| group | condition | fitness | t score | |
|---|
| anaerobic | N2E2wt with N1B4m denitrifying repA | +0.1 | +0.4 | compare |
| N2E2wt with N1B4m denitrifying repA | -0.5 | -1.5 | compare |
| N2E2wt with N1B4m denitrifying repB | +0.1 | +0.3 | compare |
| Nitrate reduction | +0.4 | +1.6 | compare |
| Nitrate reduction | +0.4 | +1.3 | compare |
| Nitrate reduction | +0.4 | +2.0 | compare |
| carbon source | a-Ketoglutaric (C) | +0.1 | +0.3 | compare |
| a-Ketoglutaric (C) | +0.4 | +1.3 | compare |
| Carnitine Hydrochloride (C) | +0.8 | +2.5 | compare |
| casaminos (C) | +0.5 | +1.4 | compare |
| Cytidine (C) | +0.5 | +1.5 | compare |
| D-Alanine (C) | +0.7 | +2.3 | compare |
| D-Fructose (C) | -0.0 | -0.0 | compare |
| D-Fructose (C) | -0.3 | -1.0 | compare |
| D-Galactose (C) | -0.2 | -0.8 | compare |
| D-Galactose (C) | +0.2 | +0.6 | compare |
| D-Galacturonic Acid (C) | +0.8 | +2.4 | compare |
| D-Gluconic Acid (C) | +0.2 | +0.8 | compare |
| D-Gluconic Acid (C) | -0.0 | -0.2 | compare |
| D-Glucose (C) | +0.5 | +1.8 | compare |
| D-Glucose (C) | +0.1 | +0.5 | compare |
| D-Mannose (C) | +0.6 | +1.8 | compare |
| D-Ribose (C) | -0.0 | -0.2 | compare |
| D-Ribose (C) | +0.3 | +1.0 | compare |
| D-Trehalose (C) | +0.2 | +0.6 | compare |
| Glycerol (C) | +0.5 | +1.6 | compare |
| L-Alanine (C) | +0.5 | +1.6 | compare |
| L-Arabinose (C) | -0.1 | -0.3 | compare |
| L-Arabinose (C) | -0.2 | -0.7 | compare |
| L-Arginine (C) | +0.3 | +0.8 | compare |
| L-Asparagine (C) | +0.1 | +0.2 | compare |
| L-Citrulline (C) | +0.2 | +0.7 | compare |
| L-Glutamic (C) | +0.4 | +1.1 | compare |
| L-Glutamine (C) | +0.3 | +0.9 | compare |
| L-Histidine (C) | +0.2 | +0.5 | compare |
| L-Isoleucine (C) | +0.6 | +1.7 | compare |
| L-Leucine (C) | +0.0 | +0.0 | compare |
| L-Malic (C) | +0.3 | +0.9 | compare |
| L-Valine (C) | +0.3 | +1.0 | compare |
| m-Inositol (C) | +0.7 | +2.2 | compare |
| acetate (C) | -0.2 | -0.7 | compare |
| acetate (C) | +0.3 | +0.9 | compare |
| Putrescine (C) | +0.4 | +1.4 | compare |
| butyrate (C) | +0.6 | +1.8 | compare |
| D,L-Lactate (C) | +0.1 | +0.4 | compare |
| D,L-Lactate (C) | -0.2 | -0.7 | compare |
| D-Lactate (C) | +0.0 | +0.0 | compare |
| D-Lactate (C) | +0.5 | +1.7 | compare |
| Fumarate (C) | -0.3 | -0.9 | compare |
| Fumarate (C) | +0.2 | +0.8 | compare |
| L-Lactate (C) | -0.1 | -0.5 | compare |
| L-Lactate (C) | +0.0 | +0.1 | compare |
| octanoate (C) | +0.8 | +2.5 | compare |
| pyruvate (C) | +0.1 | +0.4 | compare |
| pyruvate (C) | +0.2 | +0.8 | compare |
| carbon source Sucrose 0.25mM | +0.8 | +1.9 | compare |
| carbon source Sucrose 0.25mM | +0.3 | +0.6 | compare |
| carbon source Sucrose 0.5mM | +0.3 | +1.1 | compare |
| carbon source Sucrose 1mM | -0.4 | -1.1 | compare |
| carbon source Sucrose 1mM | -0.8 | -1.7 | compare |
| carbon source Sucrose 5mM | -0.2 | -0.6 | compare |
| carbon source Sucrose 5mM | -0.1 | -0.3 | compare |
| carbon source Sucrose 20mM | +0.3 | +1.0 | compare |
| carbon source Sucrose 20mM | -0.2 | -1.0 | compare |
| Tween 20 (C) | +0.5 | +1.6 | compare |
| Uridine (C) | -0.1 | -0.3 | compare |
