Fitness data for LRK54_RS06595 in Rhodanobacter denitrificans FW104-10B01

sigma-54 dependent transcriptional regulator

All 314 fitness values, sorted by group and condition

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group	condition	fitness	t score
anaerobic	Anaerobic, acetate donor; nitrate electron acceptor	-0.0	-0.1	compare
	Anaerobic, acetate donor; nitrate electron acceptor	+0.1	+0.4	compare
	Anaerobic, acetate donor; nitrate and iron electron acceptors	-0.0	-0.1	compare
	Anaerobic, acetate donor; nitrate and iron electron acceptors	-0.0	-0.3	compare
biofilm assay; biofilm sample	biofilm; Day1; NLDM;	+0.0	+0.3	compare
	biofilm; Day1; NLDM;	-0.1	-0.7	compare
	biofilm; Day1; NLDM;	-0.1	-0.5	compare
	biofilm; Day2; NLDM;	-0.1	-0.7	compare
	biofilm; Day2; NLDM;	-0.1	-0.6	compare
	biofilm; Day2; NLDM;	+0.0	+0.2	compare
	biofilm; Day2; NLDM; Aluminum chloride 1mM	+0.0	+0.1	compare
	biofilm; Day2; NLDM; Aluminum chloride 1mM	+0.1	+0.8	compare
	biofilm; Day2; NLDM; Aluminum chloride 1mM	+0.1	+0.6	compare
	biofilm; Day2; NLDM; Aluminum chloride 1mM	-0.4	-2.4	compare
	biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM	+0.1	+0.5	compare
	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM	-0.0	-0.2	compare
	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM	+0.2	+1.2	compare
	biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM	-0.1	-0.8	compare
biofilm assay; planktonic sample	planktonic; Day1; NLDM;	-0.0	-0.2	compare
	planktonic; Day1; NLDM;	-0.0	-0.2	compare
	planktonic; Day1; NLDM;	+0.1	+0.9	compare
	planktonic; Day2; NLDM;	-0.0	-0.4	compare
	planktonic; Day2; NLDM;	+0.2	+1.3	compare
	planktonic; Day2; NLDM;	-0.0	-0.2	compare
	Planktonic; Day2; SGW; pH7	+0.3	+1.5	compare
	Planktonic; Day4; SGW; pH7	+0.3	+2.0	compare
	planktonic; Day2; NLDM; Aluminum chloride 1mM	-0.3	-1.7	compare
	planktonic; Day2; NLDM; Aluminum chloride 1mM	+0.2	+1.1	compare
	planktonic; Day2; NLDM; Aluminum chloride 1mM	+0.1	+0.4	compare
	planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM	+0.1	+0.9	compare
	planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM	-0.0	-0.0	compare
	planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM	-0.0	-0.2	compare
carbon source	a-Cyclodextrin 20 mM	-0.0	-0.2	compare
	a-Cyclodextrin 20 mM	+0.1	+0.7	compare
	casaminos 2 mg/mL	+0.0	+0.0	compare
	casaminos 2 mg/mL	+0.0	+0.4	compare
	D-Glucosamine Hydrochloride 20 mM	+0.2	+1.8	compare
	D-Glucosamine Hydrochloride 20 mM	+0.1	+0.9	compare
	D-Glucose 20 mM	+0.0	+0.3	compare
	D-Glucose 20 mM	+0.1	+0.5	compare
	D-Glucose (C); 20C	+0.1	+0.4	compare
	D-Glucose (C); 30C	-0.1	-0.8	compare
	D-Glucose (C) and 20 AA mix; 20C	+0.1	+0.5	compare
	D-Glucose (C) and 20 AA mix; 30C	+0.1	+0.5	compare
	D-Glucose-6-Phosphate 20 mM	+0.1	+0.7	compare
	D-Glucose-6-Phosphate 20 mM	+0.3	+2.2	compare
	D-Maltose 20 mM	-0.0	-0.1	compare
	D-Maltose 20 mM	+0.1	+0.7	compare
	D-Raffinose 20 mM	-0.1	-0.5	compare
	D-Raffinose 20 mM	+0.1	+0.7	compare
