Fitness data for LRK54_RS13750 in Rhodanobacter denitrificans FW104-10B01

tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
SEED: tRNA-i(6)A37 methylthiotransferase
KEGG: bifunctional enzyme involved in thiolation and methylation of tRNA

All 333 fitness values, sorted by group and condition


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group condition fitness t score  
anaerobic Anaerobic, acetate donor; nitrate electron acceptor -0.4 -2.8 compare
Anaerobic, acetate donor; nitrate electron acceptor -0.5 -3.2 compare
Anaerobic, acetate donor; nitrate and iron electron acceptors -0.2 -1.5 compare
Anaerobic, acetate donor; nitrate and iron electron acceptors -0.6 -3.3 compare
biofilm assay; biofilm sample biofilm; Day1; NLDM; -0.1 -0.4 compare
biofilm; Day1; NLDM; -0.3 -1.5 compare
biofilm; Day1; NLDM; -0.2 -1.1 compare
biofilm; Day2; NLDM; -0.1 -0.7 compare
biofilm; Day2; NLDM; +0.0 +0.1 compare
biofilm; Day2; NLDM; -0.3 -1.4 compare
biofilm; Day2; NLDM; Aluminum chloride 1mM +0.0 +0.3 compare
biofilm; Day2; NLDM; Aluminum chloride 1mM -0.3 -1.3 compare
biofilm; Day2; NLDM; Aluminum chloride 1mM +0.1 +0.6 compare
biofilm; Day2; NLDM; Aluminum chloride 1mM -0.3 -1.2 compare
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.8 -3.3 compare
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.2 -0.9 compare
biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.1 +0.4 compare
biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.0 -0.0 compare
biofilm assay; planktonic sample planktonic; Day1; NLDM; -0.4 -2.0 compare
planktonic; Day1; NLDM; -0.2 -1.1 compare
planktonic; Day1; NLDM; -0.3 -1.7 compare
planktonic; Day2; NLDM; -0.2 -1.6 compare
planktonic; Day2; NLDM; +0.0 +0.1 compare
planktonic; Day2; NLDM; -0.3 -1.8 compare
Planktonic; Day2; SGW; pH7 +0.1 +0.7 compare
Planktonic; Day4; SGW; pH7 +0.1 +0.4 compare
planktonic; Day2; NLDM; Aluminum chloride 1mM +0.1 +0.4 compare
planktonic; Day2; NLDM; Aluminum chloride 1mM -0.1 -0.5 compare
planktonic; Day2; NLDM; Aluminum chloride 1mM +0.0 +0.1 compare
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM +0.2 +1.1 compare
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.1 -0.9 compare
planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM -0.1 -0.4 compare
carbon source a-Cyclodextrin 20 mM -0.3 -2.1 compare
a-Cyclodextrin 20 mM -0.3 -1.3 compare
casaminos 2 mg/mL -0.3 -2.2 compare
casaminos 2 mg/mL -0.3 -2.2 compare
D-Glucosamine Hydrochloride 20 mM -0.2 -1.9 compare
D-Glucosamine Hydrochloride 20 mM -0.1 -1.1 compare
D-Glucose 20 mM -0.2 -1.3 compare
D-Glucose 20 mM +0.0 +0.3 compare
D-Glucose (C); 20C +0.0 +0.2 compare
D-Glucose (C); 30C -0.2 -1.3 compare
D-Glucose (C) and 20 AA mix; 20C -0.2 -1.1 compare
D-Glucose (C) and 20 AA mix; 30C -0.1 -0.9 compare
D-Glucose-6-Phosphate 20 mM -0.1 -0.9 compare
D-Glucose-6-Phosphate 20 mM -0.0 -0.0 compare
D-Maltose 20 mM -0.2 -1.9 compare
D-Maltose 20 mM -0.0 -0.1 compare
D-Raffinose 20 mM -0.3 -2.2 compare
D-Raffinose 20 mM -0.3 -2.3 compare
D-Trehalose 20 mM -0.3 -2.1 compare
D-Trehalose 20 mM -0.1 -0.8 compare
Gly-Glu 20 mM -0.3 -1.9 compare
