Fitness data for HSERO_RS01600 in Herbaspirillum seropedicae SmR1

2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
SEED: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
KEGG: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -1.2 -1.8 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.1 -1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 -2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -1.0 -2.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 -1.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.9 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -1.9 compare
carbon source L-Lactate (C) -0.8 -1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -1.2 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.7 -1.1 compare
carbon source L-Fucose (C) -0.6 -2.0 compare
carbon source L-Rhamnose (C) -0.6 -1.1 compare
supernatant control Vogels_fungal_media 0.1X -0.6 -1.6 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.1 compare
nitrogen source nitrate (N); low aeration -0.6 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.4 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.6 -0.8 compare
carbon source L-Arabinose (C) +0.6 +1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +1.3 compare