	D-Trehalose 20 mM	-0.0	-0.1	compare
	D-Trehalose 20 mM	+0.1	+1.0	compare
	Gly-Glu 20 mM	+0.1	+0.7	compare
	Gly-Glu 20 mM	-0.0	-0.2	compare
	L-Glutamic 20 mM	+0.0	+0.4	compare
	L-Glutamic 20 mM	-0.0	-0.1	compare
	NAG 20 mM	+0.0	+0.4	compare
	NAG 20 mM	+0.0	+0.2	compare
	acetate 20 mM	-0.0	-0.3	compare
	acetate 20 mM	+0.1	+0.7	compare
	pyruvate 20 mM	+0.0	+0.3	compare
	pyruvate 20 mM	+0.1	+0.7	compare
no phage control	No phage control	-0.2	-1.2	compare
	No phage control	+0.0	+0.3	compare
no stress control	no stress control	-0.0	-0.3	compare
	no stress control	+0.1	+0.8	compare
	no stress control	-0.0	-0.3	compare
	no stress control	+0.0	+0.1	compare
	no stress control	-0.1	-0.5	compare
	no stress control	-0.0	-0.1	compare
	no stress control	-0.1	-0.5	compare
	no stress control	+0.1	+1.0	compare
	no stress control	-0.1	-0.8	compare
pH	R2A pH5	-0.0	-0.3	compare
	R2A pH5	-0.2	-1.4	compare
	R2A pH5	+0.1	+0.6	compare
	R2A pH5	-0.2	-1.3	compare
	R2A pH6	-0.0	-0.3	compare
	R2A pH6	+0.0	+0.2	compare
	R2A pH6	-0.1	-0.7	compare
	R2A pH6	-0.1	-0.5	compare
	R2A pH7	-0.1	-0.4	compare
	R2A pH7	-0.0	-0.4	compare
	R2A pH7	+0.0	+0.2	compare
	R2A pH7	-0.0	-0.0	compare
	R2A_PIPES pH 4	+0.0	+0.4	compare
	R2A_PIPES pH 4	-0.0	-0.0	compare
	R2A_PIPES pH 4.25	-0.3	-2.2	compare
	R2A_PIPES pH 4.25	-0.1	-0.9	compare
phage	1A-T1	+0.0	+0.1	compare
	1A-T2	-0.1	-0.9	compare
	1B-T1	-0.2	-1.3	compare
	1C-T1	-0.3	-2.1	compare
	1C-T2	+0.2	+1.5	compare
	1D-T2	-0.4	-2.8	compare
	1E-T1	-0.0	-0.0	compare
	1E-T2	+0.1	+1.1	compare
	2A-T1	-0.3	-2.3	compare
	2A-T2	-0.3	-1.9	compare
	2B-T1	-0.3	-2.0	compare
	2B-T2	-0.0	-0.3	compare
	2E-T1	-0.1	-0.6	compare
	2E-T2	-0.0	-0.1	compare
	2F-T1	-0.1	-0.6	compare
	2F-T2	-0.2	-1.4	compare
	3B-T1	-0.2	-1.1	compare
	3C-T2	-0.1	-1.0	compare
	3E-T1	-0.1	-0.4	compare
	3E-T2	-0.3	-1.8	compare
	4B-T1	-0.4	-2.3	compare
	4B-T2	-0.2	-1.2	compare
	4E-T1	-0.3	-1.6	compare
	4E-T2	-0.4	-2.6	compare
	S3-T1	-0.3	-2.0	compare
	S3-T2	-0.3	-1.8	compare
	S5-T1	-0.0	-0.3	compare
	S5-T2	-0.0	-0.2	compare
	SA-T1	-0.0	-0.0	compare
	SA-T2	-0.2	-1.7	compare
	phage 31.1	+0.0	+0.1	compare
r2a_control	R2A control	+0.0	+0.2	compare
	R2A control	-0.0	-0.1	compare
	R2A control	+0.0	+0.2	compare
	R2A control	-0.0	-0.0	compare
	R2A control	-0.0	-0.3	compare
	R2A control	-0.0	-0.3	compare
	R2A control	+0.0	+0.2	compare
	R2A control	+0.0	+0.2	compare
	R2A control	-0.0	-0.2	compare
	R2A control	+0.0	+0.2	compare
	R2A control	+0.1	+0.8	compare
	R2A control	-0.1	-0.7	compare
	R2A control	-0.0	-0.1	compare
	R2A control	-0.0	-0.4	compare
	R2A control	+0.0	+0.2	compare
	R2A control	-0.0	-0.2	compare
	R2A control	+0.0	+0.2	compare
	R2A control	+0.0	+0.4	compare
	R2A control	+0.1	+0.6	compare
	R2A control	+0.0	+0.4	compare
	R2A control	-0.1	-0.9	compare
	R2A control	-0.1	-1.2	compare
	R2A control	-0.1	-0.5	compare
	R2A control	+0.0	+0.2	compare
	R2A control	-0.1	-0.7	compare
	R2A control	+0.0	+0.3	compare
	R2A control	-0.1	-0.5	compare
	R2A control	-0.2	-1.5	compare