Gly-Glu 20 mM -0.1 -0.8 compare
L-Glutamic 20 mM -0.2 -1.4 compare
L-Glutamic 20 mM -0.1 -0.8 compare
NAG 20 mM -0.2 -1.2 compare
NAG 20 mM -0.1 -0.6 compare
acetate 20 mM -0.1 -0.8 compare
acetate 20 mM +0.0 +0.1 compare
pyruvate 20 mM -0.2 -1.5 compare
pyruvate 20 mM -0.2 -1.6 compare
nldm control NLDM_defined; midlog -0.2 -1.7 compare
NLDM_defined; midlog -0.2 -1.5 compare
NLDM_defined; midlog -0.2 -1.1 compare
NLDM_defined; stationary -0.2 -1.3 compare
NLDM_defined; stationary -0.0 -0.1 compare
NLDM_defined; stationary -0.1 -1.0 compare
nldm low iron NLDM_defined low iron; midlog -0.1 -0.9 compare
NLDM_defined low iron; midlog +0.1 +0.8 compare
NLDM_defined low iron; midlog -0.1 -0.6 compare
NLDM_defined low iron; stationary -0.2 -1.4 compare
NLDM_defined low iron; stationary -0.1 -0.6 compare
NLDM_defined low iron; stationary -0.4 -3.1 compare
nldm low p NLDM_defined low phosphorus; midlog -0.2 -1.2 compare
NLDM_defined low phosphorus; midlog -0.2 -1.5 compare
NLDM_defined low phosphorus; midlog -0.2 -1.2 compare
NLDM_defined low phosphorus; stationary -0.1 -1.0 compare
NLDM_defined low phosphorus; stationary -0.2 -1.4 compare
NLDM_defined low phosphorus; stationary -0.0 -0.0 compare
no phage control No phage control -0.3 -1.4 compare
No phage control -0.0 -0.1 compare
no stress control no stress control -0.2 -1.1 compare
no stress control +0.2 +1.2 compare
no stress control -0.1 -0.4 compare
no stress control -0.1 -0.9 compare
no stress control -0.0 -0.2 compare
no stress control -0.0 -0.0 compare
no stress control -0.1 -0.8 compare
no stress control -0.0 -0.1 compare
no stress control +0.0 +0.1 compare
pH R2A pH5 -0.1 -0.4 compare
R2A pH5 -0.1 -0.7 compare
R2A pH5 -0.1 -0.9 compare
R2A pH5 -0.1 -0.4 compare
R2A pH6 -0.1 -0.8 compare
R2A pH6 -0.2 -1.8 compare
R2A pH6 -0.1 -0.9 compare
R2A pH6 -0.2 -1.2 compare
R2A pH7 -0.1 -0.9 compare
R2A pH7 -0.1 -1.0 compare
R2A pH7 -0.4 -2.7 compare
R2A pH7 -0.3 -1.9 compare
R2A_PIPES pH 4 -0.2 -1.4 compare
R2A_PIPES pH 4 -0.1 -1.0 compare
R2A_PIPES pH 4.25 -0.0 -0.2 compare
R2A_PIPES pH 4.25 -0.1 -0.7 compare
phage 1A-T1 -0.4 -1.7 compare
1A-T2 -0.3 -1.5 compare
1B-T1 -0.1 -0.5 compare
1C-T1 -0.6 -2.5 compare
1C-T2 -0.2 -1.0 compare
1D-T2 -0.4 -1.7 compare
1E-T1 -0.1 -0.2 compare
1E-T2 -0.4 -1.6 compare
2A-T1 -0.1 -0.7 compare
2A-T2 -0.2 -0.9 compare
2B-T1 -0.4 -1.7 compare
2B-T2 -0.4 -1.9 compare
2E-T1 -0.4 -1.8 compare
2E-T2 -0.1 -0.6 compare
2F-T1 -0.1 -0.3 compare
2F-T2 -0.3 -1.4 compare
3B-T1 -0.4 -1.9 compare
3C-T2 -0.3 -1.3 compare
3E-T1 -0.5 -2.1 compare
3E-T2 -0.1 -0.4 compare
4B-T1 -0.3 -1.1 compare
4B-T2 +0.0 +0.1 compare
4E-T1 -0.5 -1.8 compare
4E-T2 -0.2 -0.6 compare
S3-T1 -0.2 -0.8 compare
S3-T2 -0.5 -2.1 compare
S5-T1 -0.4 -2.0 compare
S5-T2 -0.1 -0.4 compare
SA-T1 -0.3 -1.5 compare
SA-T2 -0.4 -1.7 compare
phage 31.1 -0.2 -0.8 compare
r2a_control R2A control -0.4 -2.9 compare
R2A control -0.4 -3.1 compare
R2A control -0.5 -3.8 compare
R2A control -0.4 -3.1 compare
R2A control -0.3 -2.2 compare
R2A control -0.4 -3.1 compare
R2A control -0.4 -3.2 compare
R2A control -0.2 -1.8 compare
R2A control -0.5 -3.7 compare
