Fitness data for TX73_021225 in Rhodopseudomonas palustris CGA009

sigma-70 family RNA polymerase sigma factor
SEED: putative RNA polymerase ECF-type sigma factor

All 175 fitness values, sorted by group and condition


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group condition fitness t score  
carbon source 4-Aminobutyric (C); anaerobic +0.1 +0.4 compare
4-Aminobutyric (C); anaerobic +0.1 +0.6 compare
4-Aminobutyric (C); anaerobic +0.1 +0.4 compare
4-Aminobutyric (C); anaerobic +0.1 +0.4 compare
aspen wood chips that have been decomposed by a fungus (C) -0.2 -0.9 compare
aspen wood chips that have been decomposed by a fungus (C) -0.3 -1.3 compare
aspen wood chips that have been decomposed by a fungus (C) -0.8 -3.5 compare
Azelaic (C); anaerobic +0.2 +1.1 compare
Azelaic (C); anaerobic -0.1 -0.2 compare
Azelaic (C); anaerobic -0.2 -1.1 compare
Azelaic (C); anaerobic +0.2 +0.9 compare
Butyric Acid (C); anaerobic +0.2 +1.3 compare
Butyric Acid (C); anaerobic +0.4 +2.3 compare
Butyric Acid (C); anaerobic +0.1 +0.5 compare
Butyric Acid (C); anaerobic -0.2 -0.9 compare
Citraconic (C); anaerobic -0.1 -0.5 compare
Citraconic (C); anaerobic -0.2 -0.6 compare
Citraconic (C); anaerobic -0.1 -0.4 compare
Citraconic (C); anaerobic -0.2 -0.9 compare
L-Leucine (C); anaerobic +0.1 +0.6 compare
L-Malic (C); anaerobic -0.1 -0.4 compare
L-Malic (C); anaerobic +0.1 +0.8 compare
L-Malic (C); anaerobic -0.0 -0.1 compare
Pimelic (C); anaerobic -0.1 -0.5 compare
Pimelic (C); anaerobic +0.1 +0.6 compare
Pimelic (C); anaerobic +0.1 +0.4 compare
Pimelic (C); anaerobic -0.2 -1.1 compare
Sebacic (C); anaerobic -0.1 -0.7 compare
Sebacic (C); anaerobic +0.0 +0.1 compare
Sebacic (C); anaerobic -0.2 -1.1 compare
4-Hydroxybenzoate (C) -0.0 -0.1 compare
4-Hydroxybenzoate (C) -0.2 -0.9 compare
4-Hydroxybenzoate (C) +0.4 +2.1 compare
acetate trihydrate (C) +0.1 +0.5 compare
acetate trihydrate (C) -0.1 -0.4 compare
acetate trihydrate (C) +0.2 +1.1 compare
acetate trihydrate and Sodium L-Lactate (C) +0.2 +0.8 compare
acetate trihydrate and Sodium L-Lactate (C) +0.4 +1.5 compare
acetate trihydrate and Sodium L-Lactate (C) -0.5 -1.8 compare
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM -0.0 -0.2 compare
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM -0.1 -0.6 compare
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM -0.1 -0.6 compare
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM +0.0 +0.2 compare
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM +0.0 +0.3 compare
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM +0.1 +0.5 compare
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM +0.0 +0.0 compare
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM +0.3 +1.6 compare
MDC_bicarb with butyrate +0.0 +0.2 compare
MDC_bicarb with butyrate +0.0 +0.3 compare
MDC_bicarb with butyrate -0.1 -0.8 compare
MDC_bicarb with butyrate +0.0 +0.2 compare
MDC_bicarb with butyrate and Adenine +0.2 +1.3 compare
MDC_bicarb with butyrate and Adenine -0.1 -0.3 compare
MDC_bicarb with butyrate and Adenine +0.2 +0.8 compare
MDC_bicarb with butyrate and Adenine -0.2 -0.6 compare
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM +0.1 +0.5 compare
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM -0.1 -0.5 compare
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM +0.1 +0.9 compare
