Chain length determinant protein
SEED: regulator of length of O-antigen component of lipopolysaccharide chains
KEGG: chain length determinant protein (polysaccharide antigen chain regulator)
Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)
Or see all 355 experiments or choose conditions
| group | condition | fitness | t score | |
|---|
| nitrogen source | D-Mannose (N) | -0.8 | -3.1 | compare |
| mixed community | 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_041 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct | -0.6 | -2.6 | compare |
| mixed community | 1X LB plate, Mixed culture; Enterobacter sp. TBS-079 (Tn7_Kan_Lux) 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct | -0.6 | -2.9 | compare |
| motility; outer cut | Motility test in 1X LB; 1 day; outer cut; 0.3% agar | -0.6 | -3.1 | compare |
| nitrogen source | L-Glutamic (N) | +0.6 | +2.8 | compare |
| mixed community | RCH2_defined_glucose plate, 1:1 coculture with Bacillus_zanthoxyli_TBS_055 | +0.6 | +1.9 | compare |
| mixed community | RCH2_defined_glucose plate, 1:1 coculture with Enterobacter_ludwigii_PH2 | +0.6 | +1.7 | compare |
| supernatant | mutant library grown in Supernatant; Achromobacter sp. TBS_048 grown in R2A | +0.6 | +4.5 | compare |
| supernatant | mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A | +0.6 | +4.0 | compare |
| mixed community | M9 plate, 1:1 coculture with Rhodococcus aetherivorans MH2 | +0.6 | +1.7 | compare |
| carbon source | L-Lactate (C) | +0.7 | +2.5 | compare |
| mixed community | 1X LB plate, 1:1 coculture with Burkholderia territorio SO8-2 | +0.7 | +3.4 | compare |
| in planta | Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 | +0.8 | +4.4 | compare |
| mixed community | TSB plate, 1:1 coculture with Bacillus_pumilus_TBS_103 | +0.9 | +3.9 | compare |
| mixed community | 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct | +1.0 | +4.6 | compare |
| mixed community | LB plate, 1:1 coculture with Chryseobacterium_proteolyticum_TBS_027 | +1.1 | +3.3 | compare |
| mixed community | 0.1X LB plate, Mixed culture; Chryseobacterium geocarphospharae CO6 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct | +1.2 | +6.7 | compare |
| mixed community | M9 plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct | +1.3 | +2.5 | compare |
| in planta | Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 | +1.4 | +8.5 | compare |
| in planta | Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 | +1.6 | +5.1 | compare |