R2A control -0.3 -2.5 compare
R2A control -0.3 -2.2 compare
R2A control -0.4 -3.4 compare
R2A control -0.4 -3.2 compare
R2A control -0.4 -3.0 compare
R2A control -0.3 -2.9 compare
R2A control -0.3 -2.1 compare
R2A control -0.3 -2.5 compare
R2A control -0.4 -3.1 compare
R2A control -0.2 -1.3 compare
R2A control -0.3 -1.8 compare
R2A control -0.1 -1.1 compare
R2A control -0.1 -0.8 compare
R2A control -0.0 -0.3 compare
R2A control -0.3 -1.9 compare
R2A control -0.0 -0.2 compare
R2A control -0.2 -1.7 compare
R2A control +0.0 +0.1 compare
R2A control -0.0 -0.0 compare
R2A control -0.1 -0.9 compare
R2A control -0.1 -1.1 compare
R2A control +0.0 +0.1 compare
R2A control -0.2 -1.1 compare
R2A control -0.3 -2.3 compare
R2A control -0.3 -2.0 compare
R2A control -0.2 -1.3 compare
R2A control -0.1 -0.5 compare
R2A control -0.1 -0.7 compare
R2A control -0.1 -1.1 compare
R2A control -0.6 -4.0 compare
R2A control -0.7 -5.0 compare
R2A control -0.6 -3.7 compare
R2A control -0.5 -3.3 compare
R2A control -0.4 -2.5 compare
R2A control -0.6 -3.9 compare
R2A control -0.5 -3.6 compare
R2A control -0.4 -2.9 compare
R2A control -0.6 -3.9 compare
R2A control -0.6 -3.6 compare
R2A control -0.4 -2.7 compare
R2A control -0.5 -3.7 compare
stress R2A_PIPES with Aluminum chloride 1.125 mM +0.3 +2.0 compare
R2A_PIPES with Aluminum chloride 1.125 mM +0.2 +1.3 compare
R2A with Aluminum chloride 1.5625 mM -0.1 -0.9 compare
R2A with Aluminum chloride 1.5625 mM -0.1 -0.8 compare
R2A with Aluminum chloride 1.5625 mM +0.0 +0.2 compare
R2A with Aluminum chloride 1.5625 mM -0.1 -0.4 compare
R2A with Aluminum chloride 3.125 mM +0.3 +2.4 compare
R2A with Aluminum chloride 3.125 mM +0.3 +2.5 compare
R2A with Aluminum chloride 3.125 mM -0.1 -1.0 compare
R2A with Aluminum chloride 3.125 mM -0.1 -0.5 compare
R2A with Aluminum chloride 6.25 mM -0.1 -0.4 compare
R2A with Aluminum chloride 6.25 mM -0.1 -0.4 compare
R2A with ammonium iron(II) sulfate 2.5 mM -0.5 -3.3 compare
R2A with ammonium iron(II) sulfate 2.5 mM -0.5 -3.4 compare
R2A with Barium chloride 1.25 mM -0.4 -2.4 compare
R2A with Barium chloride 1.25 mM -0.3 -1.8 compare
R2A with beryllium sulfate tetrahydrate 1.953125 mM -0.8 -5.4 compare
R2A with beryllium sulfate tetrahydrate 1.953125 mM -0.8 -5.7 compare
R2A with bismuth(III) chloride 0.03125 mM -1.6 -7.0 compare
R2A with bismuth(III) chloride 0.03125 mM -0.7 -4.5 compare
R2A_PIPES with Cadmium chloride 16 uM +0.1 +0.9 compare
R2A_PIPES with Cadmium chloride 16 uM -0.2 -1.4 compare
R2A with Cadmium chloride hemipentahydrate 0.01953125 mM -0.3 -2.1 compare
R2A with Cadmium chloride hemipentahydrate 0.01953125 mM -0.2 -1.3 compare
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM -0.4 -3.2 compare
R2A with Cadmium chloride hemipentahydrate 0.0390625 mM -0.3 -2.5 compare
R2A with Cadmium chloride hemipentahydrate 0.0625 mM -0.1 -0.4 compare
R2A with Calcium chloride 125 mM -0.6 -3.8 compare
R2A with Calcium chloride 125 mM -0.1 -0.6 compare
R2A with Calcium chloride 250 mM -0.1 -0.8 compare
R2A with Calcium chloride 250 mM -0.3 -1.9 compare
R2A with Cesium chloride 3.90625 mM -0.7 -4.2 compare
