Fitness data for BPHYT_RS13545 in Burkholderia phytofirmans PsJN

3-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) (from data)
Original annotation: 3-hydroxyacyl-CoA dehydrogenase
SEED: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
KEGG: 3-hydroxyacyl-CoA dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source adipate (C) -3.4 -6.4 compare
carbon source L-Phenylalanine (C) -2.1 -9.6 compare
carbon source Dodecandioic (C) -2.1 -4.6 compare
carbon source Phenylacetic 5 mM (C) -2.0 -3.5 compare
carbon source Sebacic (C) -1.8 -3.9 compare
carbon source Phenylacetic 5 mM (C) -1.7 -4.4 compare
carbon source Sebacic (C) -1.6 -4.4 compare
carbon source Suberic (C) -1.3 -2.8 compare
carbon source Suberic (C) -1.0 -2.3 compare
nitrogen source L-Phenylalanine (N) -1.0 -3.0 compare
phage 24hr PHYTO6 MOI 10 -0.8 -2.6 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.8 -1.7 compare
phage 24hr PHYTO8 MOI 1 -0.8 -2.2 compare
phage 36hr PHYTO9 MOI 1 -0.7 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -1.8 compare
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.6 -1.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.7 +1.8 compare
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.7 +1.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.9 +2.2 compare