Fitness data for HSERO_RS04565 in Herbaspirillum seropedicae SmR1

bacteriophage capsid portal protein

All 244 fitness values, sorted by group and condition


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.7 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 +0.2 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.6 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +1.0 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.7 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.8 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.5 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.8 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 -0.1 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.3 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.5 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.2 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.7 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.7 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.4 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.0 -0.1 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.0 -0.2 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.0 -0.1 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 -0.5 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.0 +0.2 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 -1.6 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 +0.2 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.9 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 -0.9 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 +0.3 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -0.3 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 -1.2 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 -0.5 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -1.7 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -0.8 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.0 +0.2 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 -0.8 compare
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 +0.6 compare
Taped volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.5 compare
Taped volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 +0.4 compare
Parafilmed volatile agar plate with no fungus -0.2 -0.9 compare
Parafilmed volatile agar plate with no fungus +0.1 +0.6 compare
Parafilmed volatile agar plate with no fungus -0.0 -0.2 compare
Parafilmed volatile agar plate with no fungus +0.1 +0.3 compare
Parafilmed volatile agar plate with no fungus -0.0 -0.2 compare
Parafilmed volatile agar plate with no fungus +0.7 +0.8 compare
Parafilmed volatile agar plate with no fungus +0.4 +1.2 compare
Parafilmed volatile agar plate with no fungus +0.3 +1.3 compare
Parafilmed volatile agar plate with no fungus -0.3 -1.3 compare
Parafilmed volatile agar plate with no fungus +0.0 +0.1 compare
Parafilmed volatile agar plate with no fungus -0.2 -0.8 compare
Parafilmed volatile agar plate with no fungus +0.2 +0.8 compare
Parafilmed volatile agar plate with no fungus -0.0 -0.1 compare
Parafilmed volatile agar plate with no fungus +0.2 +0.9 compare
Taped volatile agar plate with no fungus -0.3 -1.1 compare
Taped volatile agar plate with no fungus -0.3 -1.7 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.0 +0.3 compare
Carbon source 2-Deoxy-D-Ribose 5 mM +0.2 +1.0 compare
Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM -0.1 -0.8 compare
Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM -0.1 -0.4 compare
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -0.1 -0.6 compare
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -0.1 -0.6 compare
a-Ketoglutaric (C) -0.2 -0.7 compare
a-Ketoglutaric (C) -0.5 -2.8 compare
D,L-Malic Acid (C) +0.1 +0.9 compare
D,L-Malic Acid (C) +0.0 +0.1 compare
D-Galactose (C) +0.2 +1.6 compare
D-Galactose (C) +0.2 +1.1 compare
D-Galactose (C) -0.0 -0.0 compare
D-Galactose (C) -0.5 -2.2 compare
D-Galacturonic Acid (C) -0.3 -1.0 compare
D-Galacturonic Acid (C) -0.2 -1.0 compare
D-Gluconic Acid (C) -0.2 -0.7 compare
