl-CoA dehydrogenase | -3.8 | Yes |
| L-Tryptophan | BPHYT_RS35465 | enoyl-CoA hydratase | -2.4 | Yes |
| Malonic acid | BPHYT_RS07000 | acetyl-CoA synthetase | -4.1 | |
| Malonic acid | BPHYT_RS14835 | deacetylase | -1.6 | |
| Malonic acid | BPHYT_RS23905 | malonate decarboxylase subunit epsilon | -2.6 | Yes |
| Malonic acid | BPHYT_RS23935 | malonate decarboxylase subunit alpha | -3.2 | Yes |
| N-Acetyl-D-Glucosamine | BPHYT_RS02730 | N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) | -3.1 | Yes |
| N-Acetyl-D-Glucosamine | BPHYT_RS02735 | Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) | -4.0 | Yes |
| N-Acetyl-D-Glucosamine | BPHYT_RS02740 | N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) (from data) | -2.4 | Yes |
| N-Acetyl-D-Glucosamine | BPHYT_RS02745 | N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data) | -2.6 | Yes |
| N-Acetyl-D-Glucosamine | BPHYT_RS14055 | aldose epimerase | -2.7 | |
| N-Acetyl-D-Glucosamine | BPHYT_RS24370 | glucose-6-phosphate 1-dehydrogenase | -1.5 | |
| Phenylacetic acid | BPHYT_RS02015 | phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) (from data) | -1.5 | Yes |
| Phenylacetic acid | BPHYT_RS13540 | LysR family transcriptional regulator | -1.3 | |
| Phenylacetic acid | BPHYT_RS15210 | aminopeptidase N | -1.1 | |
| Phenylacetic acid | BPHYT_RS17335 | 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data) | -2.9 | Yes |
| Phenylacetic acid | BPHYT_RS17340 | 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) | -4.4 | Yes |
| Phenylacetic acid | BPHYT_RS17345 | bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data) | -4.2 | Yes |
| Phenylacetic acid | BPHYT_RS17355 | phenylacetic acid degradation protein | -3.9 | Yes |
| Phenylacetic acid | BPHYT_RS17360 | phenylacetate-CoA ligase | -2.9 | Yes |
| Protocatechuic Acid | BPHYT_RS29385 | acetyl-CoA acetyltransferase | -6.0 | Yes |
| Protocatechuic Acid | BPHYT_RS30245 | porin | -2.9 | |
| Protocatechuic Acid | BPHYT_RS33635 | AMP nucleosidase | +3.3 | |
| Protocatechuic Acid | BPHYT_RS33980 | aconitate hydratase | -4.9 | |
| Putrescine Dihydrochloride | BPHYT_RS06095 | esterase | -2.2 | |
| Putrescine Dihydrochloride | BPHYT_RS14480 | ribosomal large subunit pseudouridine synthase C | -1.6 | |
| Putrescine Dihydrochloride | BPHYT_RS14785 | AsnC family transcriptional regulator | -2.9 | Yes |
| Putrescine Dihydrochloride | BPHYT_RS14790 | D-amino acid dehydrogenase | -4.1 | |
| Putrescine Dihydrochloride | BPHYT_RS15470 | tRNA (guanine-N(7)-)-methyltransferase | -2.7 | |
| Putrescine Dihydrochloride | BPHYT_RS22435 | 4-aminobutyrate aminotransferase | -1.7 | Yes |
| Putrescine Dihydrochloride | BPHYT_RS23160 | Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) | -4.0 | Yes |
| Sebacic acid | BPHYT_RS13540 | LysR family transcriptional regulator | -1.7 | |
| Sebacic acid | BPHYT_RS14835 | deacetylase | -1.6 | |
| Sebacic acid | BPHYT_RS25030 | gluconate 2-dehydrogenase | -4.7 | |
| Sebacic acid | BPHYT_RS25035 | long-chain fatty acid--CoA ligase | -5.5 | |
| Sodium D,L-Lactate | BPHYT_RS13655 | GTP pyrophosphokinase | -2.2 | |
| Sodium D,L-Lactate | BPHYT_RS26970 | L-lactate dehydrogenase, LldF subunit (from data) | -1.8 | Yes |
| Sodium D-Lactate | BPHYT_RS22245 | transporter for D-alanine, D-lactate, and pyruvate (MctP) (from data) | -1.0 | Yes |
| Sodium L-Lactate | BPHYT_RS26970 | L-lactate dehydrogenase, LldF subunit (from data) | -5.3 | Yes |
| Sodium L-Lactate | BPHYT_RS26990 | GntR family transcriptional regulator | +1.3 | Yes |
| Sodium adipate | BPHYT_RS11175 | alpha-ketoglutarate transporter | -4.7 | Yes |
| Sodium adipate | BPHYT_RS13540 | LysR family transcriptional regulator | -2.2 | Yes |
| Sodium adipate | BPHYT_RS13545 | 3-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) (from data) | -3.4 | |
| Sodium propionate | BPHYT_RS23815 | LysR family transcriptional regulator | +1.9 | Yes |
| Sodium propionate | BPHYT_RS23825 | hypothetical protein | +1.5 | |
| Sodium propionate | BPHYT_RS26850 | ATPase AAA | -3.8 | Yes |
| Sodium propionate | BPHYT_RS30150 | methylcitrate synthase | -4.8 | Yes |
| Sodium propionate | BPHYT_RS30155 | Fis family transcriptional regulator | -3.6 | Yes |
