Fitness data for H281DRAFT_00492 in Paraburkholderia bryophila 376MFSha3.1

TatD DNase family protein
SEED: Putative deoxyribonuclease YjjV
KEGG: TatD DNase family protein

All 128 fitness values, sorted by group and condition


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group condition fitness t score  
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.3 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.1 -0.5 compare
2'-Deoxyinosine 5 mM (C) -0.1 -0.3 compare
2'-Deoxyinosine 10 mM (C) +0.0 +0.2 compare
2'-Deoxyinosine 10 mM (C) +0.2 +0.9 compare
2-Deoxy-D-ribonic lithium salt (C) -0.1 -0.5 compare
2-Deoxy-D-ribonic lithium salt (C) +0.2 +1.0 compare
2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.1 +0.6 compare
2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.1 +0.3 compare
2-Deoxy-D-Ribose (C) +0.1 +0.4 compare
2-Deoxy-D-Ribose (C) +0.2 +1.0 compare
2-Deoxy-D-Ribose (C) +0.0 +0.2 compare
2-Deoxy-D-Ribose (C) +0.1 +0.5 compare
2-Deoxy-D-Ribose 10 mM (C) +0.1 +0.3 compare
2-Deoxy-D-Ribose 10 mM (C) +0.0 +0.2 compare
2-Deoxy-D-Ribose 20 mM (C) +0.1 +0.5 compare
2-Deoxy-D-Ribose 20 mM (C) +0.1 +0.7 compare
2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 +0.7 compare
2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.0 +0.3 compare
2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.1 +0.6 compare
2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.2 +1.3 compare
2-furoic (C) +0.2 +1.2 compare
2-furoic (C) +0.1 +0.5 compare
3-hydroxybutyric (C) +0.2 +1.3 compare
3-hydroxybutyric (C) +0.1 +1.1 compare
3-Hydroxypropionate (C) +0.2 +1.1 compare
3-Hydroxypropionate (C) +0.1 +0.5 compare
4-Hydroxybenzoic Acid (C) +0.2 +1.1 compare
4-Methyl-2-oxopentanoic (C) -0.1 -0.9 compare
4-Methyl-2-oxopentanoic (C) +0.0 +0.1 compare
Azelaic (C) -0.2 -1.4 compare
D-Galactose (C) +0.1 +0.3 compare
D-Galactose (C) +0.1 +1.0 compare
D-Glucose (C) -0.1 -0.4 compare
D-Glucose (C) +0.1 +0.9 compare
D-Glucose (C) +0.2 +1.0 compare
D-Glucose (C) +0.0 +0.3 compare
D-Glucose (C) +0.1 +0.3 compare
D-Glucose (C) +0.2 +1.5 compare
D-Glucose (C) +0.1 +0.4 compare
D-Glucose 20 mM (C) +0.1 +0.7 compare
D-Glucose 20 mM (C) +0.2 +1.4 compare
D-Glucose (C) -0.0 -0.0 compare
D-Glucose (C) +0.1 +0.3 compare
Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 +0.7 compare
Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.0 +0.0 compare
Dodecandioic (C) +0.2 +1.2 compare
Gallic Acid (C) +0.1 +1.1 compare
Gallic Acid (C) +0.1 +0.5 compare
Glycerol (C) -0.0 -0.2 compare
Glycerol (C) +0.1 +0.5 compare
Hexanoic (C) -0.2 -0.8 compare
Hexanoic (C) -0.2 -0.7 compare
Hydroxy-L-Proline (C) -0.1 -0.4 compare
Hydroxy-L-Proline (C) +0.1 +0.6 compare
L-Glutamic (C) +0.2 +1.2 compare
L-Glutamic (C) -0.0 -0.1 compare
Malonic (C) -0.2 -0.8 compare
Malonic (C) -0.3 -1.3 compare
Malonic (C) -0.0 -0.2 compare
Malonic (C) +0.2 +1.2 compare
p-Coumaric (C) -0.0 -0.3 compare
p-Coumaric (C) +0.1 +0.6 compare
Phenylacetic (C) -0.1 -0.8 compare
Phenylacetic (C) -0.1 -0.9 compare
Pimelic (C) +0.0 +0.1 compare
Protocatechuic Acid (C) -0.3 -1.3 compare
Protocatechuic Acid (C) -0.0 -0.1 compare
Protocatechuic Acid (C) +0.0 +0.1 compare
Protocatechuic Acid (C) +0.2 +1.3 compare
Protocatechuic Acid (C) +0.0 +0.1 compare
Protocatechuic Acid (C) +0.0 +0.2 compare
Sebacic (C) -0.4 -2.1 compare
acetate (C) +0.2 +1.3 compare
acetate (C) -0.0 -0.2 compare
adipate (C) -0.3 -1.7 compare
adipate (C) -0.1 -0.7 compare
butyrate (C) -0.5 -2.4 compare
butyrate (C) -0.2 -0.8 compare
D,L-Lactate (C) +0.1 +0.8 compare
D,L-Lactate (C) -0.2 -1.2 compare
D,L-Lactate (C) +0.3 +1.7 compare
D,L-Lactate (C) +0.2 +1.3 compare
propionate (C) +0.0 +0.1 compare
propionate (C) -0.1 -0.8 compare
propionate (C) +0.0 +0.3 compare
propionate (C) +0.1 +0.5 compare
succinate (C) -0.0 -0.2 compare
succinate (C) +0.2 +1.4 compare
Suberic (C) -0.2 -1.2 compare
Valeric (C) -0.1 -1.0 compare
Valeric (C) -0.0 -0.0 compare
control NoPhageControl +0.1 +0.6 compare
ecofab LB in EcoFAB_3.5mL -0.0 -0.3 compare
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.3 compare
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 -0.8 compare
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 +0.5 compare
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.0 -0.3 compare
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 -0.4 compare
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 +1.3 compare
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.0 compare
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.4 compare
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +1.9 compare
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.4 compare
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +1.1 compare
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +1.7 compare
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.3 compare
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +2.5 compare
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.3 compare
lb LB +0.0 +0.4 compare
LB +0.1 +0.7 compare
phage Bu1_10 +0.3 +1.1 compare
Bu1_100 +0.1 +0.6 compare
Bu1_100 -0.6 -2.6 compare
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.1 +0.7 compare
RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.1 +0.6 compare
RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.1 +0.3 compare
RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.0 +0.1 compare
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.1 +0.3 compare
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.3 -1.5 compare
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.0 +0.1 compare
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.0 -0.2 compare
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.0 +0.2 compare
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.0 -0.0 compare
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.4 -2.5 compare
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.1 -0.4 compare
LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.0 -0.0 compare
LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.0 +0.3 compare