Fitness data for HSERO_RS11225 in Herbaspirillum seropedicae SmR1

branched-chain amino acid ABC transporter permease
SEED: High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
KEGG: branched-chain amino acid transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
agar plate interaction control Taped volatile agar plate with no fungus -0.7 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 -1.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.6 -1.9 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.5 -1.3 compare
stress Sisomicin 0.125 mg/ml -0.5 -1.2 compare
carbon source L-Malic (C) -0.5 -1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -1.9 compare
carbon source D-Gluconic Acid (C) -0.4 -1.3 compare
carbon source Xylitol (C) +0.4 +1.6 compare
carbon source D,L-Lactate (C) +0.5 +1.8 compare
stress nitrate 200 mM +0.5 +0.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +2.0 compare
carbon source D,L-Lactate (C) +0.6 +2.5 compare
carbon source D-Xylose (C) +0.6 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +1.5 compare
carbon source D-Glucose (C) +0.8 +2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +2.2 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days +1.0 +5.8 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days +1.0 +5.6 compare