Fitness data for HSERO_RS19615 in Herbaspirillum seropedicae SmR1

LysR family transcriptional regulator
SEED: Transcriptional regulator, LysR family
KEGG: LysR family transcriptional regulator, transcriptional activator of nhaA

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
stress Lomefloxacin 0.012 mM -0.7 -1.7 compare
stress Sisomicin 0.125 mg/ml -0.6 -1.5 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -0.6 -1.4 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM -0.5 -1.6 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.5 -2.4 compare
plant Control soil assay; outgrowth in LB -0.5 -1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.4 -2.5 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -0.4 -1.0 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM -0.4 -1.0 compare
vitamin With vitamins t2 -0.4 -1.8 compare
carbon source D-Mannose (C) -0.4 -1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.8 compare
carbon source D-Galactose (C) +0.4 +2.3 compare
supernatant control Vogels_fungal_media 0.1X +0.4 +2.3 compare
stress nitrite 20 mM +0.4 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.5 +1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +2.1 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.6 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 +1.6 compare