	R2A control	+0.1	+0.5	compare
	R2A control	-0.1	-0.6	compare
	R2A control	-0.2	-1.4	compare
	R2A control	-0.1	-0.6	compare
	R2A control	+0.0	+0.1	compare
	R2A control	-0.1	-1.2	compare
	R2A control	+0.0	+0.4	compare
	R2A control	+0.1	+0.5	compare
	R2A control	+0.1	+0.6	compare
	R2A control	+0.1	+0.6	compare
	R2A control	-0.0	-0.1	compare
	R2A control	-0.0	-0.0	compare
	R2A control	+0.1	+0.5	compare
	R2A control	-0.1	-0.4	compare
	R2A control	+0.0	+0.3	compare
	R2A control	-0.1	-0.9	compare
	R2A control	+0.1	+0.5	compare
	R2A control	+0.1	+0.4	compare
	R2A control	+0.1	+0.7	compare
	R2A control	+0.2	+1.6	compare
	R2A control	+0.0	+0.3	compare
	R2A control	+0.0	+0.2	compare
stress	R2A_PIPES with Aluminum chloride 1.125 mM	+0.1	+0.5	compare
	R2A_PIPES with Aluminum chloride 1.125 mM	-0.1	-0.9	compare
	R2A with Aluminum chloride 1.5625 mM	+0.0	+0.4	compare
	R2A with Aluminum chloride 1.5625 mM	-0.1	-0.5	compare
	R2A with Aluminum chloride 1.5625 mM	+0.0	+0.1	compare
	R2A with Aluminum chloride 1.5625 mM	+0.0	+0.1	compare
	R2A with Aluminum chloride 3.125 mM	+0.0	+0.3	compare
	R2A with Aluminum chloride 3.125 mM	+0.0	+0.3	compare
	R2A with Aluminum chloride 3.125 mM	+0.0	+0.2	compare
	R2A with Aluminum chloride 3.125 mM	-0.1	-0.9	compare
	R2A with Aluminum chloride 6.25 mM	-0.1	-1.0	compare
	R2A with Aluminum chloride 6.25 mM	-0.1	-0.9	compare
	R2A with ammonium iron(II) sulfate 2.5 mM	+0.0	+0.3	compare
	R2A with ammonium iron(II) sulfate 2.5 mM	+0.0	+0.4	compare
	R2A with Barium chloride 1.25 mM	+0.1	+0.8	compare
	R2A with Barium chloride 1.25 mM	-0.0	-0.1	compare
	R2A with beryllium sulfate tetrahydrate 1.953125 mM	+0.0	+0.2	compare
	R2A with beryllium sulfate tetrahydrate 1.953125 mM	+0.1	+0.6	compare
	R2A with bismuth(III) chloride 0.03125 mM	+0.0	+0.1	compare
	R2A with bismuth(III) chloride 0.03125 mM	+0.1	+0.4	compare
	R2A_PIPES with Cadmium chloride 16 uM	-0.2	-1.5	compare
	R2A_PIPES with Cadmium chloride 16 uM	+0.0	+0.1	compare
	R2A with Cadmium chloride hemipentahydrate 0.01953125 mM	+0.1	+0.8	compare
	R2A with Cadmium chloride hemipentahydrate 0.01953125 mM	-0.1	-0.7	compare
	R2A with Cadmium chloride hemipentahydrate 0.0390625 mM	-0.1	-1.2	compare
	R2A with Cadmium chloride hemipentahydrate 0.0390625 mM	-0.1	-0.7	compare
	R2A with Cadmium chloride hemipentahydrate 0.0625 mM	-0.1	-0.5	compare
	R2A with Calcium chloride 125 mM	+0.1	+0.7	compare
	R2A with Calcium chloride 125 mM	+0.1	+1.0	compare
	R2A with Calcium chloride 250 mM	+0.1	+0.8	compare
	R2A with Calcium chloride 250 mM	+0.2	+1.3	compare
	R2A with Cesium chloride 3.90625 mM	+0.0	+0.2	compare
	R2A with Cesium chloride 3.90625 mM	+0.0	+0.0	compare
	R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM	-0.1	-0.7	compare
	R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM	+0.1	+0.4	compare
	R2A with Chromium(III) Chloride Hexahydrate 0.09765625 mM	+0.1	+0.3	compare
	R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM	-0.1	-0.4	compare