D-Gluconic Acid (C) -0.4 -1.8 compare
D-Glucose (C) +0.2 +1.0 compare
D-Glucose (C) +0.3 +1.4 compare
D-Glucose (C) -0.7 -2.8 compare
D-Glucose (C) -0.1 -0.5 compare
Carbon source D-Glucose 20 mM +0.1 +0.9 compare
Carbon source D-Glucose 20 mM +0.2 +1.1 compare
D-Glucose-6-Phosphate (C) -0.4 -1.8 compare
D-Glucose-6-Phosphate (C) -0.1 -0.3 compare
D-Mannitol (C) +0.2 +1.7 compare
D-Mannitol (C) +0.3 +1.5 compare
D-Mannose (C) -0.3 -1.1 compare
D-Mannose (C) -0.1 -0.3 compare
D-Ribose (C) -0.1 -0.5 compare
D-Ribose (C) -0.1 -0.4 compare
D-Sorbitol (C) -0.4 -1.1 compare
D-Xylose (C) +0.2 +1.1 compare
D-Xylose (C) -0.0 -0.2 compare
D-Xylose (C) -0.3 -0.7 compare
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL -0.4 -1.6 compare
Glycerol (C) -0.4 -1.3 compare
Glycerol (C) -0.1 -0.4 compare
L-Arabinose (C) +0.0 +0.1 compare
L-Arabinose (C) -0.4 -2.3 compare
L-Asparagine (C) -0.1 -0.2 compare
L-Asparagine (C) -0.1 -0.4 compare
L-Fucose (C) +0.2 +0.9 compare
L-Fucose (C) +0.3 +1.2 compare
L-Fucose (C) -0.2 -0.4 compare
L-Fucose (C) -0.5 -2.0 compare
L-Glutamine (C) -0.2 -0.9 compare
L-Glutamine (C) -0.0 -0.3 compare
L-Malic (C) -0.2 -1.2 compare
L-Malic (C) -0.1 -0.3 compare
L-mannose (C) +0.1 +0.6 compare
L-mannose (C) +0.1 +0.5 compare
L-Proline (C) -0.2 -0.8 compare
L-Proline (C) +0.0 +0.2 compare
L-Rhamnose (C) +0.2 +1.1 compare
L-Rhamnose (C) +0.1 +0.6 compare
L-Rhamnose (C) -0.4 -1.7 compare
L-Rhamnose (C) -0.2 -0.9 compare
m-Inositol (C) -0.1 -0.3 compare
m-Inositol (C) +0.0 +0.0 compare
Carbon source Phenylacetic 5 mM -0.2 -1.5 compare
Carbon source Phenylacetic 5 mM -0.1 -0.6 compare
D,L-Lactate (C) +0.2 +1.6 compare
D,L-Lactate (C) +0.1 +0.7 compare
D,L-Lactate (C) -0.2 -0.8 compare
D,L-Lactate (C) -0.2 -1.1 compare
D-Lactate (C) -0.2 -0.8 compare
D-Lactate (C) -0.5 -1.5 compare
L-Lactate (C) -0.4 -2.1 compare
L-Lactate (C) -0.2 -0.7 compare
pyruvate (C) -0.0 -0.0 compare
pyruvate (C) -0.1 -0.4 compare
succinate (C) -0.1 -0.6 compare
succinate (C) -0.2 -1.2 compare
Xylitol (C) -0.3 -1.1 compare
Xylitol (C) -0.2 -1.0 compare
control NoPredeControl +0.2 +0.6 compare
NoPredeControl +0.2 +0.4 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.1 -0.4 compare
Acanthamoeba sp., muxed culture-2 -0.4 -1.5 compare
C.elegans, mixed culture-1 -0.4 -2.1 compare
C.elegans, mixed culture-2 +0.2 +0.8 compare
Dictyostellum sp.mixed culture-1 +0.1 +0.6 compare
Dictyostellum sp.mixed culture-2 +0.2 +1.2 compare
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days +0.4 +1.8 compare
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days +0.0 +0.1 compare
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days +0.1 +0.9 compare
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days +0.3 +2.1 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days +0.1 +0.8 compare
D-Glucose (C) with ammonium chloride; anaerobic; 3 days +0.2 +0.8 compare
D-Glucose (C) with ammonium chloride; anaerobic; 8 days +0.3 +2.5 compare
D-Glucose (C) with ammonium chloride; anaerobic; 8 days +0.5 +3.3 compare
L-Malic (C) with ammonium chloride; anaerobic; 3 days +0.2 +1.5 compare
L-Malic (C) with ammonium chloride; anaerobic; 3 days +0.2 +1.6 compare
L-Malic (C) with ammonium chloride; anaerobic; 8 days +0.4 +2.5 compare
L-Malic (C) with ammonium chloride; anaerobic; 8 days +0.2 +1.6 compare
nitrogen source Ammonium chloride (N); high aeration +0.2 +1.0 compare
Ammonium chloride (N); low aeration +0.1 +0.3 compare
Ammonium chloride (N); high aeration +0.2 +1.1 compare
Ammonium chloride (N); low aeration +0.3 +2.0 compare
L-Glutamic (N); high aeration +0.2 +1.2 compare
L-Glutamic (N); low aeration +0.1 +0.6 compare
L-Proline (N) -0.3 -1.9 compare
nitrate (N); high aeration +0.1 +0.8 compare
nitrate (N); low aeration +0.1 +0.4 compare
nitrate (N); high aeration +0.0 +0.1 compare
nitrate (N); low aeration +0.2 +0.9 compare
nutrient Min media with glucose +0.4 +1.6 compare
Min media with glucose +0.4 +1.5 compare
casaminos +0.4 +2.1 compare
casaminos +0.3 +1.4 compare
L-Histidine +0.3 +1.5 compare
L-Histidine +0.3 +1.7 compare
