Fitness data for SM_b21044 in Sinorhizobium meliloti 1021

ATP-dependent DNA ligase
SEED: ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
carbon source acetate (C) -0.3 -1.8 compare
nitrogen source D-Glucosamine Hydrochloride (N) -0.2 -1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.9 compare
volatiles R2A-HEPES with volatiles from Trichoderma atroviridae IMI +0.2 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.9 compare
temperature LB, 23C +0.2 +1.5 compare
stress nitrate 40 mM +0.2 +0.9 compare
stress 6-Pentyl-2H-pyran-2-one 0.385649 mM +0.2 +1.9 compare
r2a-hepes control R2A-HEPES control for volatile experiments +0.2 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +1.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.4 compare
volatiles R2A-HEPES with volatiles from Trichoderma atroviridae IMI +0.3 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.6 compare
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.3 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +1.4 compare
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.3 +1.6 compare
stress perchlorate 10 mM +0.4 +1.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.8 compare
pH LB, pH6 +0.4 +1.2 compare
pH LB, pH6 +0.5 +1.4 compare