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM -0.1 -0.5 compare
PM with Formate and Sodium bicarbonate anaerobic with light +0.1 +0.7 compare
PM with Formate and Sodium bicarbonate anaerobic with light +0.3 +1.7 compare
PM with Formate and Sodium bicarbonate anaerobic with light +0.2 +1.1 compare
Fumarate (C); anaerobic -0.1 -0.9 compare
Fumarate (C); anaerobic +0.2 +1.0 compare
Fumarate (C); anaerobic +0.1 +0.8 compare
PM with succinate anaerobic with light +0.2 +1.3 compare
PM with succinate anaerobic with light +0.1 +0.9 compare
PM with succinate anaerobic with light +0.1 +0.7 compare
PM with succinate and Sodium Formate anaerobic with light +0.1 +0.7 compare
PM with succinate and Sodium Formate anaerobic with light +0.1 +0.6 compare
PM with succinate and Sodium Formate anaerobic with light -0.0 -0.1 compare
carbon source dark aerobic PM with butyrate aerobic in dark -0.1 -0.7 compare
PM with butyrate aerobic in dark +0.1 +0.3 compare
PM with butyrate aerobic in dark -0.1 -0.3 compare
PM with succinate aerobic in dark +0.1 +0.7 compare
PM with succinate aerobic in dark -0.1 -0.6 compare
PM with succinate aerobic in dark -0.2 -1.0 compare
PM with succinate aerobic in dark +0.1 +0.8 compare
PM with succinate aerobic in dark +0.2 +1.0 compare
PM with succinate aerobic in dark +0.0 +0.1 compare
PM with succinate and Sodium Formate aerobic in dark +0.1 +0.4 compare
PM with succinate and Sodium Formate aerobic in dark -0.1 -0.5 compare
coculture dpurH coculture with Glucose and NaCl and NH4Cl +0.2 +1.0 compare
dpurH coculture with Glucose and NaCl and NH4Cl -0.0 -0.0 compare
dpurH coculture with Glucose and NaCl and NH4Cl +0.1 +0.9 compare
monoculture OAcsForEtOH (C); monoculture +0.2 +1.6 compare
OAcsForEtOH (C); monoculture +0.1 +0.5 compare
OAcsForEtOH (C); monoculture -0.1 -0.4 compare
stress Benzoate (C), sodium fluoride stress -0.1 -1.0 compare
Benzoate (C), sodium fluoride stress -0.3 -1.4 compare
Benzoate (C), sodium fluoride stress -0.2 -0.8 compare
PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark -0.2 -1.2 compare
PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark +0.1 +0.9 compare
PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark -0.1 -0.8 compare
PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark -0.1 -0.5 compare
PM_argon75_N2O25 with buyrate and 0.1 mM Chloride; in dark +0.1 +0.5 compare
PM_argon75_N2O25 butyrate and Chloride 0.1 mM +0.1 +0.9 compare
PM_argon75_N2O25 butyrate and Chloride 0.1 mM +0.1 +0.8 compare
PM_argon75_N2O25 butyrate and Chloride 0.1 mM +0.2 +0.7 compare
PM_argon75_N2O25 butyrate and Chloride 0.1 mM +0.1 +0.5 compare
PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark +0.3 +1.6 compare
PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark +0.2 +0.9 compare
PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark -0.1 -0.8 compare
PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark +0.0 +0.1 compare
PM_argon75_N2O25 butyrate and nitrate 0.1 mM -0.2 -1.0 compare
PM_argon75_N2O25 butyrate and nitrate 0.1 mM -0.1 -0.6 compare
PM_argon75_N2O25 butyrate and nitrate 0.1 mM +0.1 +0.4 compare
PM_argon75_N2O25 butyrate and nitrate 0.1 mM +0.1 +0.8 compare
PM_N2O butyrate and nitrate 0.1 mM -0.1 -0.4 compare
PM_N2O butyrate and nitrate 0.1 mM +0.0 +0.1 compare
PM_N2O butyrate and nitrate 0.1 mM -0.1 -1.0 compare