| denitrifying | Nitrate reduction, replicate A | -0.2 | -0.7 | compare |
| Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A | -0.7 | -1.9 | compare |
| Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1 | -0.2 | -0.8 | compare |
| Nitrate reduction, replicate B | -0.6 | -2.1 | compare |
| Nitrate reduction, replicate C | +1.0 | +3.0 | compare |
| Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 | +0.3 | +0.9 | compare |
| Nitrate reduction, replicate B t1 | +0.3 | +1.1 | compare |
| Nitrate reduction, replicate B t2 | +0.1 | +0.6 | compare |
| Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B | +0.6 | +2.4 | compare |
| Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A | +0.8 | +3.5 | compare |
| Nitrate reduction, replicate C t1 | -0.3 | -1.0 | compare |
| Nitrate reduction, replicate A t1 | -0.1 | -0.3 | compare |
| Nitrate reduction, replicate C t2 | -0.3 | -0.9 | compare |
| Nitrate reduction, replicate A t2 | -0.0 | -0.1 | compare |
| Nitrate reduction, replicate C t3 | -0.2 | -0.5 | compare |
| lb | LB | -0.0 | -0.0 | compare |
| LB | +0.1 | +0.4 | compare |
| LB | -0.3 | -1.1 | compare |
| LB | -0.1 | -0.3 | compare |
| LB | -0.3 | -1.0 | compare |
| LB | +0.1 | +0.2 | compare |
| LB | +0.9 | +2.7 | compare |
| nitrogen source | Adenine (N) | -0.0 | -0.1 | compare |
| Ammonium chloride (N) | -0.2 | -0.7 | compare |
| nitrogen source Ammonium chloride 20mM | +0.3 | +1.2 | compare |
| nitrogen source Ammonium chloride 20mM | -0.3 | -0.9 | compare |
| Carnitine Hydrochloride (N) | +0.6 | +1.9 | compare |
| Cytidine (N) | -0.8 | -2.2 | compare |
| Cytosine (N) | -0.6 | -2.0 | compare |
| D-Alanine (N) | +0.9 | +2.9 | compare |
| D-Glucosamine Hydrochloride (N) | +0.3 | +1.0 | compare |
| L-Arginine (N) | -0.1 | -0.4 | compare |
| L-Citrulline (N) | +0.5 | +1.6 | compare |
| L-Glutamic (N) | -0.0 | -0.0 | compare |
| L-Histidine (N) | +0.2 | +0.8 | compare |
| L-Isoleucine (N) | +0.2 | +0.6 | compare |
| L-Leucine (N) | +0.4 | +1.3 | compare |
| L-Lysine (N) | +0.6 | +3.2 | compare |
| L-Methionine (N) | +0.7 | +2.1 | compare |
| L-Serine (N) | -0.2 | -0.6 | compare |
| L-Valine (N) | +0.6 | +1.9 | compare |
| Putrescine (N) | +0.6 | +1.8 | compare |
| nitrogen source nitrate 5mM | -0.0 | -0.1 | compare |
| nitrogen source nitrate 5mM | -0.0 | -0.1 | compare |
| nitrate (N) | -0.7 | -2.2 | compare |
| nitrogen source nitrate 20mM | +0.1 | +0.2 | compare |
| nitrogen source nitrate 20mM | +0.4 | +1.8 | compare |
| nitrogen source nitrite 0.1mM | -0.5 | -1.5 | compare |
| nitrogen source nitrite 0.1mM | +0.8 | +2.3 | compare |
| nitrogen source nitrite 0.5mM | -0.2 | -0.5 | compare |
| nitrogen source nitrite 0.5mM | +0.4 | +1.4 | compare |
| nitrogen source nitrite 1mM | +0.4 | +1.8 | compare |
| nitrogen source nitrite 1mM | +0.1 | +0.4 | compare |
| Thymine (N) | -0.5 | -1.5 | compare |
| Uridine (N) | -0.0 | -0.1 | compare |
| nophagecontrol | Time16-nophage | -0.0 | -0.2 | compare |
| Time16-nophage | -0.0 | -0.2 | compare |
| Time16-nophage | -0.3 | -0.9 | compare |
| TIme6-nophage | -0.5 | -1.5 | compare |
| TIme6-nophage | -0.1 | -0.4 | compare |
| pH | Minimal media pH6 | -0.0 | -0.1 | compare |
