Fitness data for BPHYT_RS29905 in Burkholderia phytofirmans PsJN

2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
SEED: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
vitamin With vitamins t2 -1.5 -3.6 compare
phage 36hr PHYTO10 MOI 1 -1.4 -2.0 compare
phage 36hr PHYTO2 MOI 1 -1.3 -1.6 compare
carbon source Suberic (C) -1.1 -1.8 compare
nutrient L-Histidine -1.1 -2.0 compare
carbon source Phenylacetic 5 mM (C) -1.0 -1.8 compare
nutrient casaminos -1.0 -1.8 compare
supernatant control Vogels_fungal_media 0.1X -1.0 -2.1 compare
phage 36hr PHYTO4 MOI 1 -0.9 -1.1 compare
nophagecontrol 24hr Phyto Lib only -0.9 -1.8 compare
phage 36hr PHYTO7 MOI 0.1 -0.9 -1.5 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.9 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.2 +2.2 compare
phage 36hr PHYTO8 MOI 10 +1.2 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.3 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.4 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.5 +3.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.5 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.7 +1.6 compare