Fitness data for BPHYT_RS21610 in Burkholderia phytofirmans PsJN

DNA-binding protein
SEED: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
KEGG: GntR family transcriptional regulator / MocR family aminotransferase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -1.0 -2.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.6 -2.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.5 -1.7 compare
motility inner cut, LB soft agar motility assay -0.5 -2.5 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.5 -1.7 compare
tn7 efficiency Outgrowth after Tn7 transformation -0.5 -2.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -1.6 compare
nitrogen source L-Isoleucine (N) -0.5 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.7 compare
carbon source D-Glucosamine Hydrochloride (C) -0.4 -2.2 compare
carbon source D-Ribose (C) -0.4 -2.0 compare
phage 36hr PHYTO11 MOI 1 -0.4 -2.2 compare
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 +0.4 +2.0 compare
phage 24hr PHYTO8 MOI 1 +0.5 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.5 compare
phage 24hr PHYTO1 MOI 10 +0.5 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.3 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.7 +1.2 compare