Fitness data for BPHYT_RS22380 in Burkholderia phytofirmans PsJN

Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data)
Original annotation: 3-hydroxybutyryl-CoA dehydrogenase
SEED: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
KEGG: 3-hydroxybutyryl-CoA dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
nitrogen source Carnitine Hydrochloride (N) -3.3 -5.7 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.7 -2.3 compare
carbon source D-Galacturonic Acid (C) -0.6 -2.7 compare
phage 36hr PHYTO11 MOI 0.1 -0.6 -2.0 compare
phage 24hr PHYTO6 MOI 1 -0.5 -2.0 compare
phage 24hr PHYTO9 MOI 0.1 -0.5 -2.1 compare
phage 24hr PHYTO MOI 0.1 -0.5 -1.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.5 -1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.5 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.9 compare
r2a control R2A control +0.5 +2.6 compare
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +1.4 compare
phage P. phyto PHYTO2 MOI 1 +0.5 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +2.3 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.6 +2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.9 compare
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.6 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +1.8 compare