| Minimal media pH7 | +0.2 | +1.1 | compare |
| Minimal media pH7 | +0.2 | +0.6 | compare |
| Minimal media pH8 | +0.0 | +0.2 | compare |
| Minimal media pH9 | +0.4 | +1.3 | compare |
| Minimal media pH9 | +0.2 | +0.7 | compare |
| phagefrs | Time16-FRS | +0.2 | +1.0 | compare |
| Time16-FRS | -0.1 | -0.6 | compare |
| Time16-FRS | -0.3 | -1.3 | compare |
| Time6-FRS | -0.2 | -0.8 | compare |
| Time6-FRS | +0.2 | +1.1 | compare |
| Time6-FRS | +0.2 | +0.7 | compare |
| stress | 1-ethyl-3-methylimidazolium chloride 80 mM | -0.5 | -1.8 | compare |
| 1-ethyl-3-methylimidazolium lysine 5 mM | -0.2 | -0.9 | compare |
| 5-Hydroxymethylfurfural 2.5 mM | -0.3 | -1.2 | compare |
| Aluminum chloride 2.5 mM | +0.5 | +1.7 | compare |
| Bacitracin 2 mg/ml | +0.0 | +0.2 | compare |
| Benzethonium chloride 0.0125 mM | +0.1 | +0.5 | compare |
| benzoic 0.58 mg/ml | -0.1 | -0.5 | compare |
| Carbenicillin 2 mg/ml | -0.3 | -1.3 | compare |
| Cephalothin 2.5 mg/ml | +0.4 | +1.3 | compare |
| Cholin acetate 10 mM | -0.1 | -0.5 | compare |
| Cholin acetate 20 mM | -0.0 | -0.2 | compare |
| Choline chloride 200 mM | -0.2 | -0.8 | compare |
| Choline Lysine 6 mM | -0.3 | -1.0 | compare |
| Cisplatin 0.006 mg/ml | -0.3 | -1.0 | compare |
| Cisplatin 0.006 mg/ml | -0.2 | -0.6 | compare |
| Cobalt chloride 0.3125 mM | +0.1 | +0.5 | compare |
| copper (II) chloride 2.5 mM | +0.2 | +0.6 | compare |
| copper (II) chloride 2.5 mM | +0.1 | +0.4 | compare |
| D-Cycloserine 0.1 mg/ml | -0.0 | -0.0 | compare |
| Dimethyl Sulfoxide 5 vol% | +0.7 | +2.0 | compare |
| Dimethyl Sulfoxide 6.5 vol% | +0.6 | +2.0 | compare |
| Doxycycline hyclate 0.0001 mg/ml | +0.4 | +1.2 | compare |
| Fusidic 0.0625 mg/ml | +0.3 | +0.9 | compare |
| Fusidic 0.125 mg/ml | +0.2 | +0.4 | compare |
| Gentamicin 0.001 mg/ml | -0.2 | -1.0 | compare |
| methylglyoxal 0.004 vol% | +0.0 | +0.0 | compare |
| methylglyoxal 0.008 vol% | -0.0 | -0.1 | compare |
| Nalidixic 0.004 mg/ml | +0.3 | +1.4 | compare |
| Paraquat dichloride 0.016 mg/mL | -0.3 | -0.9 | compare |
| Rifampicin 0.004 mg/ml | -0.1 | -0.2 | compare |
| Sisomicin 0.001 mg/ml | -0.6 | -1.8 | compare |
| acetate 20 mM | +0.1 | +0.3 | compare |
| Chloride 200 mM | -1.6 | -4.1 | compare |
| Chloride 300 mM | -0.5 | -1.8 | compare |
| Chlorite 1 mM | -0.0 | -0.1 | compare |
| sodium fluoride 12.5 mM | -0.1 | -0.2 | compare |
| sodium fluoride 12.5 mM | +0.0 | +0.1 | compare |
| nitrate 100 mM | -0.4 | -1.3 | compare |
| nitrite 10 mM | +0.0 | +0.1 | compare |
| nitrite 10 mM | +0.2 | +0.8 | compare |
| Spectinomycin 0.025 mg/ml | -0.3 | -1.1 | compare |
| Spectinomycin 0.05 mg/ml | -0.5 | -1.7 | compare |
| Tetracycline 0.0004 mg/ml | -0.3 | -1.3 | compare |
| Thallium(I) acetate 0.008 mg/ml | -0.3 | -1.1 | compare |
| Thallium(I) acetate 0.008 mg/ml | +0.2 | +0.7 | compare |
| survival | 4C survival; 24 hrs | +0.5 | +1.8 | compare |
| temperature | LB 10C | +0.1 | +0.4 | compare |
| LB 10C | -0.0 | -0.1 | compare |
| LB 20C | -0.1 | -0.4 | compare |
| LB 20C | -0.0 | -0.2 | compare |
| LB 30C | -0.1 | -0.3 | compare |
| LB 37C | +0.0 | +0.1 | compare |
| LB 37C | +0.1 | +0.4 | compare |