Fitness data for RS_RS05225 in Ralstonia solanacearum GMI1000

RNA polymerase sigma factor RpoE
SEED: RNA polymerase sigma factor RpoE
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

All 110 fitness values, sorted by group and condition


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group condition fitness t score  
carbon source D,L-Malic Acid (C) -0.8 -1.5 compare
D-Galactose (C) -0.7 -1.4 compare
D-Galactose (C) -1.5 -2.2 compare
D-Glucose (C) -0.8 -1.4 compare
D-Glucose (C) -1.4 -2.4 compare
D-Glucose (C) -1.3 -2.2 compare
L-Alanine (C) -1.6 -1.9 compare
L-Alanine (C) -1.7 -2.3 compare
L-Aspartic Acid (C) -0.5 -0.8 compare
L-Aspartic Acid (C) -0.0 -0.0 compare
L-Aspartic Acid (C) -1.9 -3.2 compare
L-Glutamic (C) -0.6 -0.8 compare
L-Glutamic (C) -0.2 -0.3 compare
L-Glutamic (C) -3.0 -2.9 compare
L-Glutamine (C) -0.8 -1.1 compare
L-Glutamine (C) -1.3 -2.8 compare
L-Glutamine (C) -1.5 -2.6 compare
pyruvate (C) -2.0 -2.3 compare
pyruvate (C) -0.9 -1.2 compare
succinate (C) -1.2 -1.1 compare
succinate (C) -2.0 -2.3 compare
Sucrose (C) -1.1 -1.0 compare
Sucrose (C) -2.7 -2.6 compare
cpg CPG +0.4 +2.4 compare
CPG +0.6 +3.3 compare
cpg no stress control CPG no stress control +0.6 +2.5 compare
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +0.6 +0.6 compare
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +0.1 +0.2 compare
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +1.0 +1.1 compare
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.1 +0.2 compare
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.3 +0.5 compare
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.7 +0.8 compare
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.4 +0.6 compare
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.1 +0.3 compare
Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -1.5 -0.8 compare
Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.8 -0.4 compare
Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.1 +0.0 compare
Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.6 +1.1 compare
Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.2 -0.4 compare
Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -1.0 -0.5 compare
Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.1 +0.2 compare
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.3 +0.5 compare
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.6 +1.0 compare
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 +0.1 compare
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 +0.1 compare
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.1 -0.1 compare
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.1 -0.1 compare
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.9 +1.5 compare
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.0 +0.0 compare
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.5 +1.9 compare
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.2 +0.9 compare
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.3 +1.4 compare
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.0 +0.2 compare
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.4 +1.8 compare
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 +1.0 compare
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.0 +0.2 compare
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 +0.8 compare
m63_quarter_strength M63_quarter_strength +0.6 +2.9 compare
M63_quarter_strength +0.2 +1.3 compare
M63_quarter_strength +0.4 +2.3 compare
smsa no antibiotic control SMSA no antibiotic control -0.1 -0.3 compare
SMSA no antibiotic control -1.0 -1.7 compare
stress SMSA with Ralstonia_antibiotic_mix -0.5 -1.4 compare
SMSA with Ralstonia_antibiotic_mix -2.1 -2.4 compare
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin -0.2 -0.7 compare
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin -1.3 -1.7 compare
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol -0.9 -2.8 compare
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol -2.5 -1.7 compare
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet -3.1 -3.0 compare
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -1.8 -3.7 compare
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -1.0 -1.3 compare
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin -1.0 -3.0 compare
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin -0.4 -0.7 compare
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin -0.9 -2.7 compare
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin -1.1 -1.7 compare
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol -0.1 -0.2 compare
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol -1.8 -2.0 compare
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet +0.1 +0.2 compare
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet -1.0 -1.4 compare
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet -0.3 -1.2 compare
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet -1.0 -1.9 compare
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride -2.8 -3.8 compare
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride -1.3 -0.9 compare
survival Treatment=Stationary_phase_water_1week; Collection=outgrowth_in_cpg +0.3 +1.5 compare
water survival rep A; Treatment=watercosm; Collection=direct; Time=180_days -0.9 -2.7 compare
water survival rep B; Treatment=watercosm; Collection=direct; Time=180_days -0.2 -0.6 compare
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.2 +0.5 compare
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.2 +1.0 compare
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.3 +1.4 compare
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.4 +1.6 compare
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.5 +1.1 compare
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.7 +2.0 compare
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -2.5 -6.3 compare
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -1.3 -2.7 compare
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.9 -1.8 compare
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.3 +0.8 compare
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.7 +2.5 compare
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days -0.1 -0.2 compare
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days -0.2 -0.6 compare
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days +0.2 +0.5 compare
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days +0.5 +1.1 compare
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days +0.0 +0.0 compare
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days +0.3 +1.3 compare
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days +0.3 +0.8 compare
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -1.8 -4.4 compare
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.7 -1.8 compare
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.7 -1.4 compare
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi -0.3 -1.4 compare
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi -3.1 -4.1 compare
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi +0.6 +1.3 compare