Periplasmic oligopeptide-binding protein
SEED: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
KEGG: peptide/nickel transport system substrate-binding protein
Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)
Or see all 355 experiments or choose conditions
| group | condition | fitness | t score | |
|---|
| mixed community | 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 | -1.4 | -8.4 | compare |
| supernatant | mutant library grown in Supernatant; Pseudomonas frederiksbergensis TBS_004 grown in LB | -0.9 | -7.2 | compare |
| in planta | Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 | -0.9 | -4.7 | compare |
| in planta | Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 | -0.9 | -6.5 | compare |
| mixed community | 1X LB plate, 1:1 coculture with Microbacterium atlanticum SAI_030 | -0.8 | -5.1 | compare |
| mixed community | TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 | -0.8 | -4.8 | compare |
| mixed community | 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct | -0.8 | -4.5 | compare |
| mixed community | 1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 | -0.8 | -5.0 | compare |
| mixed community | M9 plate, 1:1 coculture with Microbacterium atlanticum SAI_030 | -0.8 | -5.3 | compare |
| in planta | Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 | -0.8 | -4.4 | compare |
| mixed community | M9 plate, 1:1 coculture with Brevibacillus agri TBS_043 | -0.7 | -4.4 | compare |
| mixed community | TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 | -0.7 | -4.5 | compare |
| supernatant | mutant library grown in Supernatant; Brevibacillus agri TBS_043 grown in LB | -0.6 | -5.4 | compare |
| mixed community | TSB plate, 1:1 coculture with AMD2732 | -0.6 | -4.2 | compare |
| mixed community | TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 | -0.6 | -3.6 | compare |
| mixed community | 0.1X LB plate, 1:1 coculture with Bacillus megaterium TBS_037 | -0.6 | -3.9 | compare |
| mixed community | TSB plate, 1:1 coculture with Enterobacter_ludwigii_PH2 | -0.6 | -3.2 | compare |
| mixed community | 0.1X LB plate, 1:1 coculture with Paenibacillus lautus TBS_090 | -0.6 | -3.2 | compare |
| mixed community | M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 | -0.6 | -3.8 | compare |
| mixed community | 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct | +0.9 | +2.4 | compare |