Fitness data for HMPREF1058_RS14445 in Phocaeicola vulgatus CL09T03C04

sigma-70 family RNA polymerase sigma factor
SEED: RNA polymerase ECF-type sigma factor

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source 3'-fucosyllactose 10 mg/mL (C) -0.6 -1.4 compare
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) -0.5 -1.3 compare
carbon source beta-Cyclodextrin 5 mg/ml (C) -0.5 -1.8 compare
carbon source Cravingzgone 10 mg/mL (C) -0.5 -2.1 compare
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 -0.5 -1.8 compare
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -0.5 -1.9 compare
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 -0.5 -1.5 compare
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 -0.5 -1.5 compare
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.5 -1.6 compare
carbon source Dextran 5 mg/ml (C) -0.5 -1.7 compare
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 -0.4 -1.4 compare
carbon source D-Arabinose 10 mM (C) +0.4 +2.5 compare
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 +0.4 +0.9 compare
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.4 +0.9 compare
phosphorus source Adenosine 3,5-Cyclic Monophosphate 1 mM phosphorus source +0.4 +1.2 compare
phosphorus source Adenosine 3' 5' cyclic monophosphate 1 mM phosphorus source +0.4 +1.2 compare
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.5 +1.6 compare
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) +0.5 +1.8 compare
carbon source beta-Cyclodextrin 2.5 mg/ml (C) +0.6 +2.0 compare
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +0.8 +1.6 compare