Fitness data for HSERO_RS21140 in Herbaspirillum seropedicae SmR1

hydroxypyruvate isomerase
SEED: Hydroxypyruvate isomerase (EC 5.3.1.22)
KEGG: hydroxypyruvate isomerase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
stress Nickel (II) chloride 0.6 mM -0.8 -3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 -2.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.2 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.5 -2.5 compare
stress nitrite 20 mM -0.5 -2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -2.2 compare
carbon source L-Lactate (C) +0.5 +2.9 compare
carbon source L-Rhamnose (C) +0.5 +1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 +1.5 compare
carbon source L-Lactate (C) +0.5 +1.8 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.5 +1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.5 +1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.6 +2.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.6 +2.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.7 +2.1 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +1.1 +1.9 compare