PM_N2O butyrate and nitrate 0.1 mM +0.0 +0.3 compare
L-Lactate (C) with 10 mM Sodium Chloride +0.1 +0.3 compare
L-Lactate (C) with 10 mM Sodium Chloride +0.1 +0.2 compare
L-Lactate (C) with 10 mM Sodium Chloride +0.1 +0.3 compare
sulfur source 2-(Methylthio)ethanol sulfur source +0.0 +0.1 compare
2-(Methylthio)ethanol sulfur source +0.0 +0.0 compare
2-(Methylthio)ethanol sulfur source -0.2 -1.4 compare
2-(Methylthio)ethanol sulfur source -0.0 -0.3 compare
ethyl methyl sulfide sulfur source -0.1 -0.6 compare
ethyl methyl sulfide sulfur source +0.1 +0.8 compare
ethyl methyl sulfide sulfur source -0.0 -0.1 compare
ethyl methyl sulfide sulfur source -0.1 -0.4 compare
sodium isethionate sulfur source +0.3 +1.8 compare
sodium isethionate sulfur source +0.1 +0.4 compare
sodium isethionate sulfur source -0.1 -0.4 compare
Taurine sulfur source -0.1 -0.3 compare
Taurine sulfur source -0.0 -0.2 compare
Taurine sulfur source -0.1 -0.8 compare
Taurine sulfur source -0.0 -0.0 compare
Thiamine HCl sulfur source -0.2 -0.8 compare
Thiamine HCl sulfur source -0.0 -0.1 compare
Thiamine HCl sulfur source -0.2 -1.1 compare
Thiamine HCl sulfur source +0.0 +0.3 compare
NFM_No_Mo_Plus_VCl3 with acetate trihydrate -0.2 -1.2 compare
NFM_No_Mo_Plus_VCl3 with acetate trihydrate -0.1 -0.6 compare
NFM_No_Mo_Plus_VCl3 with acetate trihydrate +0.1 +0.4 compare
NFM_No_Mo with acetate trihydrate +0.2 +1.4 compare
NFM_No_Mo with acetate trihydrate +0.0 +0.2 compare
NFM_No_Mo with acetate trihydrate +0.1 +0.6 compare
Dimethylsulfoniopropionate sulfur source +0.0 +0.2 compare
Dimethylsulfoniopropionate sulfur source -0.2 -0.9 compare
Dimethylsulfoniopropionate sulfur source +0.1 +0.6 compare
Sulfoacetic sulfur source -0.1 -0.5 compare
Sulfoacetic sulfur source -0.1 -0.6 compare
Sulfoacetic sulfur source -0.0 -0.0 compare
Sulfoacetic sulfur source +0.0 +0.1 compare
NFM with pyruvate -0.3 -0.8 compare
NFM with pyruvate +0.3 +1.3 compare
NFM with succinate +0.1 +0.5 compare
NFM with succinate -0.0 -0.2 compare
NFM with succinate +0.3 +1.6 compare
sulfur source control sulfur source control +0.0 +0.1 compare
sulfur source control +0.2 +0.7 compare
sulfur source control -0.1 -0.4 compare
sulfur source control -0.1 -0.7 compare
Dimethyl sulfide sulfur source +0.2 +1.3 compare
Dimethyl sulfide sulfur source -0.2 -1.0 compare
Dimethyl sulfide sulfur source +0.0 +0.1 compare
survival starvation expt 1; 14 days; outgrowth in CAAc +0.2 +0.9 compare
starvation expt 1; 3 days; outgrowth in CAAc +0.0 +0.1 compare
starvation expt 1; 7 days; outgrowth in CAAc -0.1 -0.3 compare
starvation expt 2; 14 days; outgrowth in CAAc +0.0 +0.1 compare
starvation expt 2; 3 days; outgrowth in CAAc -0.3 -1.1 compare
starvation expt 2; 7 days; outgrowth in CAAc +0.1 +0.4 compare
starvation expt 3; 14 days; outgrowth in CAAc -0.1 -0.6 compare
starvation expt 3; 3 days; outgrowth in CAAc +0.0 +0.0 compare
starvation expt 3; 7 days; outgrowth in CAAc -0.2 -0.7 compare
starvation expt 4; 14 days; outgrowth in CAAc -0.1 -0.3 compare
starvation expt 4; 3 days; outgrowth in CAAc -0.0 -0.0 compare
starvation expt 4; 7 days; outgrowth in CAAc +0.0 +0.1 compare
survival outgrowth control starvation outgrowth control in CAAc +0.0 +0.2 compare
starvation outgrowth control in CAAc +0.1 +0.3 compare
starvation outgrowth control in CAAc -0.1 -0.5 compare
starvation outgrowth control in CAAc +0.2 +0.9 compare