Fitness data for BPHYT_RS26960 in Burkholderia phytofirmans PsJN

LysR family transcriptional regulator
SEED: regulatory protein, LysR:LysR, substrate-binding

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.8 -2.1 compare
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -1.1 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.7 -0.9 compare
phage 24hr PHYTO10 MOI 10 -0.7 -1.0 compare
phage 36hr PHYTO4 MOI 0.1 -0.7 -1.5 compare
temperature LB, 30C +0.7 +2.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.7 +0.9 compare
nitrogen source Uridine (N) +0.7 +2.1 compare
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.8 +2.1 compare
carbon source Gly-Glu (C) +0.8 +2.9 compare
motility inner cut, LB soft agar motility assay +0.8 +2.1 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.8 +2.1 compare
vitamin With vitamins t1 +0.9 +2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9 +2.1 compare
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +1.0 +2.8 compare
temperature LB, 37C +1.0 +1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.1 +0.8 compare
motility inner cut, LB soft agar motility assay +1.1 +3.2 compare