R2A with Cesium chloride 3.90625 mM -0.8 -4.8 compare
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM -0.3 -2.3 compare
R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM -0.2 -1.4 compare
R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM +0.6 +3.7 compare
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM -0.5 -3.5 compare
R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM -0.1 -0.9 compare
R2A with Cobalt chloride 0.0390625 mM -0.1 -0.7 compare
R2A with Cobalt chloride 0.0390625 mM -0.2 -1.2 compare
R2A with Cobalt chloride 0.078125 mM -0.2 -1.1 compare
R2A with Cobalt chloride 0.078125 mM -0.2 -1.8 compare
R2A with Cobalt chloride 0.15625 mM +0.1 +0.7 compare
R2A with Cobalt chloride 0.15625 mM +0.2 +0.8 compare
R2A_PIPES with Cobalt chloride 256 uM -0.5 -3.4 compare
R2A_PIPES with Cobalt chloride 256 uM -0.3 -2.0 compare
R2A with copper (II) chloride 0.15625 mM -0.2 -1.2 compare
R2A with copper (II) chloride 0.15625 mM -0.1 -0.9 compare
R2A with copper (II) chloride 0.3125 mM -0.4 -2.4 compare
R2A with copper (II) chloride 0.3125 mM +0.0 +0.2 compare
R2A with Ferric chloride 1.5625 mM -0.9 -5.6 compare
R2A with FW104 filtrate 0.5 X -0.0 -0.3 compare
R2A with FW104 filtrate 0.5 X -0.1 -1.1 compare
R2A with FW104 filtrate 0.5 X -0.4 -2.4 compare
R2A with FW104 filtrate 0.5 X -0.1 -0.7 compare
R2A with Gallium(III)chloride 0.78125 mM -0.3 -2.1 compare
R2A with Gallium(III)chloride 0.78125 mM -0.5 -3.3 compare
R2A with lead(II) chloride 0.625 mM -0.5 -3.4 compare
R2A with lead(II) chloride 0.625 mM -0.6 -4.2 compare
R2A with lithium chloride 15.625 mM -0.4 -2.7 compare
R2A with lithium chloride 15.625 mM -0.5 -3.2 compare
R2A with Magnesium sulfate 3.90625 mM -0.3 -1.8 compare
R2A with Magnesium sulfate 3.90625 mM -0.7 -4.7 compare
R2A with Manganese (II) chloride tetrahydrate 0.15625 mM -0.4 -3.2 compare
R2A with Manganese (II) chloride tetrahydrate 0.15625 mM -0.3 -2.7 compare
R2A with Manganese (II) chloride tetrahydrate 0.3125 mM -0.3 -2.2 compare
R2A with Manganese (II) chloride tetrahydrate 0.3125 mM -0.4 -2.7 compare
R2A with Manganese (II) chloride tetrahydrate 0.625 mM -0.3 -2.3 compare
R2A with Manganese (II) chloride tetrahydrate 0.625 mM -0.4 -3.2 compare
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.2 -1.5 compare
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.7 -2.8 compare
R2A with Manganese (II) chloride tetrahydrate 1.25 mM -0.3 -2.5 compare
R2A with Manganese (II) chloride tetrahydrate 1.25 mM -0.4 -3.2 compare
R2A with Manganese (II) chloride tetrahydrate 2.5 mM -0.4 -2.8 compare
R2A with Manganese (II) chloride tetrahydrate 2.5 mM -0.4 -3.1 compare
R2A with Manganese (II) chloride tetrahydrate 3.125 mM -0.0 -0.2 compare
R2A with Manganese (II) chloride tetrahydrate 3.125 mM -0.1 -0.5 compare
R2A with Manganese (II) chloride tetrahydrate 6.25 mM -0.0 -0.1 compare
R2A with Manganese (II) chloride tetrahydrate 6.25 mM -0.0 -0.2 compare
R2A with mercury (II) chloride 0.009765625 mM -0.5 -3.2 compare
R2A_PIPES with Metal_ion_mix_sitestressplate 0.25 x -0.1 -1.0 compare
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x +0.2 +1.4 compare