	R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM	+0.1	+0.6	compare
	R2A with Cobalt chloride 0.0390625 mM	-0.2	-1.7	compare
	R2A with Cobalt chloride 0.0390625 mM	-0.0	-0.1	compare
	R2A with Cobalt chloride 0.078125 mM	-0.1	-1.0	compare
	R2A with Cobalt chloride 0.078125 mM	-0.0	-0.4	compare
	R2A with Cobalt chloride 0.15625 mM	+0.2	+0.9	compare
	R2A with Cobalt chloride 0.15625 mM	+0.3	+1.9	compare
	R2A_PIPES with Cobalt chloride 256 uM	-0.0	-0.2	compare
	R2A_PIPES with Cobalt chloride 256 uM	+0.2	+1.6	compare
	R2A with copper (II) chloride 0.15625 mM	-0.1	-0.8	compare
	R2A with copper (II) chloride 0.15625 mM	-0.0	-0.3	compare
	R2A with copper (II) chloride 0.3125 mM	-0.1	-0.6	compare
	R2A with copper (II) chloride 0.3125 mM	+0.0	+0.1	compare
	R2A with Ferric chloride 1.5625 mM	+0.1	+0.9	compare
	R2A with FW104 filtrate 0.5 X	-0.0	-0.3	compare
	R2A with FW104 filtrate 0.5 X	-0.1	-0.7	compare
	R2A with FW104 filtrate 0.5 X	-0.2	-1.4	compare
	R2A with FW104 filtrate 0.5 X	-0.1	-0.6	compare
	R2A with Gallium(III)chloride 0.78125 mM	+0.2	+1.8	compare
	R2A with Gallium(III)chloride 0.78125 mM	-0.0	-0.2	compare
	R2A with lead(II) chloride 0.625 mM	+0.1	+0.9	compare
	R2A with lead(II) chloride 0.625 mM	+0.0	+0.1	compare
	R2A with lithium chloride 15.625 mM	-0.2	-1.3	compare
	R2A with lithium chloride 15.625 mM	-0.0	-0.2	compare
	R2A with Magnesium sulfate 3.90625 mM	-0.0	-0.2	compare
	R2A with Magnesium sulfate 3.90625 mM	+0.0	+0.0	compare
	R2A with Manganese (II) chloride tetrahydrate 0.15625 mM	+0.0	+0.3	compare
	R2A with Manganese (II) chloride tetrahydrate 0.15625 mM	+0.1	+1.2	compare
	R2A with Manganese (II) chloride tetrahydrate 0.3125 mM	+0.0	+0.2	compare
	R2A with Manganese (II) chloride tetrahydrate 0.3125 mM	-0.0	-0.2	compare
	R2A with Manganese (II) chloride tetrahydrate 0.625 mM	-0.0	-0.2	compare
	R2A with Manganese (II) chloride tetrahydrate 0.625 mM	-0.1	-0.9	compare
	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM	+0.1	+0.6	compare
	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM	-0.3	-1.7	compare
	R2A with Manganese (II) chloride tetrahydrate 1.25 mM	-0.0	-0.4	compare
	R2A with Manganese (II) chloride tetrahydrate 1.25 mM	-0.1	-0.5	compare
	R2A with Manganese (II) chloride tetrahydrate 2.5 mM	-0.2	-1.4	compare
	R2A with Manganese (II) chloride tetrahydrate 2.5 mM	-0.0	-0.1	compare
	R2A with Manganese (II) chloride tetrahydrate 3.125 mM	-0.0	-0.2	compare
	R2A with Manganese (II) chloride tetrahydrate 3.125 mM	-0.1	-0.5	compare
	R2A with Manganese (II) chloride tetrahydrate 6.25 mM	+0.0	+0.2	compare
	R2A with Manganese (II) chloride tetrahydrate 6.25 mM	-0.0	-0.0	compare
	R2A with mercury (II) chloride 0.009765625 mM	-0.0	-0.0	compare
	R2A_PIPES with Metal_ion_mix_sitestressplate 0.25 x	-0.1	-0.5	compare
	R2A_PIPES with Metal_ion_mix_sitestressplate 2 x	+0.0	+0.1	compare
	R2A_PIPES with Metal_ion_mix_sitestressplate 2 x	-0.1	-0.4	compare
	R2A with Nickel (II) chloride 0.15625 mM	-0.0	-0.2	compare
