Fitness data for HSERO_RS04080 in Herbaspirillum seropedicae SmR1

invasion protein
SEED: Conjugative transfer transglycosylase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
stress nitrate 200 mM -0.5 -2.3 compare
stress Sisomicin 0.125 mg/ml -0.3 -1.1 compare
stress A22 0.04 mg/ml -0.3 -2.2 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.3 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +1.6 compare
carbon source L-Rhamnose (C) +0.3 +1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.3 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +1.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.9 compare
carbon source Carbon source Phenylacetic 5 mM +0.4 +2.0 compare
carbon source L-Proline (C) +0.4 +1.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.4 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.4 +2.0 compare
control NoPredeControl +0.4 +1.5 compare
carbon source D-Galacturonic Acid (C) +0.4 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +2.7 compare
supernatant control Vogels_fungal_media 0.1X +0.4 +2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.6 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +1.7 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.8 +2.3 compare