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x -0.0 -0.1 compare
R2A with Nickel (II) chloride 0.15625 mM -0.1 -0.6 compare
R2A with Nickel (II) chloride 0.15625 mM +0.0 +0.2 compare
R2A with Nickel (II) chloride 0.3125 mM -1.4 -7.0 compare
R2A with Nickel (II) chloride 0.3125 mM -1.0 -5.8 compare
R2A with Nickel (II) chloride 0.3125 mM -0.1 -0.7 compare
R2A with Nickel (II) chloride 0.3125 mM -0.2 -1.8 compare
R2A with Nickel (II) chloride 0.625 mM -0.7 -4.7 compare
R2A with Nickel (II) chloride 0.625 mM -0.5 -3.2 compare
R2A_PIPES with Nickel (II) chloride 424 uM +0.1 +0.4 compare
R2A with Other_metal_mix 1 X -0.0 -0.2 compare
R2A with Other_metal_mix 1 X -0.1 -0.8 compare
R2A with Other_metal_mix 1 X +0.1 +0.9 compare
R2A with Other_metal_mix 1 X +0.1 +0.5 compare
R2A with Chloride 250 mM -0.6 -4.2 compare
R2A with Chloride 250 mM -0.4 -2.7 compare
R2A with chromate 0.0048828125 mM -0.2 -0.8 compare
R2A with chromate 0.0048828125 mM -0.3 -1.1 compare
R2A with Selective_ion_mix_1 1 X -0.1 -0.4 compare
R2A with Selective_ion_mix_1 1 X +0.1 +0.4 compare
R2A with Selective_ion_mix_1 1 X +0.2 +1.2 compare
R2A with Selective_ion_mix_1 1 X -0.0 -0.2 compare
R2A with Selective_ion_mix_1 1 X -0.1 -0.7 compare
R2A with Selective_ion_mix_1 1 X -0.0 -0.0 compare
R2A with silver chloride 1 mM -0.9 -4.9 compare
R2A with silver chloride 1 mM -0.7 -4.0 compare
R2A with arsenate 15.625 mM -0.1 -0.9 compare
R2A with arsenate 15.625 mM -0.1 -0.9 compare
R2A with arsenate 31.25 mM -0.2 -1.0 compare
R2A with arsenate 31.25 mM -0.2 -1.1 compare
R2A with sodium bromide 250 mM -0.7 -4.8 compare
R2A with sodium bromide 250 mM -0.4 -2.6 compare
R2A with Chloride 250 mM -0.5 -3.3 compare
R2A with Chloride 250 mM -0.6 -3.7 compare
R2A with m-arsenite 0.0390625 mM -0.2 -1.3 compare
R2A with m-arsenite 0.0390625 mM -0.2 -1.3 compare
R2A with m-arsenite 0.078125 mM -0.3 -1.9 compare
R2A with m-arsenite 0.078125 mM -0.2 -1.4 compare
R2A with nitrate 125 mM -0.3 -2.2 compare
R2A with nitrate 125 mM -0.2 -1.1 compare
R2A with nitrate 250 mM -0.4 -2.6 compare
R2A with nitrate 250 mM -0.3 -2.0 compare
R2A with nitrite 25 mM +0.1 +0.8 compare
R2A with nitrite 25 mM -0.2 -1.5 compare
R2A with nitrite 50 mM -0.3 -1.9 compare
R2A with nitrite 50 mM -0.4 -2.6 compare
R2A with selenate 31.25 mM -0.4 -2.9 compare
R2A with selenate 31.25 mM -0.5 -3.6 compare
R2A with sulfate 250 mM -0.5 -3.1 compare
R2A with sulfate 250 mM -0.4 -2.9 compare
R2A with SpecU metal mix 1 X -0.1 -0.4 compare
R2A with SpecU metal mix 1 X -0.2 -1.7 compare
R2A with Strontium chloride 3.90625 mM -0.5 -3.3 compare
R2A with Strontium chloride 3.90625 mM -0.2 -1.4 compare
R2A with Uranyl acetate 2.5 mM -0.6 -3.8 compare
R2A with Uranyl acetate 2.5 mM -0.5 -3.4 compare
R2A with Zinc chloride 0.3125 mM -0.2 -1.5 compare
R2A with Zinc chloride 0.3125 mM -0.1 -0.6 compare
R2A with Zinc chloride 0.625 mM -0.1 -0.5 compare
R2A with Zinc chloride 0.625 mM -0.0 -0.2 compare
R2A with Zinc chloride 0.625 mM -0.0 -0.4 compare
R2A_PIPES with Zinc chloride 640 uM -0.1 -0.4 compare
time0_washed Time0_washed +0.1 +0.7 compare