	R2A with Nickel (II) chloride 0.15625 mM	-0.1	-0.8	compare
	R2A with Nickel (II) chloride 0.3125 mM	-0.2	-1.2	compare
	R2A with Nickel (II) chloride 0.3125 mM	+0.1	+0.7	compare
	R2A with Nickel (II) chloride 0.3125 mM	-0.1	-0.5	compare
	R2A with Nickel (II) chloride 0.3125 mM	-0.1	-0.9	compare
	R2A with Nickel (II) chloride 0.625 mM	+0.1	+0.5	compare
	R2A with Nickel (II) chloride 0.625 mM	+0.1	+0.7	compare
	R2A_PIPES with Nickel (II) chloride 424 uM	-0.4	-2.5	compare
	R2A with Other_metal_mix 1 X	-0.1	-0.9	compare
	R2A with Other_metal_mix 1 X	+0.1	+0.4	compare
	R2A with Other_metal_mix 1 X	-0.1	-0.5	compare
	R2A with Other_metal_mix 1 X	-0.1	-0.7	compare
	R2A with Chloride 250 mM	+0.0	+0.3	compare
	R2A with Chloride 250 mM	-0.1	-0.6	compare
	R2A with chromate 0.0048828125 mM	-0.1	-0.8	compare
	R2A with chromate 0.0048828125 mM	-0.2	-1.2	compare
	R2A with Selective_ion_mix_1 1 X	-0.1	-0.5	compare
	R2A with Selective_ion_mix_1 1 X	-0.1	-0.8	compare
	R2A with Selective_ion_mix_1 1 X	-0.3	-2.0	compare
	R2A with Selective_ion_mix_1 1 X	-0.1	-0.6	compare
	R2A with Selective_ion_mix_1 1 X	+0.1	+0.7	compare
	R2A with Selective_ion_mix_1 1 X	-0.0	-0.1	compare
	R2A with silver chloride 1 mM	+0.0	+0.0	compare
	R2A with silver chloride 1 mM	-0.0	-0.1	compare
	R2A with arsenate 15.625 mM	+0.0	+0.2	compare
	R2A with arsenate 15.625 mM	-0.1	-0.6	compare
	R2A with arsenate 31.25 mM	-0.1	-0.5	compare
	R2A with arsenate 31.25 mM	+0.0	+0.4	compare
	R2A with sodium bromide 250 mM	+0.0	+0.4	compare
	R2A with sodium bromide 250 mM	+0.0	+0.0	compare
	R2A with Chloride 250 mM	+0.1	+0.6	compare
	R2A with Chloride 250 mM	-0.1	-0.6	compare
	R2A with m-arsenite 0.0390625 mM	-0.1	-1.0	compare
	R2A with m-arsenite 0.0390625 mM	-0.0	-0.3	compare
	R2A with m-arsenite 0.078125 mM	-0.1	-0.9	compare
	R2A with m-arsenite 0.078125 mM	-0.1	-1.0	compare
	R2A with nitrate 125 mM	-0.1	-0.6	compare
	R2A with nitrate 125 mM	-0.0	-0.3	compare
	R2A with nitrate 250 mM	-0.1	-1.1	compare
	R2A with nitrate 250 mM	-0.0	-0.0	compare
	R2A with nitrite 25 mM	-0.1	-1.0	compare
	R2A with nitrite 25 mM	-0.0	-0.4	compare
	R2A with nitrite 50 mM	+0.0	+0.1	compare
	R2A with nitrite 50 mM	+0.2	+1.3	compare
	R2A with selenate 31.25 mM	+0.1	+0.5	compare
	R2A with selenate 31.25 mM	+0.1	+0.8	compare
	R2A with sulfate 250 mM	-0.0	-0.4	compare
	R2A with sulfate 250 mM	+0.0	+0.2	compare
	R2A with SpecU metal mix 1 X	+0.3	+2.4	compare
	R2A with SpecU metal mix 1 X	+0.3	+2.2	compare
	R2A with Strontium chloride 3.90625 mM	+0.1	+1.2	compare
	R2A with Strontium chloride 3.90625 mM	-0.0	-0.2	compare
	R2A with Uranyl acetate 2.5 mM	-0.0	-0.1	compare
	R2A with Uranyl acetate 2.5 mM	-0.1	-1.1	compare
	R2A with Zinc chloride 0.3125 mM	-0.0	-0.0	compare
	R2A with Zinc chloride 0.3125 mM	-0.1	-0.6	compare
	R2A with Zinc chloride 0.625 mM	+0.3	+2.2	compare
	R2A with Zinc chloride 0.625 mM	+0.1	+0.8	compare
	R2A with Zinc chloride 0.625 mM	+0.0	+0.1	compare
	R2A_PIPES with Zinc chloride 640 uM	-0.1	-0.5	compare