| Sodium propionate | BPHYT_RS33980 | aconitate hydratase | -2.6 | Yes |
| Sodium pyruvate | BPHYT_RS22235 | sensor histidine kinase | -1.6 | Yes |
| Sodium pyruvate | BPHYT_RS22240 | hypothetical protein | -1.8 | Yes |
| Sodium pyruvate | BPHYT_RS22245 | transporter for D-alanine, D-lactate, and pyruvate (MctP) (from data) | -1.7 | Yes |
| Sodium succinate dibasic hexahydrate | BPHYT_RS02165 | adenosylmethionine-8-amino-7-oxononanoate aminotransferase | -2.2 | Yes |
| Sodium succinate dibasic hexahydrate | BPHYT_RS02510 | C4-dicarboxylate ABC transporter | -4.2 | Yes |
| Sodium succinate dibasic hexahydrate | BPHYT_RS02515 | ATPase | -4.0 | Yes |
| Sodium succinate dibasic hexahydrate | BPHYT_RS02520 | Fis family transcriptional regulator | -3.4 | Yes |
| Sodium succinate dibasic hexahydrate | BPHYT_RS02900 | ribosome hibernation promoting factor | +1.8 | |
| Sodium succinate dibasic hexahydrate | BPHYT_RS05675 | hypothetical protein | -1.6 | |
| Sodium succinate dibasic hexahydrate | BPHYT_RS11180 | SpoVR family protein | variable | |
| Sodium succinate dibasic hexahydrate | BPHYT_RS11185 | hypothetical protein | variable | |
| Sodium succinate dibasic hexahydrate | BPHYT_RS11190 | PrkA family serine protein kinase | +2.5 | |
| Sodium succinate dibasic hexahydrate | BPHYT_RS14525 | sodium:proton antiporter | variable | |
| Sodium succinate dibasic hexahydrate | BPHYT_RS15435 | ethyl tert-butyl ether degradation EthD | variable | |
| Sodium succinate dibasic hexahydrate | BPHYT_RS16455 | ferritin | +1.4 | |
| Sodium succinate dibasic hexahydrate | BPHYT_RS16575 | Xaa-Pro aminopeptidase | variable | |
| Suberic acid | BPHYT_RS09555 | long-chain fatty acid--CoA ligase | -1.6 | |
| Suberic acid | BPHYT_RS25025 | acyl-CoA dehydrogenase | +3.6 | |
| Suberic acid | BPHYT_RS25035 | long-chain fatty acid--CoA ligase | -4.2 | |
| Trisodium citrate dihydrate | BPHYT_RS03220 | Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) | -1.1 | |
| Trisodium citrate dihydrate | BPHYT_RS06505 | TetR family transcriptional regulator | -1.3 | |
| Trisodium citrate dihydrate | BPHYT_RS11325 | voltage-gated chloride channel protein ClcB | -2.0 | |
| Trisodium citrate dihydrate | BPHYT_RS19975 | IclR family transcriptional regulator | +4.2 | |
| Trisodium citrate dihydrate | BPHYT_RS20100 | sensor histidine kinase | +1.4 | Yes |
| Trisodium citrate dihydrate | BPHYT_RS20305 | hypothetical protein | -1.3 | |
| Tween 20 | BPHYT_RS02240 | isocitrate dehydrogenase kinase/phosphatase | -1.9 | Yes |
| Tween 20 | BPHYT_RS03220 | Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) | -2.7 | Yes |
| Tween 20 | BPHYT_RS06505 | TetR family transcriptional regulator | -2.4 | Yes |
| Tween 20 | BPHYT_RS12305 | Malate synthase (EC 2.3.3.9) (from data) | -2.6 | Yes |
| Tween 20 | BPHYT_RS14795 | acyl-CoA dehydrogenase | -2.7 | Yes |
| Xylitol | BPHYT_RS03975 | AraC family transcriptional regulator | +1.8 | |
| Xylitol | BPHYT_RS03980 | mannose-1-phosphate guanyltransferase | +1.6 | |
| Xylitol | BPHYT_RS04000 | GDP-mannose 4,6-dehydratase | +1.5 | |
| Xylitol | BPHYT_RS04035 | transferase | +1.7 | |
| Xylitol | BPHYT_RS04045 | acyltransferase | +1.7 | |
| Xylitol | BPHYT_RS04050 | group 1 glycosyl transferase | +1.5 | |
| Xylitol | BPHYT_RS04055 | PST family polysaccharide export protein | +1.5 | |
| Xylitol | BPHYT_RS14655 | Fis family transcriptional regulator | +1.8 | |
| Xylitol | BPHYT_RS15730 | isocitrate dehydrogenase | +1.3 | |
| Xylitol | BPHYT_RS16045 | actin | +3.8 | Yes |
| Xylitol | BPHYT_RS16050 | xylitol 2-dehydrogenase (EC 1.1.1.9) (from data) | -2.8 | Yes |
| Xylitol | BPHYT_RS17725 | BolA family transcriptional regulator | -1.5 | |
| Xylitol | BPHYT_RS27100 | RNase II stability modulator | -2.5 | |
| Xylitol | BPHYT_RS34250 | ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) | -2.3 | |
| m-Inositol | BPHYT_RS13910 | 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) | -3.6 | Yes |
| m-Inositol | BPHYT_RS13920 | Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) | -4.9 | Yes |
| m-Inositol | BPHYT_RS13925 | 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) | -3.7 | Yes |
| m-Inositol | BPHYT_RS21560 | GntR family transcriptional regulator | -2.4 | Yes |