L-Serine +0.2 +0.9 compare
L-Serine +0.1 +0.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.5 compare
Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.0 -0.1 compare
Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.3 +0.8 compare
Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.1 +0.5 compare
Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.2 +0.5 compare
Control soil assay; outgrowth in LB +0.7 +4.0 compare
Control soil assay; outgrowth in LB +0.1 +0.5 compare
r2a control R2A control -0.3 -1.5 compare
R2A control -0.7 -5.2 compare
R2A control -0.2 -1.0 compare
R2A control -0.0 -0.1 compare
R2A control -0.2 -1.1 compare
R2A control -0.1 -0.4 compare
stress Cisplatin 0.003 mg/ml +1.2 +5.6 compare
Cobalt chloride 0.2 mM +0.2 +0.9 compare
Dimethyl Sulfoxide 5 vol% -0.1 -0.4 compare
Fusidic 0.025 mg/ml -0.3 -0.9 compare
Lomefloxacin 0.012 mM +0.5 +1.2 compare
A22 0.02 mg/ml +0.1 +1.1 compare
A22 0.04 mg/ml +0.2 +0.6 compare
Nickel (II) chloride 0.6 mM +0.2 +0.5 compare
Sisomicin 0.125 mg/ml -0.3 -0.8 compare
Chloride stress +0.2 +1.4 compare
Chloride stress +0.1 +0.7 compare
sodium fluoride 100 mM +0.2 +1.0 compare
nitrate 200 mM -0.3 -1.1 compare
nitrite 20 mM +0.2 +0.7 compare
Thallium(I) acetate 0.001 mg/ml +0.1 +0.3 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.0 +0.3 compare
Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.2 -1.0 compare
Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.0 -0.1 compare
Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.1 -0.7 compare
Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.2 -0.9 compare
Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.1 +0.4 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.1 -0.7 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.3 -1.1 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.2 -0.8 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.0 +0.2 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.1 +0.9 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.0 -0.2 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.0 -0.1 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.1 +0.4 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.0 -0.1 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.2 +1.0 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.1 +0.4 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.3 +1.0 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.1 -0.9 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.0 -0.1 compare
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.1 +0.5 compare
Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.0 -0.2 compare
Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.2 -0.9 compare
Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.1 -0.9 compare
supernatant control Vogels_fungal_media 0.1X +0.0 +0.0 compare
Vogels_fungal_media 0.1X -0.2 -0.6 compare
Vogels_fungal_media; pH 5.5 -0.2 -0.5 compare
Vogels_fungal_media; pH 5.5 -0.0 -0.0 compare
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.3 +1.3 compare
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.1 +0.5 compare
Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.2 +1.2 compare
Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.0 -0.1 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.2 +0.8 compare
R2A with Vogels_fungal_media 0.2X -0.0 -0.1 compare
R2A with Vogels_fungal_media 0.2X -0.1 -0.5 compare
R2A with Vogels_fungal_media 0.2X -0.1 -0.7 compare
R2A with Vogels_fungal_media 0.2X -0.1 -0.7 compare
R2A with Vogels_fungal_media 0.2X -0.2 -1.1 compare
R2A with Vogels_fungal_media 0.8X +0.0 +0.2 compare
R2A with Vogels_fungal_media 0.8X -0.1 -0.5 compare
R2A with Vogels_fungal_media 0.8X -0.3 -1.2 compare
R2A with Vogels_fungal_media 0.8X -0.0 -0.2 compare
R2A with Vogels_fungal_media 0.8X -0.0 -0.2 compare
R2A with Vogels_fungal_media 0.8X +0.2 +1.6 compare
vitamin No vitamins t1 +0.1 +0.6 compare
No vitamins t2 +0.1 +0.4 compare
With vitamins t1 +0.0 +0.1 compare
With vitamins t2 +0.4 +2.3 compare